Julia Version 1.5.0-DEV.62
Commit c9d183757a (2020-01-13 22:37 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed LaTeXStrings ──────────────── v1.0.3
Installed Requires ──────────────────── v0.5.2
Installed Missings ──────────────────── v0.4.3
Installed Lazy ──────────────────────── v0.14.0
Installed Parsers ───────────────────── v0.3.10
Installed NamedTupleTools ───────────── v0.12.1
Installed ArviZ ─────────────────────── v0.2.4
Installed DataValues ────────────────── v0.4.13
Installed MacroTools ────────────────── v0.5.3
Installed JSON ──────────────────────── v0.21.0
Installed OrderedCollections ────────── v1.1.0
Installed FixedPointNumbers ─────────── v0.7.1
Installed Compat ────────────────────── v2.2.0
Installed Pandas ────────────────────── v1.3.0
Installed Colors ────────────────────── v0.11.2
Installed DataValueInterfaces ───────── v1.0.0
Installed StatsBase ─────────────────── v0.32.0
Installed ColorTypes ────────────────── v0.9.1
Installed DataStructures ────────────── v0.17.7
Installed PyCall ────────────────────── v1.91.2
Installed PyPlot ────────────────────── v2.8.2
Installed TableTraits ───────────────── v1.0.0
Installed TableTraitsUtils ──────────── v1.0.1
Installed Reexport ──────────────────── v0.2.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed VersionParsing ────────────── v1.2.0
Installed DataAPI ───────────────────── v1.1.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed Conda ─────────────────────── v1.3.0
Updating `~/.julia/environments/v1.5/Project.toml`
[131c737c] + ArviZ v0.2.4
Updating `~/.julia/environments/v1.5/Manifest.toml`
[131c737c] + ArviZ v0.2.4
[3da002f7] + ColorTypes v0.9.1
[5ae59095] + Colors v0.11.2
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.7
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.13
[53c48c17] + FixedPointNumbers v0.7.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[b964fa9f] + LaTeXStrings v1.0.3
[50d2b5c4] + Lazy v0.14.0
[1914dd2f] + MacroTools v0.5.3
[e1d29d7a] + Missings v0.4.3
[d9ec5142] + NamedTupleTools v0.12.1
[bac558e1] + OrderedCollections v1.1.0
[eadc2687] + Pandas v1.3.0
[69de0a69] + Parsers v0.3.10
[438e738f] + PyCall v1.91.2
[d330b81b] + PyPlot v2.8.2
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v0.5.2
[a2af1166] + SortingAlgorithms v0.3.1
[2913bbd2] + StatsBase v0.32.0
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[81def892] + VersionParsing v1.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Updating `/tmp/jl_HJs8Y7/Project.toml`
[no changes]
Updating `/tmp/jl_HJs8Y7/Manifest.toml`
[no changes]
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Updating `/tmp/jl_oGOWzk/Project.toml`
[no changes]
Updating `/tmp/jl_oGOWzk/Manifest.toml`
[no changes]
Testing ArviZ
Installed WoodburyMatrices ─────── v0.5.0
Installed GenericLinearAlgebra ─── v0.2.1
Installed FFTW ─────────────────── v1.2.0
Installed Polynomials ──────────── v0.6.0
Installed ForwardDiff ──────────── v0.10.8
Installed MCMCChains ───────────── v1.0.0
Installed PooledArrays ─────────── v0.5.3
Installed Ratios ───────────────── v0.3.1
Installed CommonSubexpressions ─── v0.2.0
Installed Arpack ───────────────── v0.4.0
Installed DiffEqDiffTools ──────── v1.7.0
Installed CategoricalArrays ────── v0.7.6
Installed CmdStan ──────────────── v5.5.0
Installed PDMats ───────────────── v0.9.10
Installed NaNMath ──────────────── v0.3.3
Installed OpenSpecFun_jll ──────── v0.5.3+1
Installed RecipesBase ──────────── v0.7.0
Installed FilePathsBase ────────── v0.7.0
Installed MonteCarloMeasurements ─ v0.5.8
Installed BinaryProvider ───────── v0.5.8
Installed GeometryTypes ────────── v0.7.7
Installed Documenter ───────────── v0.24.3
Installed IterTools ────────────── v1.3.0
Installed PlotThemes ───────────── v1.0.1
Installed LineSearches ─────────── v7.0.1
Installed Calculus ─────────────── v0.5.1
Installed QuadGK ───────────────── v2.3.1
Installed StaticArrays ─────────── v0.12.1
Installed AxisArrays ───────────── v0.3.3
Installed Distances ────────────── v0.8.2
Installed DocStringExtensions ──── v0.8.1
Installed ArrayInterface ───────── v2.3.1
Installed Showoff ──────────────── v0.3.1
Installed IntervalSets ─────────── v0.3.2
Installed PlotUtils ────────────── v0.6.2
Installed Combinatorics ────────── v1.0.0
Installed OffsetArrays ─────────── v0.11.4
Installed GR ───────────────────── v0.44.0
Installed Plots ────────────────── v0.27.1
Installed DiffResults ──────────── v1.0.2
Installed DiffRules ────────────── v1.0.0
Installed Distributions ────────── v0.21.12
Installed NamedArrays ──────────── v0.9.3
Installed Interpolations ───────── v0.12.6
Installed KernelDensity ────────── v0.5.1
Installed Contour ──────────────── v0.5.1
Installed AxisAlgorithms ───────── v1.0.0
Installed MKL_jll ──────────────── v2019.0.117+0
Installed Arpack_jll ───────────── v3.5.0+2
Installed AbstractMCMC ─────────── v0.1.0
Installed Rmath ────────────────── v0.6.0
Installed FFMPEG ───────────────── v0.2.4
Installed SpecialFunctions ─────── v0.9.0
Installed RangeArrays ──────────── v0.3.2
Installed AbstractFFTs ─────────── v0.5.0
Installed FFTW_jll ─────────────── v3.3.9+3
Installed DataFrames ───────────── v0.20.0
Installed FillArrays ───────────── v0.8.4
Installed IntelOpenMP_jll ──────── v2018.0.3+0
Installed Tables ───────────────── v0.2.11
Installed PositiveFactorizations ─ v0.2.3
Installed NLSolversBase ────────── v7.5.0
Installed Observables ──────────── v0.2.3
Installed Measures ─────────────── v0.3.1
Installed Clustering ───────────── v0.13.3
Installed Parameters ───────────── v0.12.0
Installed InvertedIndices ──────── v1.0.0
Installed StatsPlots ───────────── v0.12.0
Installed WeakRefStrings ───────── v0.6.2
Installed NearestNeighbors ─────── v0.4.4
Installed Optim ────────────────── v0.19.7
Installed StatsFuns ────────────── v0.9.3
Installed ProgressMeter ────────── v1.2.0
Installed Widgets ──────────────── v0.6.2
Installed OpenBLAS_jll ─────────── v0.3.7+4
Installed CSV ──────────────────── v0.5.22
Updating `/tmp/jl_TOSMy2/Project.toml`
[593b3428] + CmdStan v5.5.0
[c7f686f2] + MCMCChains v1.0.0
[0987c9cc] + MonteCarloMeasurements v0.5.8
Updating `/tmp/jl_TOSMy2/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[80f14c24] + AbstractMCMC v0.1.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.3.1
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[b99e7846] + BinaryProvider v0.5.8
[336ed68f] + CSV v0.5.22
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.6
[aaaa29a8] + Clustering v0.13.3
[593b3428] + CmdStan v5.5.0
[861a8166] + Combinatorics v1.0.0
[bbf7d656] + CommonSubexpressions v0.2.0
[d38c429a] + Contour v0.5.1
[a93c6f00] + DataFrames v0.20.0
[01453d9d] + DiffEqDiffTools v1.7.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.12
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.3
[c87230d0] + FFMPEG v0.2.4
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.4
[f6369f11] + ForwardDiff v0.10.8
[28b8d3ca] + GR v0.44.0
[14197337] + GenericLinearAlgebra v0.2.1
[4d00f742] + GeometryTypes v0.7.7
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.6
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[5ab0869b] + KernelDensity v0.5.1
[d3d80556] + LineSearches v7.0.1
[c7f686f2] + MCMCChains v1.0.0
[856f044c] + MKL_jll v2019.0.117+0
[442fdcdd] + Measures v0.3.1
[0987c9cc] + MonteCarloMeasurements v0.5.8
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.3
[86f7a689] + NamedArrays v0.9.3
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.2.3
[6fe1bfb0] + OffsetArrays v0.11.4
[4536629a] + OpenBLAS_jll v0.3.7+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[429524aa] + Optim v0.19.7
[90014a1f] + PDMats v0.9.10
[d96e819e] + Parameters v0.12.0
[ccf2f8ad] + PlotThemes v1.0.1
[995b91a9] + PlotUtils v0.6.2
[91a5bcdd] + Plots v0.27.1
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[b3c3ace0] + RangeArrays v0.3.2
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[79098fc4] + Rmath v0.6.0
[992d4aef] + Showoff v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[4c63d2b9] + StatsFuns v0.9.3
[f3b207a7] + StatsPlots v0.12.0
[bd369af6] + Tables v0.2.11
[ea10d353] + WeakRefStrings v0.6.2
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.5.0
[9fa8497b] + Future
[4607b0f0] + SuiteSparse
Building FFTW ──→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Updating `/tmp/jl_q320q2/Project.toml`
[no changes]
Updating `/tmp/jl_q320q2/Manifest.toml`
[no changes]
Building GR ────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Updating `/tmp/jl_jAy5rS/Project.toml`
[no changes]
Updating `/tmp/jl_jAy5rS/Manifest.toml`
[no changes]
Building FFMPEG → `~/.julia/packages/FFMPEG/guN1x/deps/build.log`
Updating `/tmp/jl_UgYFvQ/Project.toml`
[no changes]
Updating `/tmp/jl_UgYFvQ/Manifest.toml`
[no changes]
Building Plots ─→ `~/.julia/packages/Plots/WwFyB/deps/build.log`
Updating `/tmp/jl_Rqt7vQ/Project.toml`
[no changes]
Updating `/tmp/jl_Rqt7vQ/Manifest.toml`
[no changes]
Building Rmath ─→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_ogjMVR/Project.toml`
[no changes]
Updating `/tmp/jl_ogjMVR/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_TOSMy2/Project.toml`
[131c737c] ArviZ v0.2.4
[593b3428] CmdStan v5.5.0
[c7f686f2] MCMCChains v1.0.0
[0987c9cc] MonteCarloMeasurements v0.5.8
[d9ec5142] NamedTupleTools v0.12.1
[eadc2687] Pandas v1.3.0
[438e738f] PyCall v1.91.2
[d330b81b] PyPlot v2.8.2
[ae029012] Requires v0.5.2
[2913bbd2] StatsBase v0.32.0
[d6f4376e] Markdown
[3fa0cd96] REPL
[9a3f8284] Random
[8dfed614] Test
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package pandas could not be found by pyimport. Usually this means
that you did not install pandas in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the pandas module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the pandas module, you can use `pyimport_conda("pandas", PKG)`,
where PKG is the Anaconda package the contains the module pandas,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'pandas'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /home/pkgeval/.julia/packages/Pandas/wBpaf/src/Pandas.jl:26
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[6] _require_from_serialized(::String) at ./loading.jl:748
[7] _require(::Base.PkgId) at ./loading.jl:1039
[8] require(::Base.PkgId) at ./loading.jl:927
[9] require(::Module, ::Symbol) at ./loading.jl:922
[10] include(::Module, ::String) at ./Base.jl:377
[11] top-level scope at none:2
[12] eval at ./boot.jl:331 [inlined]
[13] eval(::Expr) at ./client.jl:449
[14] top-level scope at ./none:3
during initialization of module Pandas
in expression starting at /home/pkgeval/.julia/packages/ArviZ/CVDNZ/src/ArviZ.jl:9
ERROR: LoadError: Failed to precompile ArviZ [131c737c-5715-5e2e-ad31-c244f01c1dc7] to /home/pkgeval/.julia/compiled/v1.5/ArviZ/WF7nZ_EosuC.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::String) at ./client.jl:439
[7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/ArviZ/CVDNZ/test/runtests.jl:1
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/ArviZ/CVDNZ/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/ArviZ/CVDNZ/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package ArviZ errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13