From 90b1e99bd7e7e1d608c137f8f23cba19d5e8bea5 Mon Sep 17 00:00:00 2001 From: EvanRees Date: Wed, 15 Apr 2020 12:08:52 -0500 Subject: [PATCH] bug found in logger message within func where args was being passed. --- autometa/common/coverage.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/autometa/common/coverage.py b/autometa/common/coverage.py index 5263c00db..e06592878 100644 --- a/autometa/common/coverage.py +++ b/autometa/common/coverage.py @@ -57,7 +57,7 @@ def from_spades_names(records): index=contig, name='coverage', dtype=float """ - logger.info(f'Retrieving coverages from contig ID in {args.assembly}') + logger.info(f'Retrieving coverages from contig ID in {len(records):,} records') coverages = pd.Series( {record.id:record.id.split('_cov_')[-1] for record in records}, name='coverage',