Plots and analysis for Zhou et al., Noncoding mutations target cis-regulatory elements of the FOXA1 plexus in prostate cancer, 2020.
Data used for these analyses can be found in data/
.
Analyses performed can be found in results/
.
For reproducibility, the core packages (and their versions) used for these analyses can be found in environment.yaml
.
To reproduce this environment, use Conda with the following command:
conda env create --name Zhou2020 --file environment.yaml
This repository can be downloaded using git clone
.
To re-run the analysis in a specific folder (i.e. results/<analysis>/
), simply run snakemake
from within this folder, or follow the README.md
files.