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sync latest changes into my fork #1

Merged
merged 111 commits into from
Dec 10, 2018
Merged

sync latest changes into my fork #1

merged 111 commits into from
Dec 10, 2018

Commits on Nov 18, 2018

  1. New job "exit-script" for EXIT, ERR, TERM. 

    Note "cylc kill" for bg jobs use SIGKILL, so the exit-script doesn't
run in that case.
    @hjoliver
    hjoliver committed Nov 18, 2018
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Commits on Nov 19, 2018

  1. Add tests for exit-script.

    @hjoliver
    hjoliver committed Nov 19, 2018
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  2. Remove cylc.flags.iflag 

    Remove a global state variable.
* Record same info using attr variables in scheduler and tasks.
* Update to task summary message always trigger a summary update.
    @matthewrmshin
    matthewrmshin committed Nov 19, 2018
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Commits on Nov 20, 2018

  1. Add new item to config test.

    @hjoliver
    hjoliver committed Nov 20, 2018
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  2. Address review feedback.

    @hjoliver
    hjoliver committed Nov 20, 2018
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Commits on Nov 21, 2018

  1. Merge pull request #2871 from matthewrmshin/remove-flags-iflag 

    Remove cylc.flags.iflag
    @hjoliver
    hjoliver authored Nov 21, 2018
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  2. Run exist-script on success only.

    @hjoliver
    hjoliver committed Nov 21, 2018
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  3. Document exit-script.

    @hjoliver
    hjoliver committed Nov 21, 2018
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  4. Merge pull request #2868 from hjoliver/exit-script 

    job exit script
    @kinow
    kinow authored Nov 21, 2018
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  5. auto stop-restart

    @oliver-sanders
    oliver-sanders committed Nov 21, 2018
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  6. move HostAppointer into its own module

    @oliver-sanders
    oliver-sanders committed Nov 21, 2018
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  7. auto stop-restart: don't stop suite unless there is a restart host

    @oliver-sanders
    oliver-sanders committed Nov 21, 2018
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  8. auto stop-restart: add force stop mode

    @oliver-sanders
    oliver-sanders committed Nov 21, 2018
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  9. auto stop-restart: handle jobs running on localhost

    @oliver-sanders
    oliver-sanders committed Nov 21, 2018
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  10. workaround: #2799 (comment)

    @oliver-sanders
    oliver-sanders committed Nov 21, 2018
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  11. auto stop-restart: allow force mode to override scheduled restart

    @oliver-sanders
    oliver-sanders committed Nov 21, 2018
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  12. update to #2781, #2849

    @oliver-sanders
    oliver-sanders committed Nov 21, 2018
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  13. auto stop-restart: feedback

    @oliver-sanders
    oliver-sanders committed Nov 21, 2018
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  14. modified images for documentation to match text

    @wxtim
    wxtim committed Nov 21, 2018
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  15. Merge pull request #2874 from wxtim/C2747_documentation_fix 

    modified images for documentation to match text
    @hjoliver
    hjoliver authored Nov 21, 2018
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Commits on Nov 22, 2018

  1. prevent more than 100 job submissions at once 

    fixed the sorting of itasks so that it still works

added a debug message for testing

added a working test for debug output

added a test

made the chunks roughly even sizes and smaller than 100.

squashlater:removed lines adding two lists that can be added in situ where they are used

squashlater:move the debug msg outside for batch in batches loop
    @wxtim
    wxtim committed Nov 22, 2018
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  2. host-appointer: prohibit invalid host names

    @oliver-sanders
    oliver-sanders committed Nov 22, 2018
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  3. PBS multi-cluster support.

    @hjoliver
    hjoliver committed Nov 22, 2018
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  4. Merge pull request #2809 from oliver-sanders/jump-ship 

    Auto stop-restart
    @hjoliver
    hjoliver authored Nov 22, 2018
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  5. Add unit tests for the parsec.__init__

    Bruno P. Kinoshita committed Nov 22, 2018
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  6. Add unit tests for parsec.empysupport

    Bruno P. Kinoshita committed Nov 22, 2018
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  7. Add unit tests for parsec.util

    Bruno P. Kinoshita committed Nov 22, 2018
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  8. Add unit tests for parsec.config

    Bruno P. Kinoshita committed Nov 22, 2018
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  9. Add unit tests for parsec.jinja2support

    Bruno P. Kinoshita committed Nov 22, 2018
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  10. Add unit tests for parsec.OrderedDict

    Bruno P. Kinoshita committed Nov 22, 2018
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  11. Add coverage to the project reports. 

    Travis-CI configuration was updated to use build stages.
The build matrix was moved to the test stage, and extra
configuration for coverage.py and codacy were added.
    @kinow
    kinow authored and Bruno P. Kinoshita committed Nov 22, 2018
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  12. Move unit tests to under a tests folder/package

    @kinow
    kinow authored and Bruno P. Kinoshita committed Nov 22, 2018
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  13. Replace failUnless by assertTrue (remove deprecation warning from logs)

    Bruno P. Kinoshita committed Nov 22, 2018
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  14. Combine coverage reports

    Bruno P. Kinoshita committed Nov 22, 2018
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  15. Execute unit tests (cheaper) before functional tests (expensive)

    Bruno P. Kinoshita committed Nov 22, 2018
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  16. restore python 2 compatability

    @oliver-sanders
    oliver-sanders authored and Bruno P. Kinoshita committed Nov 22, 2018
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  17. move doctests into cylc.tests

    @oliver-sanders
    oliver-sanders authored and Bruno P. Kinoshita committed Nov 22, 2018
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  18. Move unit tests under one single env

    Bruno P. Kinoshita committed Nov 22, 2018
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  19. Ignore parsec tests in sources

    @kinow
    kinow authored and Bruno P. Kinoshita committed Nov 22, 2018
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  20. Append when combining coverage

    @kinow
    kinow authored and Bruno P. Kinoshita committed Nov 22, 2018
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  21. Fix pycodestyle issues

    Bruno P. Kinoshita committed Nov 22, 2018
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  22. Ignore files related to profiling, gui, and deprecated in py3

    Bruno P. Kinoshita committed Nov 22, 2018
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  23. Include pytest.ini, and execute all doctest tests with pytest

    Bruno P. Kinoshita committed Nov 22, 2018
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  24. Remove doctest initialization code (now in pytest)

    Bruno P. Kinoshita committed Nov 22, 2018
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  25. Move coverage arguments to Travis-CI only, and s/py.test/pytest

    Bruno P. Kinoshita committed Nov 22, 2018
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  26. Add docstrings.

    @hjoliver
    hjoliver committed Nov 22, 2018
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Commits on Nov 23, 2018

  1. Rename test_scheduler.py to test_host_appointer_py, and move tests ou… 

    …t of host_appointer.py
    Bruno P. Kinoshita committed Nov 23, 2018
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  2. Fix host name split.

    @hjoliver
    hjoliver committed Nov 23, 2018
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  3. PBS multi-cluster unit tests.

    @hjoliver
    hjoliver committed Nov 23, 2018
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  4. pep8 tweak

    @hjoliver
    hjoliver committed Nov 23, 2018
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  5. Remove unit tests executed withing the test-battery command

    @kinow
    kinow committed Nov 23, 2018
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  6. Remove parsec doctest (now in pytest)

    @kinow
    kinow committed Nov 23, 2018
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  7. Replace deprecated failUnless by assertTrue in host_appointer tests

    @kinow
    kinow committed Nov 23, 2018
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  8. Add unit tests for parsec.validate

    @kinow
    Bruno P. Kinoshita authored and kinow committed Nov 23, 2018
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  9. Merge old tests for coerce functions of parsec.validate

    @kinow
    Bruno P. Kinoshita authored and kinow committed Nov 23, 2018
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  10. Add cases to cover remaining code in parsec.validate

    @kinow
    Bruno P. Kinoshita authored and kinow committed Nov 23, 2018
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  11. Remove test that was moved to a unittest class

    @kinow
    Bruno P. Kinoshita authored and kinow committed Nov 23, 2018
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  12. Add unit tests for parsec.upgrade

    @kinow
    Bruno P. Kinoshita authored and kinow committed Nov 23, 2018
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  13. Add unit tests for parsec.include

    @kinow
    Bruno P. Kinoshita authored and kinow committed Nov 23, 2018
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  14. Add unit tests for parsec.fileparse

    @kinow
    Bruno P. Kinoshita authored and kinow committed Nov 23, 2018
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  15. Merge pull request #2839 from kinow/increase-coverage-parsec 

    Increase coverage for the parsec package
    @matthewrmshin
    matthewrmshin authored Nov 23, 2018
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  16. Merge pull request #2766 from kinow/report-test-coverage 

    Add coverage to the project reports.
    @matthewrmshin
    matthewrmshin authored Nov 23, 2018
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  17. pytest.ini: add ignores 

    Ignore code based on optional dependencies: GTK, PyGraphviz and EmPy.
    @matthewrmshin
    matthewrmshin committed Nov 23, 2018
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  18. Tweak assertAlmostEqual() parsec coerce_<type> method tests

    @sadielbartholomew
    sadielbartholomew committed Nov 23, 2018
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Commits on Nov 24, 2018

  1. Merge pull request #2878 from matthewrmshin/add-pytest-ini-ignores 

    pytest.ini: add ignores
    @kinow
    kinow authored Nov 24, 2018
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  2. Merge pull request #2879 from sadielbartholomew/parsec-tests-python2.6 

    Replace unsuitable assertAlmostEqual() test use
    @matthewrmshin
    matthewrmshin authored Nov 24, 2018
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  3. Tidy qstat processing.

    @hjoliver
    hjoliver committed Nov 24, 2018
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  4. Merge pull request #2870 from wxtim/T002B_600_tasks_cause_problems 

    Batching job-submit tasks to avoid blocking Stdout/err pipes
    @hjoliver
    hjoliver authored Nov 24, 2018
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  5. GUI: use GTK theme colors.

    @hjoliver
    hjoliver committed Nov 24, 2018
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  6. Theme bg threshold.

    @hjoliver
    hjoliver committed Nov 24, 2018
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  7. With desktop theme bg and fg. 

    Works for gcylc graph view and "cylc graph".
    @hjoliver
    hjoliver committed Nov 24, 2018
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  8. Tweaks and tidies.

    @hjoliver
    hjoliver committed Nov 24, 2018
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  9. Fix graph tests.

    @hjoliver
    hjoliver committed Nov 24, 2018
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  10. Address a minor TODO.

    @hjoliver
    hjoliver committed Nov 24, 2018
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  11. Address feedback: default theme.

    @hjoliver
    hjoliver committed Nov 24, 2018
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  12. Use raw strings.

    @hjoliver
    hjoliver committed Nov 24, 2018
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  13. subprocpool: handle long STDOUT/ERR from commands 

    Ensure that pipes with lots of output do not block the command.
    @matthewrmshin
    matthewrmshin committed Nov 24, 2018
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  14. Add logic to skip select.poll proc pool test 

    If OS does not support `select.poll`.
    @matthewrmshin
    matthewrmshin committed Nov 24, 2018
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Commits on Nov 25, 2018

  1. Add unit tests for graphing module.

    @hjoliver
    hjoliver committed Nov 25, 2018
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  2. Add missing test file.

    @hjoliver
    hjoliver committed Nov 25, 2018
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  3. pep8

    @hjoliver
    hjoliver committed Nov 25, 2018
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  4. style, again

    @hjoliver
    hjoliver committed Nov 25, 2018
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  5. style again_2

    @hjoliver
    hjoliver committed Nov 25, 2018
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Commits on Nov 26, 2018

  1. Remove sourcemap from CSS

    Bruno P. Kinoshita committed Nov 26, 2018
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  2. Add space so that browser renders attributes correctly

    Bruno P. Kinoshita committed Nov 26, 2018
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  3. Remove extra body HTML tag

    Bruno P. Kinoshita committed Nov 26, 2018
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  4. Fix parsec example code

    Bruno P. Kinoshita committed Nov 26, 2018
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  5. Merge pull request #2876 from matthewrmshin/handle-long-subprocpool-o… 

    …utput

subprocpool: handle long STDOUT/ERR from commands
    @hjoliver
    hjoliver authored Nov 26, 2018
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  6. Merge pull request #2882 from kinow/fix-parsec-examples 

    Fix parsec example code
    @hjoliver
    hjoliver authored Nov 26, 2018
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  7. Merge pull request #2881 from kinow/trivial-fixes-cylc-review 

    Small fixes for cylc-review
    @matthewrmshin
    matthewrmshin authored Nov 26, 2018
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  8. Merge pull request #2842 from hjoliver/gui-gtk-theme 

    GUI: use GTK theme colors.
    @matthewrmshin
    matthewrmshin authored Nov 26, 2018
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  9. Merge pull request #2877 from hjoliver/pbs-tweak 

    PBS 13 "multi-cluster" support.
    @sadielbartholomew
    sadielbartholomew authored Nov 26, 2018
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  10. remote-init: fix bad unlink taking down the suite

    @matthewrmshin
    matthewrmshin committed Nov 26, 2018
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  11. Remove unused imports

    Bruno P. Kinoshita committed Nov 26, 2018
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  12. Merge pull request #2887 from matthewrmshin/fix-remote-init-tempfile-… 

    …unlink-oserror

remote-init: fix bad unlink taking down the suite
    @hjoliver
    hjoliver authored Nov 26, 2018
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Commits on Nov 27, 2018

  1. Merge pull request #2888 from kinow/remove-unused-imports 

    Remove a few unused imports
    @hjoliver
    hjoliver authored Nov 27, 2018
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  2. Fix WSGI docs (s/rose/cylc)

    Bruno P. Kinoshita committed Nov 27, 2018
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  3. Merge pull request #2889 from kinow/fix-wsgi-doc 

    Fix WSGI docs (s/rose/cylc)
    @hjoliver
    hjoliver authored Nov 27, 2018
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  4. Update change log for 7.8 release. [skip ci]

    @hjoliver
    hjoliver committed Nov 27, 2018
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  5. Fix typos.

    @hjoliver
    hjoliver committed Nov 27, 2018
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  6. Address feedback.

    @hjoliver
    hjoliver committed Nov 27, 2018
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  7. Address feedback_2.

    @hjoliver
    hjoliver committed Nov 27, 2018
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  8. Fix Rose link.

    @hjoliver
    hjoliver committed Nov 27, 2018
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  9. socket.gethostbyname_ex: add bad host to err

    @matthewrmshin
    matthewrmshin committed Nov 27, 2018
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  10. Merge pull request #2890 from hjoliver/cylc-7.8-changes 

    Update change log for 7.8 release
    @hjoliver
    hjoliver authored Nov 27, 2018
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  11. min-expressions-with-spaces

    @oliver-sanders
    oliver-sanders committed Nov 27, 2018
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  12. Merge pull request #2892 from matthewrmshin/more-info-on-bad-host 

    cylc.hostuserutil: get_fqdn_by_host: include bad host name in error
    @hjoliver
    hjoliver authored Nov 27, 2018
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  13. Merge pull request #2893 from oliver-sanders/min-expressions-with-spaces 

    graphing: spaces in min expressions
    @hjoliver
    hjoliver authored Nov 27, 2018
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  14. Final change log update for 7.8.0.

    @hjoliver
    hjoliver committed Nov 27, 2018
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Commits on Dec 1, 2018

  1. Corrected a comment in the new variant PBS handler.

    @hjoliver
    hjoliver committed Dec 1, 2018
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Commits on Dec 3, 2018

  1. Merge pull request #2899 from hjoliver/fix-job-sys-comment 

    Corrected a comment in the new variant PBS handler.
    @matthewrmshin
    matthewrmshin authored Dec 3, 2018
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