From 085ed25bcd0e7441404c30cb96ac67f1b6bd890c Mon Sep 17 00:00:00 2001
From: GitHubbit <10294502+GitHubbit@users.noreply.github.com>
Date: Wed, 10 May 2023 11:11:25 -0400
Subject: [PATCH 1/3] Update smartapi.yaml

Updates for compatibility with TRAPI 1.4 edge sources specification
---
 multiomics_clinical_trials/smartapi.yaml | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/multiomics_clinical_trials/smartapi.yaml b/multiomics_clinical_trials/smartapi.yaml
index 97bff931..43669025 100644
--- a/multiomics_clinical_trials/smartapi.yaml
+++ b/multiomics_clinical_trials/smartapi.yaml
@@ -596,7 +596,8 @@ components:
         parameters:
           fields: >-
             object.UMLS,
-            association.edge_attributes
+            association.edge_attributes,
+            source.edge_sources
           size: 1000
         predicate: related_to
         response_mapping:
@@ -620,7 +621,8 @@ components:
         parameters:
           fields: >-
             subject.UMLS,
-            association.edge_attributes
+            association.edge_attributes,
+            source.edge_sources
           size: 1000
         predicate: related_to
         response_mapping:
@@ -632,6 +634,8 @@ components:
     treatment:
       UMLS: object.UMLS   ## no prefix
       edge-attributes: association.edge_attributes
+      trapi_sources: source.edge_sources
     disease:
       UMLS: subject.UMLS   ## no prefix
       edge-attributes: association.edge_attributes
+      trapi_sources: source.edge_sources

From 97dd9fb0c52dfa5737293e86462ea93669751485 Mon Sep 17 00:00:00 2001
From: GitHubbit <10294502+GitHubbit@users.noreply.github.com>
Date: Fri, 2 Jun 2023 14:21:05 -0400
Subject: [PATCH 2/3] Update smartapi.yaml

https://github.com/biothings/biothings_explorer/issues/617#issuecomment-1562026459

Did mandatory TRAPI 1.3 edits
---
 multiomics_clinical_trials/smartapi.yaml | 30 ++++++++++--------------
 1 file changed, 13 insertions(+), 17 deletions(-)

diff --git a/multiomics_clinical_trials/smartapi.yaml b/multiomics_clinical_trials/smartapi.yaml
index 87c593d2..cca88459 100644
--- a/multiomics_clinical_trials/smartapi.yaml
+++ b/multiomics_clinical_trials/smartapi.yaml
@@ -55,7 +55,7 @@ paths:
       - name: id
         in: path
         required: true
-        example: "00065273_C0025362_C0009079"
+        example: "00065273_C0009079_C0025362"
         schema:
           type: string
       - "$ref": "#/components/parameters/fields"
@@ -119,8 +119,8 @@ paths:
           application/json:
             example:
               ids:
-              - "00065273_C0025362_C0009079"
-              - "00065273_C0025362_C0171023"
+              - "00065273_C0009079_C0025362"
+              - "00065273_C0171023_C0025362"
             schema:
               type: object
               properties:
@@ -175,7 +175,7 @@ paths:
           API](https://docs.mychem.info/en/latest/doc/chem_query_service.html#query-syntax).
         in: query
         required: true
-        example: "subject.UMLS:C0006012"
+        example: "object.UMLS:C0006012"
         schema:
           type: string
       - "$ref": "#/components/parameters/fields"
@@ -276,7 +276,7 @@ paths:
               - "C0006012"
               - "C0524620"
               scopes:
-              - "subject.UMLS"
+              - "object.UMLS"
             schema:
               type: object
               properties:
@@ -589,15 +589,14 @@ components:
             ## API data has no prefix
             ## joinSafe is only needed if the delimiter isn't a comma
             q: "{{ queryInputs }}"
-            scopes: subject.UMLS
+            scopes: object.UMLS
         outputs:
           - id: UMLS
             semantic: Treatment
         parameters:
           fields: >-
-            object.UMLS,
-            association.edge_attributes,
-            source.edge_sources
+            subject.UMLS,
+            association.edge_attributes
           size: 1000
         predicate: related_to
         response_mapping:
@@ -614,15 +613,14 @@ components:
         requestBody:
           body:
             q: "{{ queryInputs }}"
-            scopes: object.UMLS
+            scopes: subject.UMLS
         outputs:
           - id: UMLS
             semantic: Disease
         parameters:
           fields: >-
-            subject.UMLS,
-            association.edge_attributes,
-            source.edge_sources
+            object.UMLS,
+            association.edge_attributes
           size: 1000
         predicate: related_to
         response_mapping:
@@ -632,10 +630,8 @@ components:
         #     oneOutput: "UMLS:C0334579"      ## anaplastic astrocytoma
   x-bte-response-mapping:
     treatment:
-      UMLS: object.UMLS   ## no prefix
+      UMLS: subject.UMLS   ## no prefix
       edge-attributes: association.edge_attributes
-      trapi_sources: source.edge_sources
     disease:
-      UMLS: subject.UMLS   ## no prefix
+      UMLS: object.UMLS   ## no prefix
       edge-attributes: association.edge_attributes
-      trapi_sources: source.edge_sources

From 92d12e359e702a5740dc84a923ae03b750727071 Mon Sep 17 00:00:00 2001
From: GitHubbit <10294502+GitHubbit@users.noreply.github.com>
Date: Wed, 14 Jun 2023 18:22:55 -0400
Subject: [PATCH 3/3] Changed YAML for TRAPI 1.3

---
 multiomics_clinical_trials/smartapi.yaml | 11 ++++++++---
 1 file changed, 8 insertions(+), 3 deletions(-)

diff --git a/multiomics_clinical_trials/smartapi.yaml b/multiomics_clinical_trials/smartapi.yaml
index cca88459..d0bb4669 100644
--- a/multiomics_clinical_trials/smartapi.yaml
+++ b/multiomics_clinical_trials/smartapi.yaml
@@ -29,12 +29,17 @@ servers:
   url: http://biothings.ncats.io/multiomics_clinicaltrials_kp
   x-maturity: production
 tags:
-- name: association
 - name: treatment
+- name: intervention
 - name: disease
-- name: query
+- name: condition
 - name: translator
 - name: biothings
+- name: multiomics
+- name: clinical
+- name: trials
+- name: clinical_trials
+- name: bte
 paths:
   "/association/{id}":
     get:
@@ -634,4 +639,4 @@ components:
       edge-attributes: association.edge_attributes
     disease:
       UMLS: object.UMLS   ## no prefix
-      edge-attributes: association.edge_attributes
+      edge-attributes: association.edge_attributes
\ No newline at end of file