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Update FV3, NEMS (ufs-community#21)
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 FV3 is updated to include the following:
* fv3atm issue ufs-community#37: fix the real(8) lat/lon in netcdf file
* fv3atm ufs-community#35: Reducing background vertical diffusivities in the inversion layers
* fv3atm ufs-community#24: bug in gfsphysics/physics/moninedmf_hafs.f
* fv3atm ufs-community#18: Optimize netcdf write component and bugfix for post and samfdeepcnv.f
* set (0-1) bounds for ficein_cpl
* remove cache_size due to lower netcdf verion 4.5.1 on mars
* Change ice falling to 0.9 in gfsphysics/physics/gfdl_cloud_microphys.F90

NEMS is updated to remove ice-ocean merge in prep_atm:
* The following fields are now exported to FV3 as ice-only fields:
 mean_sensi_heat_flx
 mean_laten_heat_flx
 mean_up_lw_flx
 mean_evap_rate
 mean_zonal_moment_flx
 mean_merid_moment_flx

MOM6 is updated to GFDL's 20200108 dev/master:
* MOM6 adds field in MOM.res_1.nc (kg_m3_to_R). All other files are reproducible with previous baseline
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@DeniseWorthen @JessicaMeixner-NOAA
DeniseWorthen authored and JessicaMeixner-NOAA committed Feb 3, 2020
1 parent cb186b6 commit 85197b7
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Showing 8 changed files with 1,019 additions and 1,016 deletions.
2 changes: 1 addition & 1 deletion FV3
Submodule FV3 updated 18 files
+2 −0 .gitmodules
+1 −1 atmos_model.F90
+1 −1 ccpp/framework
+1 −1 ccpp/physics
+1 −1 gfsphysics/physics/gfdl_cloud_microphys.F90
+0 −0 gfsphysics/physics/module_sf_noahmp_glacier.f90
+0 −0 gfsphysics/physics/module_sf_noahmplsm.f90
+0 −0 gfsphysics/physics/module_wrf_utl.f90
+5 −1 gfsphysics/physics/moninedmf_hafs.f
+0 −0 gfsphysics/physics/noahmp_tables.f90
+14 −14 gfsphysics/physics/samfdeepcnv.f
+7 −4 gfsphysics/physics/satmedmfvdifq.f
+0 −0 gfsphysics/physics/sfc_noahmp_drv.f
+1 −1 io/FV3GFS_io.F90
+1 −1 io/module_write_nemsio.F90
+61 −54 io/module_write_netcdf.F90
+42 −22 io/module_wrt_grid_comp.F90
+11 −3 io/post_gfs.F90
2 changes: 1 addition & 1 deletion MOM6
Submodule MOM6 updated 1 files
+1 −1 src/MOM6
2 changes: 1 addition & 1 deletion NEMS
Submodule NEMS updated 1 files
+16 −16 src/module_MEDIATOR.F90
4 changes: 2 additions & 2 deletions compsets/hera.input
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Original file line number Diff line number Diff line change
Expand Up @@ -26,8 +26,8 @@ platform hera.intel {
# INPUTS is the input directory, which should contain fix and parm
# files, plus any restarts or other inputs.

BASELINE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20191125"
BASELINE_TEMPLATE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20191125"
BASELINE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"
BASELINE_TEMPLATE="/scratch1/NCEPDEV/nems/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"
INPUTS="@[BASELINE]"

default_resources={
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12 changes: 6 additions & 6 deletions compsets/wcoss.input
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Original file line number Diff line number Diff line change
Expand Up @@ -26,8 +26,8 @@ platform wcoss.phase2 {
LONG_TEST_QUEUE='&LONGQ;'
BUILD_QUEUE='&BUILDQ;'
MACHINE_ID='wcoss.phase2'
BASELINE="/nems/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20191125"
BASELINE_TEMPLATE="/nems/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20191125"
BASELINE="/nems/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"
BASELINE_TEMPLATE="/nems/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"

default_resources={
#TPN=8
Expand Down Expand Up @@ -253,8 +253,8 @@ platform wcoss_dell_p3 {
LONG_TEST_QUEUE='&LONGQ;'
BUILD_QUEUE='&BUILDQ;'

BASELINE="/gpfs/dell2/emc/modeling/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20191025"
BASELINE_TEMPLATE="/gpfs/dell2/emc/modeling/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20191025"
BASELINE="/gpfs/dell2/emc/modeling/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"
BASELINE_TEMPLATE="/gpfs/dell2/emc/modeling/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"

default_resources={
TASKS=156
Expand Down Expand Up @@ -374,8 +374,8 @@ platform wcoss.cray {
BUILD_WALLTIME="3600"
DEFAULT_TEST_WALLTIME=1800

BASELINE="/gpfs/hps3/emc/nems/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20191025"
BASELINE_TEMPLATE="/gpfs/hps3/emc/nems/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20191025"
BASELINE="/gpfs/hps3/emc/nems/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"
BASELINE_TEMPLATE="/gpfs/hps3/emc/nems/noscrub/emc.nemspara/RT/FV3-MOM6-CICE5/master-20200128"

execution_time_modules=[[[
module load alps
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1,949 changes: 974 additions & 975 deletions log/report-hera.intel-log/build_fv3_mom6_cice.exe.log
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Large diffs are not rendered by default.

62 changes: 32 additions & 30 deletions log/report-hera.intel-log/rtreport.txt
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@@ -1,14 +1,16 @@
Run rocotostat...
Generate report...
WORKFLOW STARTED AT Thu Jan 23 19:25:53 2020 (+1579807553)
WORKFLOW STARTED AT Mon Jan 27 23:35:01 2020 (+1580168101)
Repository information:


REPO TOP:
develop 6a9bf46 [origin/develop] Merge pull request #7 from ufs-community/develop
develop 2ac97e1 [origin/develop] Revert changes that were meant for a branch, not develop
Fetch URL: git@github.com:DeniseWorthen/ufs-s2s-model.git
M compsets/hera.input
M log/report-hera.intel-log/build_fv3_mom6_cice.exe.log
M log/report-hera.intel-log/rtreport.txt
M parm/REGTEST-FINGERPRINT.md

Entering 'CICE_SRC'
(HEAD detached at aafac32) aafac32 Code changes to support automatic debug compilation (#10)
Expand All @@ -19,15 +21,15 @@ Entering 'FMS'
Fetch URL: https://github.com/NOAA-EMC/FMS

Entering 'FV3'
(HEAD detached at b1ddd67) b1ddd67 Update EMC dev/emc from NCAR dtc/develop 2019/12/17 (#30)
(HEAD detached at 7ffe647) 7ffe647 GFSv16 netcdf post ficein cpl (#48)
Fetch URL: https://github.com/NOAA-EMC/fv3atm

Entering 'MOM6'
(HEAD detached at 575f570) 575f570 Code change to compile.sh enables the following: DEBUG flag is passed down as an environment variable. Subsequently, DEBUG or REPRO is automatically selected.
(HEAD detached at 1fd3493) 1fd3493 Merge pull request #9 from jiandewang/update-MOM6-20200108
Fetch URL: https://github.com/NOAA-EMC/MOM6-interface

Entering 'NEMS'
(HEAD detached at daae388) daae388 Code changes to support DEBUG compilation based on appBuilder specification (#23)
(HEAD detached at 044400a) 044400a remove ice-ocean merge in prep_atm (#24)
Fetch URL: https://github.com/NOAA-EMC/NEMS.git

Entering 'stochastic_physics'
Expand All @@ -38,8 +40,8 @@ Fetch URL: https://github.com/noaa-psd/stochastic_physics
BUILD fv3_mom6_cice.exe: SUCCEEDED

TEST #1: PASS
Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Thu Jan 23 19:44:34 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Thu Jan 23 19:44:34 UTC 2020
Test cpld_fv3_384_mom6_cice_2d_atm_flux starting at Mon Jan 27 23:54:15 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Mon Jan 27 23:54:15 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -112,14 +114,14 @@ TEST #1: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.365551/exec/fv3_mom6_cice.exe
Expected md5sum: d3522f375e2dc0b4bc54c8f1db83bdfa
Actual md5sum: d3522f375e2dc0b4bc54c8f1db83bdfa
TEST PASSED AT Thu Jan 23 20:30:29 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.411277/exec/fv3_mom6_cice.exe
Expected md5sum: a2a4965d803e33a3f5d56d6f30a10b0f
Actual md5sum: a2a4965d803e33a3f5d56d6f30a10b0f
TEST PASSED AT Tue Jan 28 00:39:55 UTC 2020

TEST #2: PASS
Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Thu Jan 23 19:44:41 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold 384)
Thu Jan 23 19:44:41 UTC 2020
Test cpld_fv3_384_mom6_cice_cold_atm_flux starting at Mon Jan 27 23:54:14 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold 384)
Mon Jan 27 23:54:14 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -175,14 +177,14 @@ TEST #2: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.365551/exec/fv3_mom6_cice.exe
Expected md5sum: d3522f375e2dc0b4bc54c8f1db83bdfa
Actual md5sum: d3522f375e2dc0b4bc54c8f1db83bdfa
TEST PASSED AT Thu Jan 23 19:50:16 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.411277/exec/fv3_mom6_cice.exe
Expected md5sum: a2a4965d803e33a3f5d56d6f30a10b0f
Actual md5sum: a2a4965d803e33a3f5d56d6f30a10b0f
TEST PASSED AT Mon Jan 27 23:59:53 UTC 2020

TEST #3: PASS
Test cpld_fv3_mom6_cice_cold_atm_flux starting at Thu Jan 23 19:44:51 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold start)
Thu Jan 23 19:44:51 UTC 2020
Test cpld_fv3_mom6_cice_cold_atm_flux starting at Mon Jan 27 23:54:20 UTC 2020 (Fully coupled FV3-MOM6-CICE system - cold start)
Mon Jan 27 23:54:20 UTC 2020
phyf001.tile1.nc: bit-for-bit identical
phyf001.tile2.nc: bit-for-bit identical
phyf001.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -238,14 +240,14 @@ TEST #3: PASS
mediator_FBOcn_o_restart.nc: bit-for-bit identical
mediator_scalars_restart.txt: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.365551/exec/fv3_mom6_cice.exe
Expected md5sum: d3522f375e2dc0b4bc54c8f1db83bdfa
Actual md5sum: d3522f375e2dc0b4bc54c8f1db83bdfa
TEST PASSED AT Thu Jan 23 19:47:49 UTC 2020
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.411277/exec/fv3_mom6_cice.exe
Expected md5sum: a2a4965d803e33a3f5d56d6f30a10b0f
Actual md5sum: a2a4965d803e33a3f5d56d6f30a10b0f
TEST PASSED AT Mon Jan 27 23:57:12 UTC 2020

TEST #4: PASS
Test cpld_fv3_mom6_cice_2d_atm_flux starting at Thu Jan 23 19:45:19 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Thu Jan 23 19:45:19 UTC 2020
Test cpld_fv3_mom6_cice_2d_atm_flux starting at Mon Jan 27 23:54:20 UTC 2020 (Fully coupled FV3-MOM6-CICE system - 2d_warm)
Mon Jan 27 23:54:20 UTC 2020
phyf048.tile1.nc: bit-for-bit identical
phyf048.tile2.nc: bit-for-bit identical
phyf048.tile3.nc: bit-for-bit identical
Expand Down Expand Up @@ -318,11 +320,11 @@ TEST #4: PASS
mediator_FBHyd_h_restart.nc: bit-for-bit identical
mediator_FBAtmOcn_o_restart.nc: bit-for-bit identical
Executable did not change during test suite:
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.365551/exec/fv3_mom6_cice.exe
Expected md5sum: d3522f375e2dc0b4bc54c8f1db83bdfa
Actual md5sum: d3522f375e2dc0b4bc54c8f1db83bdfa
TEST PASSED AT Thu Jan 23 20:12:13 UTC 2020
WORKFLOW REPORT AT Thu Jan 23 20:31:05 2020 (+1579811465)
File: /scratch1/NCEPDEV/stmp2/Denise.Worthen/RTs/rtgen.411277/exec/fv3_mom6_cice.exe
Expected md5sum: a2a4965d803e33a3f5d56d6f30a10b0f
Actual md5sum: a2a4965d803e33a3f5d56d6f30a10b0f
TEST PASSED AT Tue Jan 28 00:21:21 UTC 2020
WORKFLOW REPORT AT Tue Jan 28 00:41:15 2020 (+1580172075)
Tests: 0 failed, 4 passed out of 4
Builds: 0 failed, 1 passed out of 1
REGRESSION TEST WAS SUCCESSFUL
2 changes: 2 additions & 0 deletions parm/REGTEST-FINGERPRINT.md
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Expand Up @@ -84,3 +84,5 @@ Change log:
25c3321 stochastic_physics (heads/master)
* Nov. 20, 2019 FV3_input_data was synced with NEMSfv3gfs/trunk-20191109/FV3_input_data
Input templates were removed and fix file directories were cleaned up
* Jan. 28, 2020 FV3 ensures imported ice_fraction is in range (0-1), merges between
ice and ocean in prep_atm phase of mediator are removed

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