From 6f535fa2203a8e8f023e3c5c82ce07c341b41bed Mon Sep 17 00:00:00 2001 From: Dilum Aluthge Date: Thu, 7 Oct 2021 23:21:04 -0400 Subject: [PATCH 1/2] [OpenBLAS/lapack] Fix the `LinearAlgebra/tridiag` segfaults by adding the relevant patch and bumping the OpenBLAS JLLs --- deps/openblas.mk | 7 +- ...as-julia42415-lapack625-openblas3392.patch | 95 +++++++++++++++++++ 2 files changed, 101 insertions(+), 1 deletion(-) create mode 100644 deps/patches/openblas-julia42415-lapack625-openblas3392.patch diff --git a/deps/openblas.mk b/deps/openblas.mk index 323d44792eebd..9e39adffe35b3 100644 --- a/deps/openblas.mk +++ b/deps/openblas.mk @@ -103,7 +103,12 @@ $(BUILDDIR)/$(OPENBLAS_SRC_DIR)/openblas-ofast-power.patch-applied: $(BUILDDIR)/ patch -p1 -f < $(SRCDIR)/patches/openblas-ofast-power.patch echo 1 > $@ -$(BUILDDIR)/$(OPENBLAS_SRC_DIR)/neoverse-generic-kernels.patch-applied: $(BUILDDIR)/$(OPENBLAS_SRC_DIR)/openblas-ofast-power.patch-applied +$(BUILDDIR)/$(OPENBLAS_SRC_DIR)/openblas-julia42415-lapack625-openblas3392.patch-applied: $(BUILDDIR)/$(OPENBLAS_SRC_DIR)/openblas-ofast-power.patch-applied + cd $(BUILDDIR)/$(OPENBLAS_SRC_DIR) && \ + patch -p1 -f < $(SRCDIR)/patches/openblas-julia42415-lapack625-openblas3392.patch + echo 1 > $@ + +$(BUILDDIR)/$(OPENBLAS_SRC_DIR)/neoverse-generic-kernels.patch-applied: $(BUILDDIR)/$(OPENBLAS_SRC_DIR)/openblas-julia42415-lapack625-openblas3392.patch-applied cd $(BUILDDIR)/$(OPENBLAS_SRC_DIR) && \ patch -p1 -f < $(SRCDIR)/patches/neoverse-generic-kernels.patch echo 1 > $@ diff --git a/deps/patches/openblas-julia42415-lapack625-openblas3392.patch b/deps/patches/openblas-julia42415-lapack625-openblas3392.patch new file mode 100644 index 0000000000000..e7b874b961cca --- /dev/null +++ b/deps/patches/openblas-julia42415-lapack625-openblas3392.patch @@ -0,0 +1,95 @@ +From 2be5ee3cca97a597f2ee2118808a2d5eacea050c Mon Sep 17 00:00:00 2001 +From: Martin Kroeker +Date: Fri, 1 Oct 2021 11:17:21 +0200 +Subject: [PATCH 1/4] Fix out of bounds read in ?llarv (Reference-LAPACK PR + 625) + +--- + lapack-netlib/SRC/clarrv.f | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/lapack-netlib/SRC/clarrv.f b/lapack-netlib/SRC/clarrv.f +index a45f55ac3b..26a9febc87 100644 +--- a/lapack-netlib/SRC/clarrv.f ++++ b/lapack-netlib/SRC/clarrv.f +@@ -351,7 +351,7 @@ SUBROUTINE CLARRV( N, VL, VU, D, L, PIVMIN, + * + * Quick return if possible + * +- IF( N.LE.0 ) THEN ++ IF( (N.LE.0) .OR. (M.LE.0) ) THEN + RETURN + END IF + * + +From fe497efa0510466fd93578aaf9da1ad8ed4edbe7 Mon Sep 17 00:00:00 2001 +From: Martin Kroeker +Date: Fri, 1 Oct 2021 11:18:20 +0200 +Subject: [PATCH 2/4] Fix out of bounds read in ?llarv (Reference-LAPACK PR + 625) + +--- + lapack-netlib/SRC/dlarrv.f | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/lapack-netlib/SRC/dlarrv.f b/lapack-netlib/SRC/dlarrv.f +index 4a59a2bbf9..a1c6e9c9d7 100644 +--- a/lapack-netlib/SRC/dlarrv.f ++++ b/lapack-netlib/SRC/dlarrv.f +@@ -353,7 +353,7 @@ SUBROUTINE DLARRV( N, VL, VU, D, L, PIVMIN, + * + * Quick return if possible + * +- IF( N.LE.0 ) THEN ++ IF( (N.LE.0).OR.(M.LE.0) ) THEN + RETURN + END IF + * + +From ddb0ff5353637bb5f5ad060c9620e334c143e3d7 Mon Sep 17 00:00:00 2001 +From: Martin Kroeker +Date: Fri, 1 Oct 2021 11:19:07 +0200 +Subject: [PATCH 3/4] Fix out of bounds read in ?llarv (Reference-LAPACK PR + 625) + +--- + lapack-netlib/SRC/slarrv.f | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/lapack-netlib/SRC/slarrv.f b/lapack-netlib/SRC/slarrv.f +index 04519fde8c..9448b2fd92 100644 +--- a/lapack-netlib/SRC/slarrv.f ++++ b/lapack-netlib/SRC/slarrv.f +@@ -353,7 +353,7 @@ SUBROUTINE SLARRV( N, VL, VU, D, L, PIVMIN, + * + * Quick return if possible + * +- IF( N.LE.0 ) THEN ++ IF( (N.LE.0).OR.(M.LE.0) ) THEN + RETURN + END IF + * + +From 337b65133df174796794871b3988cd03426e6d41 Mon Sep 17 00:00:00 2001 +From: Martin Kroeker +Date: Fri, 1 Oct 2021 11:19:53 +0200 +Subject: [PATCH 4/4] Fix out of bounds read in ?llarv (Reference-LAPACK PR + 625) + +--- + lapack-netlib/SRC/zlarrv.f | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/lapack-netlib/SRC/zlarrv.f b/lapack-netlib/SRC/zlarrv.f +index 23976dbefe..8d10e3c2e3 100644 +--- a/lapack-netlib/SRC/zlarrv.f ++++ b/lapack-netlib/SRC/zlarrv.f +@@ -351,7 +351,7 @@ SUBROUTINE ZLARRV( N, VL, VU, D, L, PIVMIN, + * + * Quick return if possible + * +- IF( N.LE.0 ) THEN ++ IF( (N.LE.0).OR.(M.LE.0) ) THEN + RETURN + END IF + * From 77172e99d18bfe58fe2f38f27a52832a4fd72e66 Mon Sep 17 00:00:00 2001 From: Valentin Churavy Date: Fri, 8 Oct 2021 20:47:26 -0400 Subject: [PATCH 2/2] bump OpenBLAS_jll --- deps/checksums/openblas | 184 +++++++++++++++---------------- stdlib/OpenBLAS_jll/Project.toml | 2 +- 2 files changed, 93 insertions(+), 93 deletions(-) diff --git a/deps/checksums/openblas b/deps/checksums/openblas index 597c5d5aa5868..2aa30aedb3c67 100644 --- a/deps/checksums/openblas +++ b/deps/checksums/openblas @@ -1,94 +1,94 @@ -OpenBLAS.v0.3.17+0.aarch64-apple-darwin-libgfortran5.tar.gz/md5/6d1adab725ba1f1e63a773610120c415 -OpenBLAS.v0.3.17+0.aarch64-apple-darwin-libgfortran5.tar.gz/sha512/004b7b9babaeded60e2d4d24bc07f6c5edf04ee6564cf9b2ee5f39e72859a2100df637631d79cbb4be26b740141d15c9794c443d2798850dbf1cdaa47c1ee1ed -OpenBLAS.v0.3.17+0.aarch64-linux-gnu-libgfortran3.tar.gz/md5/d18088e102948fe95b13ef8a0b1420fc -OpenBLAS.v0.3.17+0.aarch64-linux-gnu-libgfortran3.tar.gz/sha512/855860b44af6c9c9b40f3e07e6c6db2b54714a211788bee377becd9da58f17bffe8118c6317326b47cad6a8525a2d55f355fde1d4f7ecf75731cd48032deae21 -OpenBLAS.v0.3.17+0.aarch64-linux-gnu-libgfortran4.tar.gz/md5/730771a8901aa54e412551f4c3c14fed -OpenBLAS.v0.3.17+0.aarch64-linux-gnu-libgfortran4.tar.gz/sha512/5beb259e1e7e3edb5b60dcbdc97683c265accaaea3c0e22e688d09cb82ded75413e7ed6ac75f1d87465191baa387f012b50a2ddf921732ff5642b5d0e379ff3d -OpenBLAS.v0.3.17+0.aarch64-linux-gnu-libgfortran5.tar.gz/md5/b7d37884a729c0cad1f90407e6357649 -OpenBLAS.v0.3.17+0.aarch64-linux-gnu-libgfortran5.tar.gz/sha512/befc096f478947c4361ffe29256ab8f65f0d8d07a0932caa16ee43339422a8af9b79ce9a7bc2268ecc0edde57a874fe086dfd08a758d310572c95a2baff24d22 -OpenBLAS.v0.3.17+0.aarch64-linux-musl-libgfortran3.tar.gz/md5/f9fa013c02ed7dd0b8cee2c3dce69807 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-OpenBLAS.v0.3.17+0.armv6l-linux-gnueabihf-libgfortran3.tar.gz/sha512/50f9053ba121c9c593fe08114562ba0d11a1c8bc46eecb376dbab06c57741d046de281ebc9499d5a87a7682782d3429730d262d7ae05d2c54ac7bb71635a4aa2 -OpenBLAS.v0.3.17+0.armv6l-linux-gnueabihf-libgfortran4.tar.gz/md5/0c57cf0f5e6b097e7c7b5162e3d3fa93 -OpenBLAS.v0.3.17+0.armv6l-linux-gnueabihf-libgfortran4.tar.gz/sha512/ee1b0842276366f2e5e6d5a600fd9e3aa6915f3c96db0770be7fd9fbf9b9fab7f709a8087abf9f7ae1f291178730fcd5791c928255e8ad8d9b818b62a366f95d -OpenBLAS.v0.3.17+0.armv6l-linux-gnueabihf-libgfortran5.tar.gz/md5/6514e09f96619e183bcecf196ee03356 -OpenBLAS.v0.3.17+0.armv6l-linux-gnueabihf-libgfortran5.tar.gz/sha512/b2e091f720009e970f62f53846b840a6e1106ce17db709bc940308f1c4f0bae02ef312aab3511e62147f1ecd6121a3ce8263d94931acb53122442f78e1859160 -OpenBLAS.v0.3.17+0.armv6l-linux-musleabihf-libgfortran3.tar.gz/md5/7e61f954bd743ac2c36cc18d0e956b80 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-OpenBLAS.v0.3.17+0.armv7l-linux-musleabihf-libgfortran3.tar.gz/sha512/ac57336720b6b79512d08423de65803c8b2d854a67adf5e3766628d1d67b7fc153cb6cdd463b3d801b6cef6bd38a2174a861c25825073a6c221b96ddfc7914e3 -OpenBLAS.v0.3.17+0.armv7l-linux-musleabihf-libgfortran4.tar.gz/md5/93d929aac8e7e3851be1d23f7d589b0d -OpenBLAS.v0.3.17+0.armv7l-linux-musleabihf-libgfortran4.tar.gz/sha512/5be22d3aa0b5e2a2d6fed79e2669c89630b236c506d1c6ed55dfa1158903c298b827583a326a413f1ea5ae336de6d3d508b76f72e3e1e0729643b86543192f7b -OpenBLAS.v0.3.17+0.armv7l-linux-musleabihf-libgfortran5.tar.gz/md5/f5efd57ea0e7acf8c47e7759759f8294 -OpenBLAS.v0.3.17+0.armv7l-linux-musleabihf-libgfortran5.tar.gz/sha512/1d51b3521c184a39bd5471ba8b0fced85c51d9d69580e18468b26d77a94d050e8cb9e2cac0ca57a598cd90e428b75b2002497101bb7c148a28c9f1998dc09ce8 -OpenBLAS.v0.3.17+0.i686-linux-gnu-libgfortran3.tar.gz/md5/c6b1957bbda6aec3941a54614aef5c8f 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-OpenBLAS.v0.3.17+0.i686-w64-mingw32-libgfortran3.tar.gz/sha512/070303eded91ef484140068f1291dbebac763e1336fdb860affe4246c16e156751a7e05e51591f3e39d1a4331d84a53a009f45b49be56e6372ec81a7630c8d39 -OpenBLAS.v0.3.17+0.i686-w64-mingw32-libgfortran4.tar.gz/md5/e1e5bd791931b93f4b9da96619796479 -OpenBLAS.v0.3.17+0.i686-w64-mingw32-libgfortran4.tar.gz/sha512/09cb091c7a065697d72320da18fb29a8fa9c49d97047a03f1a881add304d5613829083a472ea082cc3779ada82f138eaaffae9fd5233a47ac77777460465e058 -OpenBLAS.v0.3.17+0.i686-w64-mingw32-libgfortran5.tar.gz/md5/f78f0e4c205ead8826d93b35268ef579 -OpenBLAS.v0.3.17+0.i686-w64-mingw32-libgfortran5.tar.gz/sha512/cb5eb6c2d037d46cbcf7540114a03a1a41a97682460fce7156bfa576bc3c75dfc16d4c8b6974ec677b429fd5063932e9f9611f8c7064ed585764999c11fb1b02 -OpenBLAS.v0.3.17+0.powerpc64le-linux-gnu-libgfortran3.tar.gz/md5/82368cc4d60d37483f40d447bf850af0 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+OpenBLAS.v0.3.17+1.x86_64-w64-mingw32-libgfortran5.tar.gz/sha512/642c168c3129ace4988eb5cc7f08f4821e1d7329c4c430765ebf0f8d89a24526a4516928bd6d477a0185836f63b54436caaaf1d0f4037b687649887f8e1ef74b openblas-d909f9f3d4fc4ccff36d69f178558df154ba1002.tar.gz/md5/4acd59865ca8b50c823bef1354148930 openblas-d909f9f3d4fc4ccff36d69f178558df154ba1002.tar.gz/sha512/227ee7decccf9bdd2e5754757f590e32ada95b576db9eddc2c74ef06d35aba1db9438acaf57750184baacac741917f7f5ad9f15991d31314480db371fe59cc17 diff --git a/stdlib/OpenBLAS_jll/Project.toml b/stdlib/OpenBLAS_jll/Project.toml index c7d59bb032897..ad8c546f37df8 100644 --- a/stdlib/OpenBLAS_jll/Project.toml +++ b/stdlib/OpenBLAS_jll/Project.toml @@ -1,6 +1,6 @@ name = "OpenBLAS_jll" uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.17+0" +version = "0.3.17+1" [deps] CompilerSupportLibraries_jll = "e66e0078-7015-5450-92f7-15fbd957f2ae"