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mimic3wdb-matched RECORDS file hast too many entries #1658

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tecamenz opened this issue Oct 13, 2023 · 0 comments
Open

mimic3wdb-matched RECORDS file hast too many entries #1658

tecamenz opened this issue Oct 13, 2023 · 0 comments

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@tecamenz
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Prerequisites

Description

Description of the issue, including:

  • what you have tried
    Tried downloading mimic3wdb-matched using wfdb-python:
  • references to similar issues
    mimic3wdb-matched RECORDS file hast too many entries wfdb-python#466
  • queries demonstrating your question (if applicable)
    wfdb.io.dl_database("mimic3wdb-matched", "mimic3wdb-matched", records='all', annotators='all', keep_subdirs=True, overwrite=False)

We are trying to download the mimic3wdb-matched database via wfdb.io.dl_database:

wfdb.io.dl_database("mimic3wdb-matched", "mimic3wdb-matched", records='all', annotators='all', keep_subdirs=True, overwrite=False)

After a long wait, we get an error indicating a missing file:
wfdb.io._url.NetFileNotFoundError: 404 Error: Not Found for url: https://physionet.org/files/mimic3wdb-matched/1.0/p01/p017488/3783537_10000.hea

While investigating we found that the corresponding RECORDS file contains more records than there are in the database:
https://physionet.org/files/mimic3wdb-matched/1.0/p01/p017488/RECORDS

RECORDS file:
image

Actual content:
image

Can someone adapt the RECORDS file to reflect the database content

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