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Currently enrichment allows you to pass in:
enrichment
-U
The command can also be run in ontology-only mode, where instead of genes we just summarize commonalities among terms
It would be handy to pass in the terms as sample set on the command line. Many commands accept @ as a break, so we could allow for:
@
ontie --stacktrace enrichment --ontology-only -p i i^ONTIE: @ [ .all .not i^ONTIE: ]
This enriches IDs in the ONTIE space against those in the non-ONTIE space in the ONTIE ontology
The text was updated successfully, but these errors were encountered:
Fixes #770
30abfb6
d56db0e
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Currently
enrichment
allows you to pass in:-U
The command can also be run in ontology-only mode, where instead of genes we just summarize commonalities among terms
It would be handy to pass in the terms as sample set on the command line. Many commands accept
@
as a break, so we could allow for:ontie --stacktrace enrichment --ontology-only -p i i^ONTIE: @ [ .all .not i^ONTIE: ]
This enriches IDs in the ONTIE space against those in the non-ONTIE space in the ONTIE ontology
The text was updated successfully, but these errors were encountered: