[JLLs] Cap JLLs to HDF5_jll v1.12

[mkitti]

Here is the Julia code that I helped to do to set the caps. After this, I did some manual edits while reviewing the diff.

julia> function find_hdf5_jll(; query="HDF5_jll")
                  compat_dict = Dict{String, Dict{String,Bool}}()
                  for(root, dirs, files) in walkdir(".")
                      for file in files
                          if file == "Deps.toml" || file == "Compat.toml"
                              fullfile = joinpath(root,file)
                              lines = filter(contains(query), readlines(fullfile))
                              if !isempty(lines)
                                  printstyled(fullfile, ": "; color=:green)
                                  println.(lines)
                                  compat_dict[root] = get(compat_dict, root, Dict{String,Bool}())
                                  if file == "Deps.toml"
                                      deps_toml = TOML.parsefile(fullfile)
                                      for v in keys(deps_toml)
                                          compat_dict[root][v] = haskey(deps_toml[v], query)
                                      end
                                  elseif file == "Compat.toml"
                                      compat_toml = TOML.parsefile(fullfile)
                                      for v in keys(compat_toml)
                                          compat_dict[root][v] = haskey(compat_toml[v], query)
                                      end
                                  end
                              end
                          end
                      end
                  end
                  return compat_dict
              end

julia> function process_compat_toml(d, deps_dict)
                  fullfile = joinpath(d, "Compat.toml")
                  toml_dict = TOML.parsefile(fullfile)
                  for (k, v) in deps_dict
                      if v
                          if !haskey(toml_dict, k)
                              toml_dict[k] = Dict{String, Any}()
                          end
                          toml_dict[k]["HDF5_jll"] = "1.12"
                      end
                  end
                  toml_dict
              end

# Different from the OpenSSL code is that I set sorted = true for TOML.print
julia> function edit_compat_tomls(compat_dict; do_not_write = false)
                  for d in keys(compat_dict)
                      toml_dict = process_compat_toml(d, compat_dict[d])
                      if !do_not_write
                          open(joinpath(d, "Compat.toml"), "w") do io
                              TOML.print(io, toml_dict; sorted = true)
                          end
                      end
                      TOML.print(toml_dict; sorted = true)
                  end
              end

[mkitti]

Ping @giordano

[eschnett]

I believe that the version 1.12 is deemed compatible with 1.14, which we want to avoid. According to https://pkgdocs.julialang.org/v1/compatibility/, we need to use ~1.12 instead.

[mkitti]

I believe that the version 1.12 is deemed compatible with 1.14, which we want to avoid. According to https://pkgdocs.julialang.org/v1/compatibility/, we need to use ~1.12 instead.

The ranges here are explict. They have already been "lowered" from semver. A semver compat declaration of ~1.12 translates to a range of just 1.12.

julia> Pkg.Types.semver_spec("~1.12") |> print
1.12
julia> Pkg.Types.semver_spec("~1.12.0") |> print
1.12
julia> Pkg.Types.semver_spec("~1.12.1") |> print
1.12.1-1.12
julia> Pkg.Types.semver_spec("~1.12.2") |> print
1.12.2-1.12
julia> Pkg.Types.semver_spec("1.12") |> print
1.12.0-1

[giordano]

Yeah, the syntax of compat bounds we use in Package.toml is different from what's here in the registry.