From a534a801a6962c61a2c9c4a25502b7bed6bf6dbf Mon Sep 17 00:00:00 2001 From: Mingfu Shao Date: Wed, 28 Jun 2017 11:18:13 -0400 Subject: [PATCH] update parameters in README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c6826bd..3789bdf 100644 --- a/README.md +++ b/README.md @@ -94,7 +94,7 @@ Parameters | Default Value | Description --min_transcript_coverage | 1.01 | the minimum coverage required to output a multi-exon transcript --min_single_exon_coverage | 20 | the minimum coverage required to output a single-exon transcript --min_exon_length | 50 | the minimum length of a transcript is: --min_transcript_length
+ --min_exon_length * num-of-exons - --min_transcript_length |250 | the minimum length of a transcript is: --min_transcript_length
+ --min_exon_length * num-of-exons + --min_transcript_length |150 | the minimum length of a transcript is: --min_transcript_length
+ --min_exon_length * num-of-exons --min_mapping_quality | 1 | ignore reads with mapping quality less than this value --min_bundle_gap |50 | the minimum distances required to start a new bundle --min_num_hits_in_bundle | 20 | the minimum number of reads required in a bundle