From 28bafb69332829c143e002b1ad5a5c2400e3473e Mon Sep 17 00:00:00 2001 From: zia Date: Mon, 7 Oct 2013 11:21:47 -0400 Subject: [PATCH 1/2] Include the seriesUID in the mri_protocol_violated_scans table --- uploadNeuroDB/NeuroDB/MRI.pm | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/uploadNeuroDB/NeuroDB/MRI.pm b/uploadNeuroDB/NeuroDB/MRI.pm index 9973c8dd360..89e97b1f4ba 100755 --- a/uploadNeuroDB/NeuroDB/MRI.pm +++ b/uploadNeuroDB/NeuroDB/MRI.pm @@ -416,7 +416,7 @@ sub identify_scan_db { my $xspace = $${fileref}->getParameter('xspace'); my $yspace = $${fileref}->getParameter('yspace'); my $zspace = $${fileref}->getParameter('zspace'); - + my $seriesUID = $${fileref}->getParameter('SeriesUID'); my $slice_thickness = $${fileref}->getParameter('slice_thickness'); my $series_description = $${fileref}->getParameter('series_description'); @@ -519,8 +519,8 @@ sub insert_violated_scans { my $query; my $sth; - $sth = $${dbhr}->prepare("INSERT INTO mri_protocol_violated_scans (CandID,PSCID,time_run,series_description,minc_location,PatientName,TR_range,TE_range,TI_range,slice_thickness_range,xspace_range,yspace_range,zspace_range,xstep_range,ystep_range,zstep_range,time_range) VALUES (?,?,now(),?,?,?,?,?,?,?,?,?,?,?,?,?,?)"); - my $success = $sth->execute($candid,$pscid,$series_description,$minc_location,$patient_name,$tr,$te,$ti,$slice_thickness,$xspace,$yspace,$zspace,$xstep,$ystep,$zstep,$time); + $sth = $${dbhr}->prepare("INSERT INTO mri_protocol_violated_scans (CandID,PSCID,time_run,series_description,minc_location,PatientName,TR_range,TE_range,TI_range,slice_thickness_range,xspace_range,yspace_range,zspace_range,xstep_range,ystep_range,zstep_range,time_range,SeriesUID) VALUES (?,?,now(),?,?,?,?,?,?,?,?,?,?,?,?,?,?)"); + my $success = $sth->execute($candid,$pscid,$series_description,$minc_location,$patient_name,$tr,$te,$ti,$slice_thickness,$xspace,$yspace,$zspace,$xstep,$ystep,$zstep,$time,$seriesUID); } # ------------------------------ MNI Header ---------------------------------- From fdd3142c5d5c4d94c7a6573ceb9a4139b94ad1ab Mon Sep 17 00:00:00 2001 From: zia Date: Mon, 7 Oct 2013 16:46:00 -0400 Subject: [PATCH 2/2] Added the missing question mark --- uploadNeuroDB/NeuroDB/MRI.pm | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/uploadNeuroDB/NeuroDB/MRI.pm b/uploadNeuroDB/NeuroDB/MRI.pm index 89e97b1f4ba..06c6653d89b 100755 --- a/uploadNeuroDB/NeuroDB/MRI.pm +++ b/uploadNeuroDB/NeuroDB/MRI.pm @@ -519,7 +519,7 @@ sub insert_violated_scans { my $query; my $sth; - $sth = $${dbhr}->prepare("INSERT INTO mri_protocol_violated_scans (CandID,PSCID,time_run,series_description,minc_location,PatientName,TR_range,TE_range,TI_range,slice_thickness_range,xspace_range,yspace_range,zspace_range,xstep_range,ystep_range,zstep_range,time_range,SeriesUID) VALUES (?,?,now(),?,?,?,?,?,?,?,?,?,?,?,?,?,?)"); + $sth = $${dbhr}->prepare("INSERT INTO mri_protocol_violated_scans (CandID,PSCID,time_run,series_description,minc_location,PatientName,TR_range,TE_range,TI_range,slice_thickness_range,xspace_range,yspace_range,zspace_range,xstep_range,ystep_range,zstep_range,time_range,SeriesUID) VALUES (?,?,now(),?,?,?,?,?,?,?,?,?,?,?,?,?,?,?)"); my $success = $sth->execute($candid,$pscid,$series_description,$minc_location,$patient_name,$tr,$te,$ti,$slice_thickness,$xspace,$yspace,$zspace,$xstep,$ystep,$zstep,$time,$seriesUID); }