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One sample: Error in if (nrow > 0L && ncol > 0L) { : #4

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tiagochst opened this issue Jan 10, 2018 · 0 comments
Open

One sample: Error in if (nrow > 0L && ncol > 0L) { : #4

tiagochst opened this issue Jan 10, 2018 · 0 comments

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@tiagochst
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When I ran shinySummarize for one sample I get this error.

> idat
class: RGChannelSet 
dim: 1051815 1 
metadata(0):
assays(2): Green Red
rownames(1051815): 1600101 1600111 ... 99810990 99810992
rowData names(0):
colnames(1): 201530490013_R02C01
colData names(0):
Annotation
  array: IlluminaHumanMethylationEPIC
  annotation: ilm10b2.hg19
> shinyMethyl::shinySummarize(idat)
[shinySummarize] Extracting Red and Green channels 
[shinySummarize] Raw preprocessing 
[shinySummarize] Mapping to genome 
[shinySummarize] Computing quantiles 
Error in if (nrow > 0L && ncol > 0L) { : 
  missing value where TRUE/FALSE needed
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