diff --git a/benj/lee.py b/benj/lee.py index bf0c50d..956dabd 100644 --- a/benj/lee.py +++ b/benj/lee.py @@ -69,7 +69,7 @@ def lee( cov = np.zeros((adata.shape[1], adata.shape[1]), dtype=np.float32) zero_center |= scale inv_sd = np.zeros(adata.shape[1]) * np.nan - for ileft in tqdm(np.arange(0, len(all_indices), batch_size), desc="Computing covariance"): + for ileft in tqdm(np.arange(0, adata.shape[1], batch_size), desc="Computing covariance"): iright = min(ileft + batch_size, adata.shape[1]) X = adata.X[:, ileft:iright].copy() if issparse(X):