NAMESPACE

# Generated by roxygen2: do not edit by hand

export(calc_Minkowski_distances)
export(evaluate_library)
export(gene_search)
export(get_DE_genes)
export(get_celltype_mapping)
export(get_coexpression_stat)
export(get_gene_correlation_scores)
export(get_gene_prediction_scores)
export(get_neighborhood_preservation_scores)
export(get_neighs_all_stat)
export(get_redundancy_stat)
export(get_umap_coordinates)
export(plot_coexpression)
export(plot_expression_heatmap)
export(plot_mapping_heatmap)
export(plot_redundancy_stat)
export(plot_umaps_w_counts)
export(raw_to_sce)
export(retain_informative_genes)
import(Matrix)
import(ggplot2)
import(ggpubr)
import(viridis)
import(wesanderson)
importFrom(BiocNeighbors,queryKNN)
importFrom(Rfast,dista)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,counts)
importFrom(SingleCellExperiment,logcounts)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SummarizedExperiment,assays)
importFrom(batchelor,cosineNorm)
importFrom(batchelor,fastMNN)
importFrom(batchelor,multiBatchNorm)
importFrom(batchelor,multiBatchPCA)
importFrom(batchelor,reducedMNN)
importFrom(gdata,startsWith)
importFrom(ggcorrplot,ggcorrplot)
importFrom(irlba,prcomp_irlba)
importFrom(paleotree,reverseList)
importFrom(scran,computeSumFactors)
importFrom(scran,findMarkers)
importFrom(scran,getTopHVGs)
importFrom(scran,modelGeneVar)
importFrom(scran,quickCluster)
importFrom(scuttle,logNormCounts)
importFrom(scuttle,readSparseCounts)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(tibble,rownames_to_column)
importFrom(uwot,umap)