diff --git a/alphabase/constants/const_files/psm_reader.yaml b/alphabase/constants/const_files/psm_reader.yaml index 4ddb8020..d2577b93 100644 --- a/alphabase/constants/const_files/psm_reader.yaml +++ b/alphabase/constants/const_files/psm_reader.yaml @@ -102,6 +102,7 @@ pfind: 'decoy': ['Target/Decoy', 'Targe/Decoy'] modification_mapping: '': '' + msfragger_pepxml: reader_type: msfragger_pepxml rt_unit: second @@ -151,6 +152,7 @@ diann: 'score': 'CScore' 'fdr': 'Q.Value' modification_mapping: 'maxquant' + spectronaut_report: reader_type: spectronaut_report rt_unit: minute @@ -158,6 +160,7 @@ spectronaut_report: column_mapping: 'raw_name': 'R.FileName' 'rt': ['EG.ApexRT','EG.MeanApexRT'] + 'mobility': ['FG.ApexIonMobility'] 'proteins': ['PG.ProteinNames','PG.ProteinGroups'] 'genes': 'PG.Genes' 'uniprot_ids': 'PG.UniProtIds'