diff --git a/docs/source/conf.py b/docs/source/conf.py index 22a55694b..fbb567ef2 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -23,7 +23,7 @@ # -- Project information ----------------------------------------------------- project = "imap_processing" -copyright = "2023, Regents of the University of Colorado" +copyright = "2024, Regents of the University of Colorado" author = "IMAP Science Operations Center" # The full version, including alpha/beta/rc tags @@ -37,11 +37,12 @@ # ones. extensions = [ "sphinx.ext.autodoc", + "sphinx.ext.autosectionlabel", "sphinx.ext.autosummary", "sphinx.ext.intersphinx", # Link to other projects' documentation "sphinx.ext.githubpages", # Helpful for publishing to gh-pages "sphinx.ext.napoleon", - "sphinx.ext.autosectionlabel", + "sphinxcontrib.openapi", "numpydoc", ] diff --git a/docs/source/data-access-api/index.rst b/docs/source/data-access-api/index.rst new file mode 100644 index 000000000..824bec312 --- /dev/null +++ b/docs/source/data-access-api/index.rst @@ -0,0 +1,65 @@ +.. _data-access-api: + +Data Access API +=============== + +The SDC provides a REST API that allows users to upload and download files, as +well as query for file metadata. The following documentation describes the +various endpoints that are supported and how to use them. + +The API can be accessed from the following URL: https://api.dev.imap-mission.com + + +.. openapi:: openapi.yml + :group: + :include: /upload/science + +**Example Usage:** + +.. code-block:: bash + + curl -X GET -H "Accept: application/json" https://api.dev.imap-mission.com/upload/codice/l1a/2026/01/imap_codice_l1a_lo_20260101_20260102_v01-01.cdf + +**Possible Responses:** + +.. code-block:: json + + {"statusCode": 200, "body": "https://sds-data.s3.amazon.com/imap/codice/l1a/2026/01/imap_codice_l1a_lo_20260101_20260102_v01-01.cdf?"} + {"statusCode": 400, "body": "A pre-signed URL could not be generated. Please ensure that the file name matches mission file naming conventions."} + + +.. openapi:: openapi.yml + :group: + :include: /download + +**Example Usage:** + +.. code-block:: bash + + curl -X GET -H "Accept: application/json" /codice/l1a/2026/01/imap_codice_l1a_lo_20260101_20260102_v01-01.cdf + curl -X GET -H "Accept: application/json" imap_codice_l1a_lo_20260101_20260102_v01-01.cdf + +**Possible Responses:** + +.. code-block:: json + + {"statusCode": 302, "headers": {"Content-Type": "text/html", "Location": "s3://sds-data/imap/codice/l1a/2026/01/imap_codice_l1a_lo_20260101_20260102_v01-01"}, "body": {"download_url": "s3://sds-data/imap/codice/l1a/2026/01/imap_codice_l1a_lo_20260101_20260102_v01-01"}} + {"statusCode": 400, "body": "Not a valid S3 URI. Example input: s3://bucket/path/file.ext"} + + +.. openapi:: openapi.yml + :group: + :include: /query + +**Example Usage:** + +.. code-block:: bash + + curl -X GET -H "Accept: application/json" https://api.dev.imap-mission.com/query?instrument=mag&data_level=l0&descriptor=burst&start_date=20230112&end_date=20230113&version=*&extension=pkts + +**Possible Responses:** + +.. code-block:: json + + {"statusCode": 200, "headers": {"Content-Type": "application/json", "Access-Control-Allow-Origin": "*"}, "body": "[('mag', 'l0', 'burst', '20230112', '20230113', 'v01-01', 'pkts'), ('mag', 'l0', 'burst', '20230112', '20230113', 'v01-02', 'pkts')]"} + {"statusCode": 400, "headers": {"Content-Type": "application/json", "Access-Control-Allow-Origin": "*"}, "body": " is not a valid query parameter. Valid query parameters are: "} \ No newline at end of file diff --git a/docs/source/data-access-api/openapi.yml b/docs/source/data-access-api/openapi.yml new file mode 100644 index 000000000..40ca664d4 --- /dev/null +++ b/docs/source/data-access-api/openapi.yml @@ -0,0 +1,157 @@ +openapi: 3.0.0 +servers: + - description: Development IMAP SDC Server +host: https://api.dev.imap-mission.com/ +info: + version: "0.1.0" + title: IMAP SDC API + description: Describes the API endpoints for interacting with the IMAP SDC + +paths: + + '/upload/science/{filepath}': + get: + tags: + - Upload + summary: Upload a science file to the SDC + parameters: + - name: filepath + in: path + required: true + description: | + The full path to the file to upload, relative to the ``IMAP_DATA_DIR`` environment variable or the user's + current working directory. (e.g. ``{IMAP_DATA_DIR}/codice/l1a/2026/01/imap_codice_l1a_lo_20260101_20260102_v01-01.cdf``). + The filename must be a valid IMAP filename that follows the conventions described + `here `_. + schema: + type: string + responses: + '200': + description: Successful upload + content: + application/json: + schema: + type: array + items: + type: string + format: uri + '400': + description: Invalid or missing filename + content: + application/json: + schema: + type: array + items: + type: string + + '/download/{filepath-or-filename}': + get: + tags: + - Download + summary: Download a file from the SDC + operationId: download + parameters: + - in: path + name: filepath-or-filename + description: | + The filename to download (e.g. ``imap_codice_l1a_lo_20260101_20260102_v01-01.cdf``, optionally including the + full filepath (e.g. ``codice/l1a/2026/01/imap_codice_l1a_lo_20260101_20260102_v01-01.cdf``). The filename + must be a valid IMAP filename that follows the conventions described + `here `_. + required: true + schema: + type: string + responses: + '302': + description: Successful download + content: + application/json: + schema: + type: array + items: + type: string + format: uri + '400': + description: Unsuccessful download + content: + application/json: + schema: + type: array + items: + type: string + format: uri + + '/query': + get: + tags: + - Query + summary: Query for file metadata + operationId: query + parameters: + - in: query + name: instrument + description: | + The instrument of interest (e.g. ``mag``). Supported instruments are listed + `here `_. + required: false + schema: + type: string + - in: query + name: data_level + description: | + The level of data product (e.g. ``l1a``). Supported levels are listed + `here `_. + required: false + schema: + type: string + - in: query + name: descriptor + description: | + The descriptor of interest (e.g. ``burst``). Supported descriptors are listed + `here `_. + required: false + schema: + type: string + - in: query + name: start_date + description: Search for all files with a start date on or after this time, in the format ``YYYYMMDD``. + required: false + schema: + type: string + - in: query + name: end_date + description: Search for all files with a start date on or before this time, in the format ``YYYYMMDD``. + required: false + schema: + type: string + - in: query + name: version + description: The version of data product in the format ``vXX-YY`` (e.g. ``v01-01``). + required: false + schema: + type: string + - in: query + name: extension + description: The file extension of interest (e.g. ``cdf``). Supported extensions include ``pkts`` and ``cdf``. + required: false + schema: + type: string + responses: + '200': + description: Successful query + content: + application/json: + schema: + type: array + items: + type: string + format: uri + '400': + description: Unsuccessful query + content: + application/json: + schema: + type: array + items: + type: string + format: uri \ No newline at end of file diff --git a/docs/source/index.rst b/docs/source/index.rst index f5fcd1fb6..df621d721 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -23,8 +23,9 @@ The explicit code interfaces and structure are described in the :ref:`code-docum development-guide/index project-management/index external-tools/index + data-access-api/index -If you make use of any imap_processing code, please consider citing it in your research. +If you make use of any ``imap_processing`` code, please consider citing it in your research. TODO: Add a Zenodo DOI badge here. Contributing to IMAP @@ -52,5 +53,4 @@ exploration. Before contributing, please read through our :ref:`style-guide-overview`. -For more information on contributing to open science initiatives and to learn about tools and technologies, you can look to the NASA TOPS `Open Science 101 `_ for free classes on Open Science and open source projects. - +For more information on contributing to open science initiatives and to learn about tools and technologies, you can look to the NASA TOPS `Open Science 101 `_ for free classes on Open Science and open source projects. \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 1743fd5bd..2e92867ce 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.7.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. [[package]] name = "accessible-pygments" @@ -16,20 +16,39 @@ pygments = ">=1.5" [[package]] name = "alabaster" -version = "0.7.15" +version = "0.7.16" description = "A light, configurable Sphinx theme" -optional = true +optional = false python-versions = ">=3.9" files = [ - {file = "alabaster-0.7.15-py3-none-any.whl", hash = "sha256:d99c6fd0f7a86fca68ecc5231c9de45227991c10ee6facfb894cf6afb953b142"}, - {file = "alabaster-0.7.15.tar.gz", hash = "sha256:0127f4b1db0afc914883f930e3d40763131aebac295522fc4a04d9e77c703705"}, + {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, + {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, +] + +[[package]] +name = "attrs" +version = "23.2.0" +description = "Classes Without Boilerplate" +optional = false +python-versions = ">=3.7" +files = [ + {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"}, + {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"}, ] +[package.extras] +cov = ["attrs[tests]", "coverage[toml] (>=5.3)"] +dev = ["attrs[tests]", "pre-commit"] +docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"] +tests = ["attrs[tests-no-zope]", "zope-interface"] +tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"] +tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"] + [[package]] name = "babel" version = "2.14.0" description = "Internationalization utilities" -optional = true +optional = false python-versions = ">=3.7" files = [ {file = "Babel-2.14.0-py3-none-any.whl", hash = "sha256:efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287"}, @@ -41,19 +60,22 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] [[package]] name = "beautifulsoup4" -version = "4.12.2" +version = "4.12.3" description = "Screen-scraping library" optional = true python-versions = ">=3.6.0" files = [ - {file = "beautifulsoup4-4.12.2-py3-none-any.whl", hash = "sha256:bd2520ca0d9d7d12694a53d44ac482d181b4ec1888909b035a3dbf40d0f57d4a"}, - {file = "beautifulsoup4-4.12.2.tar.gz", hash = "sha256:492bbc69dca35d12daac71c4db1bfff0c876c00ef4a2ffacce226d4638eb72da"}, + {file = "beautifulsoup4-4.12.3-py3-none-any.whl", hash = "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"}, + {file = "beautifulsoup4-4.12.3.tar.gz", hash = "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051"}, ] [package.dependencies] soupsieve = ">1.2" [package.extras] +cchardet = ["cchardet"] +chardet = ["chardet"] +charset-normalizer = ["charset-normalizer"] html5lib = ["html5lib"] lxml = ["lxml"] @@ -224,7 +246,7 @@ tests = ["astropy", "hypothesis", "pytest (>=3.9)", "pytest-cov", "pytest-remote name = "certifi" version = "2023.11.17" description = "Python package for providing Mozilla's CA Bundle." -optional = true +optional = false python-versions = ">=3.6" files = [ {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"}, @@ -246,7 +268,7 @@ files = [ name = "charset-normalizer" version = "3.3.2" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -optional = true +optional = false python-versions = ">=3.7.0" files = [ {file = "charset-normalizer-3.3.2.tar.gz", hash = "sha256:f30c3cb33b24454a82faecaf01b19c18562b1e89558fb6c56de4d9118a032fd5"}, @@ -345,7 +367,7 @@ files = [ name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -optional = true +optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"}, @@ -419,6 +441,17 @@ tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.1 [package.extras] toml = ["tomli"] +[[package]] +name = "deepmerge" +version = "1.1.1" +description = "a toolset to deeply merge python dictionaries." +optional = false +python-versions = "*" +files = [ + {file = "deepmerge-1.1.1-py3-none-any.whl", hash = "sha256:7219dad9763f15be9dcd4bcb53e00f48e4eed6f5ed8f15824223eb934bb35977"}, + {file = "deepmerge-1.1.1.tar.gz", hash = "sha256:53a489dc9449636e480a784359ae2aab3191748c920649551c8e378622f0eca4"}, +] + [[package]] name = "distlib" version = "0.3.8" @@ -434,7 +467,7 @@ files = [ name = "docutils" version = "0.20.1" description = "Docutils -- Python Documentation Utilities" -optional = true +optional = false python-versions = ">=3.7" files = [ {file = "docutils-0.20.1-py3-none-any.whl", hash = "sha256:96f387a2c5562db4476f09f13bbab2192e764cac08ebbf3a34a95d9b1e4a59d6"}, @@ -500,7 +533,7 @@ license = ["ukkonen"] name = "idna" version = "3.6" description = "Internationalized Domain Names in Applications (IDNA)" -optional = true +optional = false python-versions = ">=3.5" files = [ {file = "idna-3.6-py3-none-any.whl", hash = "sha256:c05567e9c24a6b9faaa835c4821bad0590fbb9d5779e7caa6e1cc4978e7eb24f"}, @@ -511,7 +544,7 @@ files = [ name = "imagesize" version = "1.4.1" description = "Getting image 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"sha256:3c22b6824681762b6c3fcad86dfd18960a617bccbc7f456ce21b43a20e455fb9"}, - {file = "xarray-2023.12.0.tar.gz", hash = "sha256:4565dbc890de47e278346c44d6b33bb07d3427383e077a7ca8ab6606196fd433"}, + {file = "xarray-2024.1.0-py3-none-any.whl", hash = "sha256:df040f835441babf0a04c0bd6eacf7780f7dad6044a86603b16f6b4d204a99bd"}, + {file = "xarray-2024.1.0.tar.gz", hash = "sha256:56b4bcb7c7be2e31143608261c1608c0e52579b8a51ba1b240bc2509e04d28d0"}, ] [package.dependencies] -numpy = ">=1.22" -packaging = ">=21.3" -pandas = ">=1.4" +numpy = ">=1.23" +packaging = ">=22" +pandas = ">=1.5" [package.extras] accel = ["bottleneck", "flox", "numbagg", "opt-einsum", "scipy"] @@ -1383,7 +1662,7 @@ viz = ["matplotlib", "nc-time-axis", "seaborn"] name = "zipp" version = "3.17.0" description = "Backport of pathlib-compatible object wrapper for zip files" -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"}, @@ -1403,4 +1682,4 @@ tools = ["openpyxl", "pandas"] [metadata] lock-version = "2.0" python-versions = ">=3.9,<4" -content-hash = "5dc2bdccbc4f4400c10f4cb517b798ef28bd2291a429f31c93a29cadc2eb1881" +content-hash = "8d597eb5a2697651878f1d1c6ee32bacf2a993ca815c50710fd57377443672a6" diff --git a/pyproject.toml b/pyproject.toml index 975bee0df..77de1cf9a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -46,6 +46,7 @@ pytest = {version=">=6.2.5", optional=true} pytest-cov = {version="^4.0.0", optional=true} ruff = {version=">=0.1.7", optional=true} sphinx = {version="*", optional=true} +sphinxcontrib-openapi = "^0.8.3" [tool.poetry.extras] dev = ["pre-commit", "ruff"]