diff --git a/.zenodo.json b/.zenodo.json index 1ad0a15..0dfe61d 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -7,6 +7,11 @@ "name": "van Schayck, J. Paul", "affiliation": "Maastricht MultiModal Molecular Imaging Institute (M4I), FHML, Maastricht University, Maastricht, The Netherlands", "orcid": "https://orcid.org/0000-0001-6591-4637" + }, + { + "name": "Ravelli, Raimond B.G.", + "affiliation": "Maastricht MultiModal Molecular Imaging Institute (M4I), FHML, Maastricht University, Maastricht, The Netherlands", + "orcid": "https://orcid.org/0000-0001-6056-5888" } ], "related_identifiers": [ @@ -15,6 +20,12 @@ "identifier": "10.5281/zenodo.3635923", "relation": "isReferencedBy", "resource_type": "dataset" + }, + { + "scheme": "doi", + "identifier": "10.1016/j.ultramic.2020.113091", + "relation": "isDescribedBy", + "resource_type": "publication-article" } ] } \ No newline at end of file diff --git a/README.md b/README.md index f6a411b..5b7c690 100644 --- a/README.md +++ b/README.md @@ -1,11 +1,12 @@ [![DOI](https://zenodo.org/badge/112339162.svg)](https://zenodo.org/badge/latestdoi/112339162) # tpx3EventViewer -This software converts the sparse event stream (in HDF5) generated by tpx3HitParser to frames. -The green blocks are performed by [tpx3HitParser](https://github.com/M4I-nanoscopy/tpx3HitParser) while the blue blocks are done by tpx3EventViewer. +This software converts the sparse event stream (in HDF5) generated by [tpx3HitParser](https://github.com/M4I-nanoscopy/tpx3HitParser) to frames. ![Processing](processing.svg) +The green blocks are performed by [tpx3HitParser](https://github.com/M4I-nanoscopy/tpx3HitParser) while the blue blocks are done by tpx3EventViewer. + ## Getting ready @@ -98,4 +99,5 @@ MIT license ## Authors -Paul van Schayck (p.vanschayck@maastrichtuniversity.nl) \ No newline at end of file +* Paul van Schayck (p.vanschayck@maastrichtuniversity.nl) +* Raimond Ravelli (rbg.ravelli@maastrichtuniversity.nl) (corresponding) \ No newline at end of file diff --git a/processing.svg b/processing.svg index 369be31..370fe1c 100644 --- a/processing.svg +++ b/processing.svg @@ -2,9 +2,9 @@ ProcessingStepCorrectionRawstreamHitsClustersEventsFractionsConvertClusteringEvent localisationFill image matrixProcessingStepCorrectionSort Rawstreamin timeHitsCNN-ToTMoviestackClustersGainEventsDeterministicFractionsConvertBlurClusteringEvent localisationFill image matrixFilterSort clustersin timeCNN-ToTToT MoviestackGainDeterministicBlurFilterclusterscalibrationToAToT calibrationphaseToAphaseChipedgeChipedgeStacking + id="tspan21174" + x="99.204399" + y="13.854668">Stacking diff --git a/requirements.txt b/requirements.txt index 7775896..e59a892 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,6 +1,6 @@ -h5py>=2.8.0,<3.2.0 +h5py>=2.8.0,<3.0.0 matplotlib>=3.0.0,<4.0.0 Pillow>9.0.0,<10.0.0 scipy>1.4.0,<2.0.0 -numpy>=1.16.0,<1.23.0 +numpy>=1.20.0,<1.23.0 mrcfile>1.0.0,<2.0.0 \ No newline at end of file