Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/shared/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/shared], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Jun 27 2016 18:13:17 UTC Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.68.0 Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Linux Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 4.4.0-45-generic Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: amd64 Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: /usr/lib/jvm/java-8-openjdk-amd64/jre Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_111-8u111-b14-2ubuntu0.16.04.2-b14 Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: /var/lib/tomcat7 Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: /usr/share/tomcat7 Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat7/conf/logging.properties Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.awt.headless=true Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx128m Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:+UseConcMarkSweepGC Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=/usr/share/tomcat7/endorsed Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=/var/lib/tomcat7 Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=/usr/share/tomcat7 Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=/tmp/tomcat7-tomcat7-tmp Nov 23, 2016 7:07:30 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 303 ms Nov 23, 2016 7:07:30 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Nov 23, 2016 7:07:30 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT Nov 23, 2016 7:07:30 PM org.apache.catalina.core.StandardContext setPath WARNING: A context path must either be an empty string or start with a '/' and do not end with a '/'. The path [/] does not meet these criteria and has been changed to [] Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /var/lib/tomcat7/webapps/ROOT has finished in 358 ms Nov 23, 2016 7:07:30 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:07:30 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 383 ms Nov 23, 2016 7:07:40 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml Nov 23, 2016 7:07:40 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:07:40 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml has finished in 193 ms Nov 23, 2016 7:07:40 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml Nov 23, 2016 7:07:41 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:07:41 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml has finished in 134 ms Nov 23, 2016 7:19:57 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:19:57 PM org.apache.catalina.core.StandardService stopInternal INFO: Stopping service Catalina Nov 23, 2016 7:19:57 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:19:57 PM org.apache.coyote.AbstractProtocol destroy INFO: Destroying ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:19:57 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:19:57 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:19:57 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:19:57 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Jun 27 2016 18:13:17 UTC Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.68.0 Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Linux Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 4.4.0-45-generic Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: amd64 Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: /usr/lib/jvm/java-8-openjdk-amd64/jre Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_111-8u111-b14-2ubuntu0.16.04.2-b14 Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: /var/lib/tomcat7 Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: /usr/share/tomcat7 Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat7/conf/logging.properties Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.awt.headless=true Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx128m Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:+UseConcMarkSweepGC Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=/usr/share/tomcat7/endorsed Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=/var/lib/tomcat7 Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=/usr/share/tomcat7 Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=/tmp/tomcat7-tomcat7-tmp Nov 23, 2016 7:19:58 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 331 ms Nov 23, 2016 7:19:58 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Nov 23, 2016 7:19:58 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml has finished in 374 ms Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml has finished in 177 ms Nov 23, 2016 7:19:58 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fits.war Nov 23, 2016 7:19:59 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: /usr/share/tomcat7/logs/fits-service.log (No such file or directory) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(FileOutputStream.java:270) at java.io.FileOutputStream.(FileOutputStream.java:213) at java.io.FileOutputStream.(FileOutputStream.java:133) at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:207) at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) at org.apache.log4j.PropertyConfigurator.configureRootCategory(PropertyConfigurator.java:648) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:514) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) at org.apache.log4j.LogManager.(LogManager.java:127) at org.apache.log4j.Logger.getLogger(Logger.java:117) at edu.harvard.hul.ois.fits.service.servlets.FitsServlet.(FitsServlet.java:73) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.lang.Class.newInstance(Class.java:442) at org.apache.catalina.core.DefaultInstanceManager.newInstance(DefaultInstanceManager.java:114) at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1146) at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1085) at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5318) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5610) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Nov 23, 2016 7:19:59 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fits.war has finished in 637 ms Nov 23, 2016 7:19:59 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT Nov 23, 2016 7:19:59 PM org.apache.catalina.core.StandardContext setPath WARNING: A context path must either be an empty string or start with a '/' and do not end with a '/'. The path [/] does not meet these criteria and has been changed to [] Nov 23, 2016 7:19:59 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:19:59 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /var/lib/tomcat7/webapps/ROOT has finished in 401 ms Nov 23, 2016 7:19:59 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:19:59 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 1620 ms Nov 23, 2016 7:58:01 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:58:01 PM org.apache.catalina.core.StandardService stopInternal INFO: Stopping service Catalina Nov 23, 2016 7:58:01 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:58:01 PM org.apache.coyote.AbstractProtocol destroy INFO: Destroying ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:58:01 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:58:01 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:58:01 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:58:01 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Jun 27 2016 18:13:17 UTC Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.68.0 Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Linux Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 4.4.0-45-generic Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: amd64 Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: /usr/lib/jvm/java-8-openjdk-amd64/jre Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_111-8u111-b14-2ubuntu0.16.04.2-b14 Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: /var/lib/tomcat7 Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: /usr/share/tomcat7 Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat7/conf/logging.properties Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.awt.headless=true Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx128m Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:+UseConcMarkSweepGC Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=/usr/share/tomcat7/endorsed Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=/var/lib/tomcat7 Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=/usr/share/tomcat7 Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=/tmp/tomcat7-tomcat7-tmp Nov 23, 2016 7:58:02 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 310 ms Nov 23, 2016 7:58:02 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Nov 23, 2016 7:58:02 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml has finished in 352 ms Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml has finished in 163 ms Nov 23, 2016 7:58:02 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fits.war Nov 23, 2016 7:58:03 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: /usr/share/tomcat7/logs/fits-service.log (No such file or directory) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(FileOutputStream.java:270) at java.io.FileOutputStream.(FileOutputStream.java:213) at java.io.FileOutputStream.(FileOutputStream.java:133) at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:207) at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) at org.apache.log4j.PropertyConfigurator.configureRootCategory(PropertyConfigurator.java:648) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:514) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) at org.apache.log4j.LogManager.(LogManager.java:127) at org.apache.log4j.Logger.getLogger(Logger.java:117) at edu.harvard.hul.ois.fits.service.servlets.FitsServlet.(FitsServlet.java:73) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.lang.Class.newInstance(Class.java:442) at org.apache.catalina.core.DefaultInstanceManager.newInstance(DefaultInstanceManager.java:114) at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1146) at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1085) at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5318) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5610) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Nov 23, 2016 7:58:03 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fits.war has finished in 519 ms Nov 23, 2016 7:58:03 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/solr.war Nov 23, 2016 7:58:04 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:58:06 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/solr.war has finished in 3,006 ms Nov 23, 2016 7:58:06 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT Nov 23, 2016 7:58:06 PM org.apache.catalina.core.StandardContext setPath WARNING: A context path must either be an empty string or start with a '/' and do not end with a '/'. The path [/] does not meet these criteria and has been changed to [] Nov 23, 2016 7:58:06 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 7:58:06 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /var/lib/tomcat7/webapps/ROOT has finished in 345 ms Nov 23, 2016 7:58:06 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Nov 23, 2016 7:58:06 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 4420 ms Nov 23, 2016 8:32:34 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:32:34 PM org.apache.catalina.core.StandardService stopInternal INFO: Stopping service Catalina Nov 23, 2016 8:32:34 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:32:34 PM org.apache.coyote.AbstractProtocol destroy INFO: Destroying ProtocolHandler ["http-bio-8080"] OpenJDK 64-Bit Server VM warning: ignoring option PermSize=256m; support was removed in 8.0 OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=256m; support was removed in 8.0 Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Jun 27 2016 18:13:17 UTC Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.68.0 Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Linux Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 4.4.0-45-generic Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: amd64 Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: /usr/lib/jvm/java-8-openjdk-amd64/jre Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_111-8u111-b14-2ubuntu0.16.04.2-b14 Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: /var/lib/tomcat7 Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: /usr/share/tomcat7 Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat7/conf/logging.properties Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.awt.headless=true Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfile.encoding=UTF-8 Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms512m Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx1024m Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:NewSize=256m Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:MaxNewSize=256m Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:PermSize=256m Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:MaxPermSize=256m Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=classpath:/config/minimal-default/repository.json Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=/usr/share/tomcat7/endorsed Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=/var/lib/tomcat7 Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=/usr/share/tomcat7 Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=/tmp/tomcat7-tomcat7-tmp Nov 23, 2016 8:32:34 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 324 ms Nov 23, 2016 8:32:34 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Nov 23, 2016 8:32:34 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 8:32:34 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml Nov 23, 2016 8:32:35 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:32:35 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml has finished in 319 ms Nov 23, 2016 8:32:35 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml Nov 23, 2016 8:32:35 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:32:35 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml has finished in 145 ms Nov 23, 2016 8:32:35 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fcrepo.war Nov 23, 2016 8:32:37 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/share/tomcat7/lib/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/opt/fits/lib/slf4j-log4j12-1.7.12.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/lib/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. 20:32:37,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy] 20:32:37,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 20:32:37,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/logback.xml] 20:32:37,816 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs multiple times on the classpath. 20:32:37,816 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/logback.xml] 20:32:37,816 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [jar:file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/lib/fcrepo-webapp-4.7.0-classes.jar!/logback.xml] 20:32:37,907 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - debug attribute not set 20:32:37,909 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 20:32:37,915 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT] 20:32:37,928 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 20:32:37,954 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.auth] to null, i.e. INHERITED 20:32:37,954 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.auth] to false 20:32:37,954 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.auth] 20:32:37,954 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.connector.file] to null, i.e. INHERITED 20:32:37,954 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.connector.file] to false 20:32:37,954 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.connector.file] 20:32:37,954 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.http.api] to null, i.e. INHERITED 20:32:37,954 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.http.api] to false 20:32:37,955 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.http.api] 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.http.commons] to null, i.e. INHERITED 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.http.commons] to false 20:32:37,955 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.http.commons] 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.jms] to null, i.e. INHERITED 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.jms] to false 20:32:37,955 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.jms] 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.kernel] to null, i.e. INHERITED 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.kernel] to false 20:32:37,955 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.kernel] 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.transform] to null, i.e. INHERITED 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.transform] to false 20:32:37,955 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.transform] 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo] to INFO 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo] to false 20:32:37,955 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo] 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.RootLoggerAction - Setting level of ROOT logger to WARN 20:32:37,955 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[ROOT] 20:32:37,955 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration. 20:32:37,956 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4488fab5 - Registering current configuration as safe fallback point SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder] WARN 20:32:38.742 (XmlWebApplicationContext) Exception encountered during context initialization - cancelling refresh attempt org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'modeshapeRepofactory': Invocation of init method failed; nested exception is org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1560) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:706) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.http.commons.FedoraContextLoaderListener.contextInitialized(FedoraContextLoaderListener.java:40) [fcrepo-http-commons-4.7.0.jar:4.7.0] at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) [tomcat-catalina-7.0.68.jar:7.0.68] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_111] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_111] at java.lang.Thread.run(Thread.java:745) [na:1.8.0_111] Caused by: org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:82) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_111] at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_111] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] ... 28 common frames omitted Caused by: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.core.io.ClassPathResource.getURL(ClassPathResource.java:187) ~[spring-core-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:67) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] ... 35 common frames omitted ERROR 20:32:38.745 (ContextLoader) Context initialization failed org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'modeshapeRepofactory': Invocation of init method failed; nested exception is org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1560) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:706) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403) ~[spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306) ~[spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.http.commons.FedoraContextLoaderListener.contextInitialized(FedoraContextLoaderListener.java:40) [fcrepo-http-commons-4.7.0.jar:4.7.0] at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) [tomcat-catalina-7.0.68.jar:7.0.68] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_111] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_111] at java.lang.Thread.run(Thread.java:745) [na:1.8.0_111] Caused by: org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:82) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_111] at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_111] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] ... 28 common frames omitted Caused by: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.core.io.ClassPathResource.getURL(ClassPathResource.java:187) ~[spring-core-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:67) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] ... 35 common frames omitted Nov 23, 2016 8:32:38 PM org.apache.catalina.core.StandardContext startInternal SEVERE: One or more listeners failed to start. Full details will be found in the appropriate container log file Nov 23, 2016 8:32:38 PM org.apache.catalina.core.StandardContext startInternal SEVERE: Context [/fcrepo] startup failed due to previous errors Nov 23, 2016 8:32:38 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fcrepo.war has finished in 3,573 ms Nov 23, 2016 8:32:38 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fits.war Nov 23, 2016 8:32:39 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: /usr/share/tomcat7/logs/fits-service.log (No such file or directory) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(FileOutputStream.java:270) at java.io.FileOutputStream.(FileOutputStream.java:213) at java.io.FileOutputStream.(FileOutputStream.java:133) at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:207) at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) at org.apache.log4j.PropertyConfigurator.configureRootCategory(PropertyConfigurator.java:648) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:514) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) at org.apache.log4j.LogManager.(LogManager.java:127) at org.apache.log4j.Logger.getLogger(Logger.java:117) at edu.harvard.hul.ois.fits.service.servlets.FitsServlet.(FitsServlet.java:73) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.lang.Class.newInstance(Class.java:442) at org.apache.catalina.core.DefaultInstanceManager.newInstance(DefaultInstanceManager.java:114) at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1146) at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1085) at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5318) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5610) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Nov 23, 2016 8:32:39 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fits.war has finished in 425 ms Nov 23, 2016 8:32:39 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/solr.war Nov 23, 2016 8:32:40 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:32:42 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/solr.war has finished in 3,409 ms Nov 23, 2016 8:32:42 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT Nov 23, 2016 8:32:42 PM org.apache.catalina.core.StandardContext setPath WARNING: A context path must either be an empty string or start with a '/' and do not end with a '/'. The path [/] does not meet these criteria and has been changed to [] Nov 23, 2016 8:32:43 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:32:43 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /var/lib/tomcat7/webapps/ROOT has finished in 570 ms Nov 23, 2016 8:32:43 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:32:43 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 8484 ms Nov 23, 2016 8:32:49 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:32:49 PM org.apache.catalina.core.StandardService stopInternal INFO: Stopping service Catalina Nov 23, 2016 8:32:49 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:32:49 PM org.apache.coyote.AbstractProtocol destroy INFO: Destroying ProtocolHandler ["http-bio-8080"] OpenJDK 64-Bit Server VM warning: ignoring option PermSize=256m; support was removed in 8.0 OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=256m; support was removed in 8.0 Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Jun 27 2016 18:13:17 UTC Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.68.0 Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Linux Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 4.4.0-45-generic Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: amd64 Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: /usr/lib/jvm/java-8-openjdk-amd64/jre Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_111-8u111-b14-2ubuntu0.16.04.2-b14 Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: /var/lib/tomcat7 Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: /usr/share/tomcat7 Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat7/conf/logging.properties Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.awt.headless=true Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfile.encoding=UTF-8 Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms512m Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx1024m Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:NewSize=256m Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:MaxNewSize=256m Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:PermSize=256m Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:MaxPermSize=256m Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=classpath:/config/minimal-default/repository.json Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=CATALINA_OPTS= Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=classpath:/config/minimal-default/repository.json Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=/usr/share/tomcat7/endorsed Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=/var/lib/tomcat7 Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=/usr/share/tomcat7 Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=/tmp/tomcat7-tomcat7-tmp Nov 23, 2016 8:32:49 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 277 ms Nov 23, 2016 8:32:49 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Nov 23, 2016 8:32:49 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 8:32:49 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml Nov 23, 2016 8:32:50 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:32:50 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml has finished in 345 ms Nov 23, 2016 8:32:50 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml Nov 23, 2016 8:32:50 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:32:50 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml has finished in 146 ms Nov 23, 2016 8:32:50 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fcrepo.war Nov 23, 2016 8:32:52 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/share/tomcat7/lib/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/opt/fits/lib/slf4j-log4j12-1.7.12.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/lib/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. 20:32:52,670 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy] 20:32:52,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 20:32:52,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/logback.xml] 20:32:52,671 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs multiple times on the classpath. 20:32:52,671 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/logback.xml] 20:32:52,671 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [jar:file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/lib/fcrepo-webapp-4.7.0-classes.jar!/logback.xml] 20:32:52,753 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - debug attribute not set 20:32:52,755 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 20:32:52,760 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT] 20:32:52,771 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.auth] to null, i.e. INHERITED 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.auth] to false 20:32:52,795 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.auth] 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.connector.file] to null, i.e. INHERITED 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.connector.file] to false 20:32:52,795 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.connector.file] 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.http.api] to null, i.e. INHERITED 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.http.api] to false 20:32:52,795 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.http.api] 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.http.commons] to null, i.e. INHERITED 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.http.commons] to false 20:32:52,795 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.http.commons] 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.jms] to null, i.e. INHERITED 20:32:52,795 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.jms] to false 20:32:52,795 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.jms] 20:32:52,796 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.kernel] to null, i.e. INHERITED 20:32:52,796 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.kernel] to false 20:32:52,796 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.kernel] 20:32:52,796 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.transform] to null, i.e. INHERITED 20:32:52,796 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.transform] to false 20:32:52,796 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.transform] 20:32:52,796 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo] to INFO 20:32:52,796 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo] to false 20:32:52,796 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo] 20:32:52,796 |-INFO in ch.qos.logback.classic.joran.action.RootLoggerAction - Setting level of ROOT logger to WARN 20:32:52,796 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[ROOT] 20:32:52,796 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration. 20:32:52,797 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@73ae6f05 - Registering current configuration as safe fallback point SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder] WARN 20:32:53.510 (XmlWebApplicationContext) Exception encountered during context initialization - cancelling refresh attempt org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'modeshapeRepofactory': Invocation of init method failed; nested exception is org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1560) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:706) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.http.commons.FedoraContextLoaderListener.contextInitialized(FedoraContextLoaderListener.java:40) [fcrepo-http-commons-4.7.0.jar:4.7.0] at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) [tomcat-catalina-7.0.68.jar:7.0.68] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_111] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_111] at java.lang.Thread.run(Thread.java:745) [na:1.8.0_111] Caused by: org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:82) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_111] at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_111] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] ... 28 common frames omitted Caused by: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.core.io.ClassPathResource.getURL(ClassPathResource.java:187) ~[spring-core-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:67) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] ... 35 common frames omitted ERROR 20:32:53.513 (ContextLoader) Context initialization failed org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'modeshapeRepofactory': Invocation of init method failed; nested exception is org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1560) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:706) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403) ~[spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306) ~[spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.http.commons.FedoraContextLoaderListener.contextInitialized(FedoraContextLoaderListener.java:40) [fcrepo-http-commons-4.7.0.jar:4.7.0] at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) [tomcat-catalina-7.0.68.jar:7.0.68] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_111] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_111] at java.lang.Thread.run(Thread.java:745) [na:1.8.0_111] Caused by: org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:82) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_111] at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_111] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] ... 28 common frames omitted Caused by: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.core.io.ClassPathResource.getURL(ClassPathResource.java:187) ~[spring-core-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:67) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] ... 35 common frames omitted Nov 23, 2016 8:32:53 PM org.apache.catalina.core.StandardContext startInternal SEVERE: One or more listeners failed to start. Full details will be found in the appropriate container log file Nov 23, 2016 8:32:53 PM org.apache.catalina.core.StandardContext startInternal SEVERE: Context [/fcrepo] startup failed due to previous errors Nov 23, 2016 8:32:53 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fcrepo.war has finished in 3,207 ms Nov 23, 2016 8:32:53 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fits.war Nov 23, 2016 8:32:53 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: /usr/share/tomcat7/logs/fits-service.log (No such file or directory) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(FileOutputStream.java:270) at java.io.FileOutputStream.(FileOutputStream.java:213) at java.io.FileOutputStream.(FileOutputStream.java:133) at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:207) at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) at org.apache.log4j.PropertyConfigurator.configureRootCategory(PropertyConfigurator.java:648) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:514) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) at org.apache.log4j.LogManager.(LogManager.java:127) at org.apache.log4j.Logger.getLogger(Logger.java:117) at edu.harvard.hul.ois.fits.service.servlets.FitsServlet.(FitsServlet.java:73) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.lang.Class.newInstance(Class.java:442) at org.apache.catalina.core.DefaultInstanceManager.newInstance(DefaultInstanceManager.java:114) at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1146) at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1085) at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5318) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5610) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Nov 23, 2016 8:32:53 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fits.war has finished in 390 ms Nov 23, 2016 8:32:53 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/solr.war Nov 23, 2016 8:32:54 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:32:56 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/solr.war has finished in 2,476 ms Nov 23, 2016 8:32:56 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT Nov 23, 2016 8:32:56 PM org.apache.catalina.core.StandardContext setPath WARNING: A context path must either be an empty string or start with a '/' and do not end with a '/'. The path [/] does not meet these criteria and has been changed to [] Nov 23, 2016 8:32:56 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:32:56 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /var/lib/tomcat7/webapps/ROOT has finished in 309 ms Nov 23, 2016 8:32:56 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:32:56 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 6909 ms Nov 23, 2016 8:52:27 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:52:28 PM org.apache.catalina.core.StandardService stopInternal INFO: Stopping service Catalina Nov 23, 2016 8:52:28 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:52:28 PM org.apache.coyote.AbstractProtocol destroy INFO: Destroying ProtocolHandler ["http-bio-8080"] OpenJDK 64-Bit Server VM warning: ignoring option PermSize=256m; support was removed in 8.0 OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=256m; support was removed in 8.0 Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Jun 27 2016 18:13:17 UTC Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.68.0 Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Linux Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 4.4.0-45-generic Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: amd64 Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: /usr/lib/jvm/java-8-openjdk-amd64/jre Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_111-8u111-b14-2ubuntu0.16.04.2-b14 Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: /var/lib/tomcat7 Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: /usr/share/tomcat7 Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat7/conf/logging.properties Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.awt.headless=true Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfile.encoding=UTF-8 Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms512m Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx1024m Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:NewSize=256m Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:MaxNewSize=256m Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:PermSize=256m Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:MaxPermSize=256m Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcom.bigdata.rdf.sail.webapp.ConfigParams.propertyFile=/var/lib/tomcat7/webapps/bigdata/WEB-INF/RWStore.properties Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=classpath:/config/minimal-default/repository.json Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=CATALINA_OPTS= Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=classpath:/config/minimal-default/repository.json Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=/usr/share/tomcat7/endorsed Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=/var/lib/tomcat7 Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=/usr/share/tomcat7 Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=/tmp/tomcat7-tomcat7-tmp Nov 23, 2016 8:52:28 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 310 ms Nov 23, 2016 8:52:28 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Nov 23, 2016 8:52:28 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml has finished in 323 ms Nov 23, 2016 8:52:28 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml Nov 23, 2016 8:52:29 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:52:29 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml has finished in 145 ms Nov 23, 2016 8:52:29 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fcrepo.war Nov 23, 2016 8:52:31 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/share/tomcat7/lib/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/opt/fits/lib/slf4j-log4j12-1.7.12.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/lib/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. 20:52:31,426 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy] 20:52:31,426 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 20:52:31,426 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/logback.xml] 20:52:31,427 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs multiple times on the classpath. 20:52:31,427 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/logback.xml] 20:52:31,427 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [jar:file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/lib/fcrepo-webapp-4.7.0-classes.jar!/logback.xml] 20:52:31,517 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - debug attribute not set 20:52:31,519 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 20:52:31,524 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT] 20:52:31,538 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 20:52:31,562 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.auth] to null, i.e. INHERITED 20:52:31,562 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.auth] to false 20:52:31,562 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.auth] 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.connector.file] to null, i.e. INHERITED 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.connector.file] to false 20:52:31,563 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.connector.file] 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.http.api] to null, i.e. INHERITED 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.http.api] to false 20:52:31,563 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.http.api] 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.http.commons] to null, i.e. INHERITED 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.http.commons] to false 20:52:31,563 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.http.commons] 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.jms] to null, i.e. INHERITED 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.jms] to false 20:52:31,563 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.jms] 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.kernel] to null, i.e. INHERITED 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.kernel] to false 20:52:31,563 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.kernel] 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.transform] to null, i.e. INHERITED 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.transform] to false 20:52:31,563 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.transform] 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo] to INFO 20:52:31,563 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo] to false 20:52:31,563 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo] 20:52:31,564 |-INFO in ch.qos.logback.classic.joran.action.RootLoggerAction - Setting level of ROOT logger to WARN 20:52:31,564 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[ROOT] 20:52:31,564 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration. 20:52:31,564 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@73ae6f05 - Registering current configuration as safe fallback point SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder] WARN 20:52:32.274 (XmlWebApplicationContext) Exception encountered during context initialization - cancelling refresh attempt org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'modeshapeRepofactory': Invocation of init method failed; nested exception is org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1560) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:706) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.http.commons.FedoraContextLoaderListener.contextInitialized(FedoraContextLoaderListener.java:40) [fcrepo-http-commons-4.7.0.jar:4.7.0] at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) [tomcat-catalina-7.0.68.jar:7.0.68] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_111] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_111] at java.lang.Thread.run(Thread.java:745) [na:1.8.0_111] Caused by: org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:82) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_111] at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_111] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] ... 28 common frames omitted Caused by: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.core.io.ClassPathResource.getURL(ClassPathResource.java:187) ~[spring-core-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:67) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] ... 35 common frames omitted ERROR 20:52:32.277 (ContextLoader) Context initialization failed org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'modeshapeRepofactory': Invocation of init method failed; nested exception is org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1560) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:706) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403) ~[spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306) ~[spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.http.commons.FedoraContextLoaderListener.contextInitialized(FedoraContextLoaderListener.java:40) [fcrepo-http-commons-4.7.0.jar:4.7.0] at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) [tomcat-catalina-7.0.68.jar:7.0.68] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_111] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_111] at java.lang.Thread.run(Thread.java:745) [na:1.8.0_111] Caused by: org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:82) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_111] at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_111] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] ... 28 common frames omitted Caused by: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.core.io.ClassPathResource.getURL(ClassPathResource.java:187) ~[spring-core-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:67) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] ... 35 common frames omitted Nov 23, 2016 8:52:32 PM org.apache.catalina.core.StandardContext startInternal SEVERE: One or more listeners failed to start. Full details will be found in the appropriate container log file Nov 23, 2016 8:52:32 PM org.apache.catalina.core.StandardContext startInternal SEVERE: Context [/fcrepo] startup failed due to previous errors Nov 23, 2016 8:52:32 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fcrepo.war has finished in 3,241 ms Nov 23, 2016 8:52:32 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fits.war Nov 23, 2016 8:52:32 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: /usr/share/tomcat7/logs/fits-service.log (No such file or directory) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(FileOutputStream.java:270) at java.io.FileOutputStream.(FileOutputStream.java:213) at java.io.FileOutputStream.(FileOutputStream.java:133) at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) at org.apache.log4j.RollingFileAppender.setFile(RollingFileAppender.java:207) at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) at org.apache.log4j.PropertyConfigurator.configureRootCategory(PropertyConfigurator.java:648) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:514) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) at org.apache.log4j.LogManager.(LogManager.java:127) at org.apache.log4j.Logger.getLogger(Logger.java:117) at edu.harvard.hul.ois.fits.service.servlets.FitsServlet.(FitsServlet.java:73) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.lang.Class.newInstance(Class.java:442) at org.apache.catalina.core.DefaultInstanceManager.newInstance(DefaultInstanceManager.java:114) at org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1146) at org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1085) at org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:5318) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5610) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Nov 23, 2016 8:52:32 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fits.war has finished in 397 ms Nov 23, 2016 8:52:32 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/bigdata.war Nov 23, 2016 8:52:33 PM org.apache.catalina.deploy.WebXml setVersion WARNING: Unknown version string [3.1]. Default version will be used. Nov 23, 2016 8:52:35 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: rules.log (Permission denied) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(FileOutputStream.java:270) at java.io.FileOutputStream.(FileOutputStream.java:213) at java.io.FileOutputStream.(FileOutputStream.java:133) at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) at org.apache.log4j.PropertyConfigurator.parseCatsAndRenderers(PropertyConfigurator.java:672) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:516) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) at org.apache.log4j.LogManager.(LogManager.java:127) at org.apache.log4j.Logger.getLogger(Logger.java:117) at com.bigdata.rdf.sail.webapp.BigdataRDFServletContextListener.(BigdataRDFServletContextListener.java:90) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:423) at java.lang.Class.newInstance(Class.java:442) at org.apache.catalina.core.DefaultInstanceManager.newInstance(DefaultInstanceManager.java:114) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4984) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) log4j:ERROR setFile(null,true) call failed. java.io.FileNotFoundException: rules.log (Permission denied) at java.io.FileOutputStream.open0(Native Method) at java.io.FileOutputStream.open(FileOutputStream.java:270) at java.io.FileOutputStream.(FileOutputStream.java:213) at java.io.FileOutputStream.(FileOutputStream.java:133) at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) at org.apache.log4j.PropertyConfigurator.parseCatsAndRenderers(PropertyConfigurator.java:672) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:516) at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) at org.apache.log4j.PropertyConfigurator.configure(PropertyConfigurator.java:415) at com.bigdata.util.config.LogUtil.(LogUtil.java:162) at com.bigdata.Banner.setDefaultLogLevel(Banner.java:250) at com.bigdata.Banner.(Banner.java:510) at com.bigdata.rdf.sail.webapp.BigdataRDFServletContextListener.contextInitialized(BigdataRDFServletContextListener.java:157) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) INFO: com.bigdata.util.config.LogUtil: Configure: file:/var/lib/tomcat7/webapps/bigdata/WEB-INF/classes/log4j.properties BlazeGraph(TM) Graph Engine Flexible Reliable Affordable Web-Scale Computing for the Enterprise Copyright SYSTAP, LLC DBA Blazegraph 2006-2016. All rights reserved. islandora-deux Wed Nov 23 20:52:35 UTC 2016 Linux/4.4.0-45-generic amd64 Intel(R) Core(TM) i7-4980HQ CPU @ 2.80GHz Family 6 Model 70 Stepping 1, GenuineIntel #CPU=3 Oracle Corporation 1.8.0_111 freeMemory=311722200 buildVersion=2.1.4 gitCommit=738d05f08cffd319233a4bfbb0ec2a858e260f9c Dependency License ICU http://source.icu-project.org/repos/icu/icu/trunk/license.html bigdata-ganglia http://www.apache.org/licenses/LICENSE-2.0.html blueprints-core https://github.com/tinkerpop/blueprints/blob/master/LICENSE.txt colt http://acs.lbl.gov/software/colt/license.html commons-codec http://www.apache.org/licenses/LICENSE-2.0.html commons-fileupload http://www.apache.org/licenses/LICENSE-2.0.html commons-io http://www.apache.org/licenses/LICENSE-2.0.html commons-logging http://www.apache.org/licenses/LICENSE-2.0.html dsiutils http://www.gnu.org/licenses/lgpl-2.1.html fastutil http://www.apache.org/licenses/LICENSE-2.0.html flot http://www.opensource.org/licenses/mit-license.php high-scale-lib http://creativecommons.org/licenses/publicdomain httpclient http://www.apache.org/licenses/LICENSE-2.0.html httpclient-cache http://www.apache.org/licenses/LICENSE-2.0.html httpcore http://www.apache.org/licenses/LICENSE-2.0.html httpmime http://www.apache.org/licenses/LICENSE-2.0.html jackson-core http://www.apache.org/licenses/LICENSE-2.0.html jetty http://www.apache.org/licenses/LICENSE-2.0.html jquery https://github.com/jquery/jquery/blob/master/MIT-LICENSE.txt jsonld https://raw.githubusercontent.com/jsonld-java/jsonld-java/master/LICENCE log4j http://www.apache.org/licenses/LICENSE-2.0.html lucene http://www.apache.org/licenses/LICENSE-2.0.html nanohttp http://elonen.iki.fi/code/nanohttpd/#license rexster-core https://github.com/tinkerpop/rexster/blob/master/LICENSE.txt river http://www.apache.org/licenses/LICENSE-2.0.html semargl https://github.com/levkhomich/semargl/blob/master/LICENSE servlet-api http://www.apache.org/licenses/LICENSE-2.0.html sesame http://www.openrdf.org/download.jsp slf4j http://www.slf4j.org/license.html zookeeper http://www.apache.org/licenses/LICENSE-2.0.html Nov 23, 2016 8:52:35 PM org.apache.catalina.core.StandardContext startInternal SEVERE: One or more listeners failed to start. Full details will be found in the appropriate container log file Nov 23, 2016 8:52:35 PM org.apache.catalina.core.StandardContext startInternal SEVERE: Context [/bigdata] startup failed due to previous errors Nov 23, 2016 8:52:35 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/bigdata.war has finished in 2,487 ms Nov 23, 2016 8:52:35 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/solr.war Nov 23, 2016 8:52:36 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:52:38 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/solr.war has finished in 3,686 ms Nov 23, 2016 8:52:38 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT Nov 23, 2016 8:52:38 PM org.apache.catalina.core.StandardContext setPath WARNING: A context path must either be an empty string or start with a '/' and do not end with a '/'. The path [/] does not meet these criteria and has been changed to [] Nov 23, 2016 8:52:39 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 8:52:39 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /var/lib/tomcat7/webapps/ROOT has finished in 318 ms Nov 23, 2016 8:52:39 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Nov 23, 2016 8:52:39 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 10637 ms Nov 23, 2016 9:08:26 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 9:08:26 PM org.apache.catalina.core.StandardService stopInternal INFO: Stopping service Catalina Nov 23, 2016 9:08:26 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["http-bio-8080"] Nov 23, 2016 9:08:26 PM org.apache.coyote.AbstractProtocol destroy INFO: Destroying ProtocolHandler ["http-bio-8080"] OpenJDK 64-Bit Server VM warning: ignoring option PermSize=256m; support was removed in 8.0 OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=256m; support was removed in 8.0 Nov 23, 2016 9:08:26 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 9:08:26 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/common], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 9:08:26 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server/classes], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 9:08:26 PM org.apache.catalina.startup.ClassLoaderFactory validateFile WARNING: Problem with directory [/usr/share/tomcat7/server], exists: [false], isDirectory: [false], canRead: [false] Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Jun 27 2016 18:13:17 UTC Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.68.0 Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Linux Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 4.4.0-45-generic Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: amd64 Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: /usr/lib/jvm/java-8-openjdk-amd64/jre Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_111-8u111-b14-2ubuntu0.16.04.2-b14 Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: /var/lib/tomcat7 Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: /usr/share/tomcat7 Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=/var/lib/tomcat7/conf/logging.properties Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.awt.headless=true Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfile.encoding=UTF-8 Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms512m Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx1024m Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:NewSize=256m Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:MaxNewSize=256m Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:PermSize=256m Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -XX:MaxPermSize=256m Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcom.bigdata.rdf.sail.webapp.ConfigParams.propertyFile=/var/lib/tomcat7/webapps/bigdata/WEB-INF/RWStore.properties Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=classpath:/config/minimal-default/repository.json Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=CATALINA_OPTS= Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dfcrepo.modeshape.configuration=classpath:/config/minimal-default/repository.json Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=/usr/share/tomcat7/endorsed Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=/var/lib/tomcat7 Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=/usr/share/tomcat7 Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=/tmp/tomcat7-tomcat7-tmp Nov 23, 2016 9:08:27 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 310 ms Nov 23, 2016 9:08:27 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Nov 23, 2016 9:08:27 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.68 (Ubuntu) Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/manager.xml has finished in 341 ms Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deployment of configuration descriptor /etc/tomcat7/Catalina/localhost/host-manager.xml has finished in 153 ms Nov 23, 2016 9:08:27 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fcrepo.war Nov 23, 2016 9:08:30 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/share/tomcat7/lib/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/opt/fits/lib/slf4j-log4j12-1.7.12.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/lib/logback-classic-1.1.2.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. 21:08:30,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy] 21:08:30,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 21:08:30,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/logback.xml] 21:08:30,619 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs multiple times on the classpath. 21:08:30,619 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/classes/logback.xml] 21:08:30,619 |-WARN in ch.qos.logback.classic.LoggerContext[default] - Resource [logback.xml] occurs at [jar:file:/var/lib/tomcat7/webapps/fcrepo/WEB-INF/lib/fcrepo-webapp-4.7.0-classes.jar!/logback.xml] 21:08:30,797 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - debug attribute not set 21:08:30,800 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 21:08:30,810 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [STDOUT] 21:08:30,834 |-INFO in ch.qos.logback.core.joran.action.NestedComplexPropertyIA - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 21:08:30,881 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.auth] to null, i.e. INHERITED 21:08:30,882 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.auth] to false 21:08:30,882 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.auth] 21:08:30,882 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.connector.file] to null, i.e. INHERITED 21:08:30,882 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.connector.file] to false 21:08:30,882 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.connector.file] 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.http.api] to null, i.e. INHERITED 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.http.api] to false 21:08:30,883 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.http.api] 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.http.commons] to null, i.e. INHERITED 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.http.commons] to false 21:08:30,883 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.http.commons] 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.jms] to null, i.e. INHERITED 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.jms] to false 21:08:30,883 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.jms] 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.kernel] to null, i.e. INHERITED 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.kernel] to false 21:08:30,883 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.kernel] 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo.transform] to null, i.e. INHERITED 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo.transform] to false 21:08:30,883 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo.transform] 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting level of logger [org.fcrepo] to INFO 21:08:30,883 |-INFO in ch.qos.logback.classic.joran.action.LoggerAction - Setting additivity of logger [org.fcrepo] to false 21:08:30,884 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[org.fcrepo] 21:08:30,884 |-INFO in ch.qos.logback.classic.joran.action.RootLoggerAction - Setting level of ROOT logger to WARN 21:08:30,884 |-INFO in ch.qos.logback.core.joran.action.AppenderRefAction - Attaching appender named [STDOUT] to Logger[ROOT] 21:08:30,884 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - End of configuration. 21:08:30,885 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@73ae6f05 - Registering current configuration as safe fallback point SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder] WARN 21:08:32.405 (XmlWebApplicationContext) Exception encountered during context initialization - cancelling refresh attempt org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'modeshapeRepofactory': Invocation of init method failed; nested exception is org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1560) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:706) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.http.commons.FedoraContextLoaderListener.contextInitialized(FedoraContextLoaderListener.java:40) [fcrepo-http-commons-4.7.0.jar:4.7.0] at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) [tomcat-catalina-7.0.68.jar:7.0.68] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_111] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_111] at java.lang.Thread.run(Thread.java:745) [na:1.8.0_111] Caused by: org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:82) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_111] at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_111] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] ... 28 common frames omitted Caused by: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.core.io.ClassPathResource.getURL(ClassPathResource.java:187) ~[spring-core-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:67) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] ... 35 common frames omitted ERROR 21:08:32.409 (ContextLoader) Context initialization failed org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'modeshapeRepofactory': Invocation of init method failed; nested exception is org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:408) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1560) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:540) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:476) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:706) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:757) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:480) ~[spring-context-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:403) ~[spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:306) ~[spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:106) [spring-web-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.http.commons.FedoraContextLoaderListener.contextInitialized(FedoraContextLoaderListener.java:40) [fcrepo-http-commons-4.7.0.jar:4.7.0] at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5068) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5584) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:899) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:875) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:652) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1091) [tomcat-catalina-7.0.68.jar:7.0.68] at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1980) [tomcat-catalina-7.0.68.jar:7.0.68] at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_111] at java.util.concurrent.FutureTask.run(FutureTask.java:266) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_111] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_111] at java.lang.Thread.run(Thread.java:745) [na:1.8.0_111] Caused by: org.fcrepo.kernel.api.exception.RepositoryRuntimeException: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:82) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_111] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_111] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_111] at java.lang.reflect.Method.invoke(Method.java:498) ~[na:1.8.0_111] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:349) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:300) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:133) ~[spring-beans-4.1.1.RELEASE.jar:4.1.1.RELEASE] ... 28 common frames omitted Caused by: java.io.FileNotFoundException: class path resource [config/minimal-default/repository.json] cannot be resolved to URL because it does not exist at org.springframework.core.io.ClassPathResource.getURL(ClassPathResource.java:187) ~[spring-core-4.1.1.RELEASE.jar:4.1.1.RELEASE] at org.fcrepo.kernel.modeshape.spring.ModeShapeRepositoryFactoryBean.buildRepository(ModeShapeRepositoryFactoryBean.java:67) ~[fcrepo-kernel-modeshape-4.7.0.jar:4.7.0] ... 35 common frames omitted Nov 23, 2016 9:08:32 PM org.apache.catalina.core.StandardContext startInternal SEVERE: One or more listeners failed to start. Full details will be found in the appropriate container log file Nov 23, 2016 9:08:32 PM org.apache.catalina.core.StandardContext startInternal SEVERE: Context [/fcrepo] startup failed due to previous errors Nov 23, 2016 9:08:32 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fcrepo.war has finished in 4,609 ms Nov 23, 2016 9:08:32 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/fits.war Nov 23, 2016 9:08:33 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 9:08:33 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/fits.war has finished in 675 ms Nov 23, 2016 9:08:33 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/bigdata.war Nov 23, 2016 9:08:33 PM org.apache.catalina.deploy.WebXml setVersion WARNING: Unknown version string [3.1]. Default version will be used. Nov 23, 2016 9:08:35 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. INFO: com.bigdata.util.config.LogUtil: Configure: file:/var/lib/tomcat7/webapps/bigdata/WEB-INF/classes/log4j.properties BlazeGraph(TM) Graph Engine Flexible Reliable Affordable Web-Scale Computing for the Enterprise Copyright SYSTAP, LLC DBA Blazegraph 2006-2016. All rights reserved. islandora-deux Wed Nov 23 21:08:35 UTC 2016 Linux/4.4.0-45-generic amd64 Intel(R) Core(TM) i7-4980HQ CPU @ 2.80GHz Family 6 Model 70 Stepping 1, GenuineIntel #CPU=3 Oracle Corporation 1.8.0_111 freeMemory=319557136 buildVersion=2.1.4 gitCommit=738d05f08cffd319233a4bfbb0ec2a858e260f9c Dependency License ICU http://source.icu-project.org/repos/icu/icu/trunk/license.html bigdata-ganglia http://www.apache.org/licenses/LICENSE-2.0.html blueprints-core https://github.com/tinkerpop/blueprints/blob/master/LICENSE.txt colt http://acs.lbl.gov/software/colt/license.html commons-codec http://www.apache.org/licenses/LICENSE-2.0.html commons-fileupload http://www.apache.org/licenses/LICENSE-2.0.html commons-io http://www.apache.org/licenses/LICENSE-2.0.html commons-logging http://www.apache.org/licenses/LICENSE-2.0.html dsiutils http://www.gnu.org/licenses/lgpl-2.1.html fastutil http://www.apache.org/licenses/LICENSE-2.0.html flot http://www.opensource.org/licenses/mit-license.php high-scale-lib http://creativecommons.org/licenses/publicdomain httpclient http://www.apache.org/licenses/LICENSE-2.0.html httpclient-cache http://www.apache.org/licenses/LICENSE-2.0.html httpcore http://www.apache.org/licenses/LICENSE-2.0.html httpmime http://www.apache.org/licenses/LICENSE-2.0.html jackson-core http://www.apache.org/licenses/LICENSE-2.0.html jetty http://www.apache.org/licenses/LICENSE-2.0.html jquery https://github.com/jquery/jquery/blob/master/MIT-LICENSE.txt jsonld https://raw.githubusercontent.com/jsonld-java/jsonld-java/master/LICENCE log4j http://www.apache.org/licenses/LICENSE-2.0.html lucene http://www.apache.org/licenses/LICENSE-2.0.html nanohttp http://elonen.iki.fi/code/nanohttpd/#license rexster-core https://github.com/tinkerpop/rexster/blob/master/LICENSE.txt river http://www.apache.org/licenses/LICENSE-2.0.html semargl https://github.com/levkhomich/semargl/blob/master/LICENSE servlet-api http://www.apache.org/licenses/LICENSE-2.0.html sesame http://www.openrdf.org/download.jsp slf4j http://www.slf4j.org/license.html zookeeper http://www.apache.org/licenses/LICENSE-2.0.html SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/share/tomcat7/lib/slf4j-log4j12-1.7.6.jar!/org/slf4j/impl/StaticLoggerBinder.class]WARN : ServiceProviderHook.java:171: Running. SLF4J: Found binding in [jar:file:/opt/fits/lib/slf4j-log4j12-1.7.12.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/var/lib/tomcat7/webapps/bigdata/WEB-INF/lib/slf4j-log4j12-1.6.1.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. SLF4J: The following loggers will not work becasue they were created SLF4J: during the default configuration phase of the underlying logging system. SLF4J: See also http://www.slf4j.org/codes.html#substituteLogger SLF4J: org.openrdf.rio.RDFParserRegistry Nov 23, 2016 9:08:36 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/bigdata.war has finished in 3,000 ms Nov 23, 2016 9:08:36 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive /var/lib/tomcat7/webapps/solr.war Nov 23, 2016 9:08:37 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 9:08:39 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive /var/lib/tomcat7/webapps/solr.war has finished in 3,543 ms Nov 23, 2016 9:08:39 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory /var/lib/tomcat7/webapps/ROOT Nov 23, 2016 9:08:39 PM org.apache.catalina.core.StandardContext setPath WARNING: A context path must either be an empty string or start with a '/' and do not end with a '/'. The path [/] does not meet these criteria and has been changed to [] Nov 23, 2016 9:08:39 PM org.apache.catalina.startup.TldConfig execute INFO: At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time. Nov 23, 2016 9:08:40 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory /var/lib/tomcat7/webapps/ROOT has finished in 330 ms Nov 23, 2016 9:08:40 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Nov 23, 2016 9:08:40 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 12700 ms