diff --git a/.github/workflows/bioconda-install.yml b/.github/workflows/bioconda-install.yml new file mode 100644 index 0000000..7dc4b68 --- /dev/null +++ b/.github/workflows/bioconda-install.yml @@ -0,0 +1,29 @@ +name: Bioconda install + +on: + schedule: + - cron: '0 3 * * 1' + + +jobs: + install-linux: + runs-on: ubuntu-latest + strategy: + max-parallel: 5 + steps: + - uses: actions/checkout@v2 + - name: Set up Python + uses: actions/setup-python@v2 + with: + python-version: 3.9 + - name: Add conda to system path + run: | + # $CONDA is an environment variable pointing to the root of the miniconda directory + echo $CONDA/bin >> $GITHUB_PATH + - name: Install dependencies + run: | + conda install -c bioconda biophi + - name: Run tests + run: | + biophi sapiens -h + biophi oasis -h