[2016-09-02T16:47:51.646+0200] [glassfish 4.1] [SEVERE] [] [edu.harvard.iq.dataverse.DataCiteRESTfullClient] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671646] [levelValue: 1000] [[ Response code: 400, [xml] xml error: The entity "nbsp" was referenced, but not declared.]] [2016-09-02T16:47:51.647+0200] [glassfish 4.1] [WARNING] [AS-EJB-00056] [javax.enterprise.ejb.container] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671647] [levelValue: 900] [[ A system exception occurred during an invocation on EJB DOIDataCiteRegisterService, method: public java.lang.String edu.harvard.iq.dataverse.DOIDataCiteRegisterService.createIdentifier(java.lang.String,java.util.HashMap,edu.harvard.iq.dataverse.Dataset) throws java.io.IOException]] [2016-09-02T16:47:51.647+0200] [glassfish 4.1] [WARNING] [] [javax.enterprise.ejb.container] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671647] [levelValue: 900] [[ javax.ejb.TransactionRolledbackLocalException: Exception thrown from bean at com.sun.ejb.containers.EJBContainerTransactionManager.checkExceptionClientTx(EJBContainerTransactionManager.java:662) at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:507) at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4566) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2074) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2044) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88) at com.sun.proxy.$Proxy245.createIdentifier(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_Generated__DOIDataCiteRegisterService__Intf____Bean__.createIdentifier(Unknown Source) at edu.harvard.iq.dataverse.DOIDataCiteServiceBean.updateIdentifierStatus(DOIDataCiteServiceBean.java:262) at edu.harvard.iq.dataverse.DOIDataCiteServiceBean.publicizeIdentifier(DOIDataCiteServiceBean.java:253) at sun.reflect.GeneratedMethodAccessor922.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:64) at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at sun.reflect.GeneratedMethodAccessor98.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at sun.reflect.GeneratedMethodAccessor99.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88) at com.sun.proxy.$Proxy204.publicizeIdentifier(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_Generated__DOIDataCiteServiceBean__Intf____Bean__.publicizeIdentifier(Unknown Source) at edu.harvard.iq.dataverse.engine.command.impl.PublishDatasetCommand.execute(PublishDatasetCommand.java:220) at edu.harvard.iq.dataverse.engine.command.impl.PublishDatasetCommand.execute(PublishDatasetCommand.java:37) at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:184) at sun.reflect.GeneratedMethodAccessor640.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:64) at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at sun.reflect.GeneratedMethodAccessor98.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at sun.reflect.GeneratedMethodAccessor99.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88) at com.sun.proxy.$Proxy214.submit(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_Generated__EjbDataverseEngine__Intf____Bean__.submit(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.releaseDataset(DatasetPage.java:2047) at edu.harvard.iq.dataverse.DatasetPage.releaseDataset(DatasetPage.java:1951) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.el.parser.AstValue.invoke(AstValue.java:289) at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:304) at org.jboss.weld.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40) at org.jboss.weld.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50) at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:105) at javax.faces.component.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:87) at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:102) at javax.faces.component.UICommand.broadcast(UICommand.java:315) at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:790) at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1282) at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:81) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101) at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:198) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:646) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214) at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:295) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:205) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160) at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673) at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:415) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:282) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545) at java.lang.Thread.run(Thread.java:745) Caused by: java.lang.RuntimeException: Response code: 400, [xml] xml error: The entity "nbsp" was referenced, but not declared. at edu.harvard.iq.dataverse.DataCiteRESTfullClient.postMetadata(DataCiteRESTfullClient.java:183) at edu.harvard.iq.dataverse.DOIDataCiteRegisterService.createIdentifier(DOIDataCiteRegisterService.java:89) at sun.reflect.GeneratedMethodAccessor790.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:64) at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at sun.reflect.GeneratedMethodAccessor98.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at sun.reflect.GeneratedMethodAccessor99.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) ... 126 more ]] [2016-09-02T16:47:51.648+0200] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.DOIDataCiteServiceBean] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671648] [levelValue: 800] [[ modifyMetadata failed]] [2016-09-02T16:47:51.648+0200] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.DOIDataCiteServiceBean] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671648] [levelValue: 800] [[ String javax.ejb.EJBTransactionRolledbackException]] [2016-09-02T16:47:51.649+0200] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.DOIDataCiteServiceBean] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671649] [levelValue: 800] [[ localized message null]] [2016-09-02T16:47:51.649+0200] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.DOIDataCiteServiceBean] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671649] [levelValue: 800] [[ cause javax.ejb.TransactionRolledbackLocalException: Exception thrown from bean]] [2016-09-02T16:47:51.649+0200] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.DOIDataCiteServiceBean] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671649] [levelValue: 800] [[ message null]] [2016-09-02T16:47:51.649+0200] [glassfish 4.1] [WARNING] [AS-EJB-00056] [javax.enterprise.ejb.container] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671649] [levelValue: 900] [[ A system exception occurred during an invocation on EJB DOIDataCiteServiceBean, method: public void edu.harvard.iq.dataverse.DOIDataCiteServiceBean.publicizeIdentifier(edu.harvard.iq.dataverse.Dataset) throws java.lang.Exception]] [2016-09-02T16:47:51.649+0200] [glassfish 4.1] [WARNING] [] [javax.enterprise.ejb.container] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671649] [levelValue: 900] [[ javax.ejb.TransactionRolledbackLocalException: Exception thrown from bean at com.sun.ejb.containers.EJBContainerTransactionManager.checkExceptionClientTx(EJBContainerTransactionManager.java:662) at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:507) at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4566) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2074) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2044) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88) at com.sun.proxy.$Proxy204.publicizeIdentifier(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_Generated__DOIDataCiteServiceBean__Intf____Bean__.publicizeIdentifier(Unknown Source) at edu.harvard.iq.dataverse.engine.command.impl.PublishDatasetCommand.execute(PublishDatasetCommand.java:220) at edu.harvard.iq.dataverse.engine.command.impl.PublishDatasetCommand.execute(PublishDatasetCommand.java:37) at edu.harvard.iq.dataverse.EjbDataverseEngine.submit(EjbDataverseEngine.java:184) at sun.reflect.GeneratedMethodAccessor640.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:64) at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at sun.reflect.GeneratedMethodAccessor98.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at sun.reflect.GeneratedMethodAccessor99.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88) at com.sun.proxy.$Proxy214.submit(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_Generated__EjbDataverseEngine__Intf____Bean__.submit(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.releaseDataset(DatasetPage.java:2047) at edu.harvard.iq.dataverse.DatasetPage.releaseDataset(DatasetPage.java:1951) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.el.parser.AstValue.invoke(AstValue.java:289) at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:304) at org.jboss.weld.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40) at org.jboss.weld.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50) at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:105) at javax.faces.component.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:87) at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:102) at javax.faces.component.UICommand.broadcast(UICommand.java:315) at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:790) at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1282) at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:81) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101) at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:198) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:646) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214) at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:295) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:205) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160) at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673) at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:415) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:282) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:459) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:167) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:201) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:175) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:235) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:284) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:201) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:133) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:112) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:561) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:112) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:117) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:56) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:137) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:565) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:545) at java.lang.Thread.run(Thread.java:745) Caused by: javax.ejb.EJBTransactionRolledbackException at com.sun.ejb.containers.BaseContainer.mapLocal3xException(BaseContainer.java:2342) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2123) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2044) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88) at com.sun.proxy.$Proxy245.createIdentifier(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_Generated__DOIDataCiteRegisterService__Intf____Bean__.createIdentifier(Unknown Source) at edu.harvard.iq.dataverse.DOIDataCiteServiceBean.updateIdentifierStatus(DOIDataCiteServiceBean.java:262) at edu.harvard.iq.dataverse.DOIDataCiteServiceBean.publicizeIdentifier(DOIDataCiteServiceBean.java:253) at sun.reflect.GeneratedMethodAccessor922.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:64) at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at sun.reflect.GeneratedMethodAccessor98.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at sun.reflect.GeneratedMethodAccessor99.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) ... 93 more Caused by: javax.ejb.TransactionRolledbackLocalException: Exception thrown from bean at com.sun.ejb.containers.EJBContainerTransactionManager.checkExceptionClientTx(EJBContainerTransactionManager.java:662) at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:507) at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4566) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2074) ... 128 more Caused by: java.lang.RuntimeException: Response code: 400, [xml] xml error: The entity "nbsp" was referenced, but not declared. at edu.harvard.iq.dataverse.DataCiteRESTfullClient.postMetadata(DataCiteRESTfullClient.java:183) at edu.harvard.iq.dataverse.DOIDataCiteRegisterService.createIdentifier(DOIDataCiteRegisterService.java:89) at sun.reflect.GeneratedMethodAccessor790.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4786) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:656) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:64) at org.jboss.weld.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at sun.reflect.GeneratedMethodAccessor98.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:608) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at sun.reflect.GeneratedMethodAccessor99.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4758) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4746) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) ... 126 more ]] [2016-09-02T16:47:51.659+0200] [glassfish 4.1] [SEVERE] [] [edu.harvard.iq.dataverse.DatasetPage] [tid: _ThreadID=29 _ThreadName=http-listener-1(4)] [timeMillis: 1472827671659] [levelValue: 1000] [[ This dataset may not be published because the DataCite Service is currently inaccessible. Please try again. Does the issue continue to persist?]] [2016-09-02T16:47:51.710+0200] [glassfish 4.1] [FINE] [] [edu.harvard.iq.dataverse.DatasetPage] [tid: _ThreadID=26 _ThreadName=http-listener-1(1)] [timeMillis: 1472827671710] [levelValue: 500] [CLASSNAME: edu.harvard.iq.dataverse.DatasetPage] [METHODNAME: init] [[ initializing DatasetPage with persistent ID doi:10.5072/dshs_2016/5CZDFT]] [2016-09-02T16:47:51.738+0200] [glassfish 4.1] [FINE] [] [edu.harvard.iq.dataverse.DatasetPage] [tid: _ThreadID=26 _ThreadName=http-listener-1(1)] [timeMillis: 1472827671738] [levelValue: 500] [CLASSNAME: edu.harvard.iq.dataverse.DatasetPage] [METHODNAME: init] [[ retrived dataset, id=367]] [2016-09-02T16:47:51.742+0200] [glassfish 4.1] [INFO] [] [edu.harvard.iq.dataverse.DatasetPage] [tid: _ThreadID=26 _ThreadName=http-listener-1(1)] [timeMillis: 1472827671742] [levelValue: 800] [[ retreived version: id: 253, state: DRAFT]] [2016-09-02T16:47:51.747+0200] [glassfish 4.1] [FINE] [] [edu.harvard.iq.dataverse.authorization.groups.impl.shib.ShibGroupServiceBean] [tid: _ThreadID=26 _ThreadName=http-listener-1(1)] [timeMillis: 1472827671747] [levelValue: 500] [CLASSNAME: edu.harvard.iq.dataverse.authorization.groups.impl.shib.ShibGroupServiceBean] [METHODNAME: findFor] [[ IdP for user @dataverseAdmin is null]] [2016-09-02T16:47:51.792+0200] [glassfish 4.1] [FINE] [] [edu.harvard.iq.dataverse.authorization.groups.impl.shib.ShibGroupServiceBean] [tid: _ThreadID=26 _ThreadName=http-listener-1(1)] [timeMillis: 1472827671792] [levelValue: 500] [CLASSNAME: edu.harvard.iq.dataverse.authorization.groups.impl.shib.ShibGroupServiceBean] [METHODNAME: findFor] [[ IdP for user @dataverseAdmin is null]] [2016-09-02T16:47:51.970+0200] [glassfish 4.1] [FINE] [] [edu.harvard.iq.dataverse.EditDatafilesPage] [tid: _ThreadID=26 _ThreadName=http-listener-1(1)] [timeMillis: 1472827671970] [levelValue: 500] [CLASSNAME: edu.harvard.iq.dataverse.EditDatafilesPage] [METHODNAME: initCreateMode] [[ Request to initialize Edit Files page with token (aborting).]]