Monarch Initiative
Homepage URL: https://monarchinitiative.org/
Description: The Monarch Initiative Knowledge Graph (KG) is a reference implementation of the Biolink model specification. The KG contains data from the Monarch Initiative aggregated database as well as several OBO ontologies. These data sources provide links between diseases, phenotypes, genomic features across human and non-human organisms. The KG is built using the knowledge graph exchange (KGX) framework, which transforms a variety of standard formats, such as RDF, OWL, and TRAPI JSON, to nodes and edges CSV files that are uploaded into Neo4J. The TRAPI API is built using PLATER, a tool that creates a TRAPI service given a Biolink compliant instance of Neo4J.
Example record:
Additional links:
- A tracker for issues can be found at https://github.com/monarchinitiative/monarch-ingest.
- A TRAPI endpoint is available at https://trapi.monarchinitiative.org/docs.
- KGX nodes and edges files can be downloaded from https://archive.monarchinitiative.org/202012/kgx/.
- The resource is registered in the Translator SmartAPI Registry at https://smart-api.info/registry/translator?q=1a41e3cd15f2b3bfa21c99900bfa1720.
- Translator Ontology Knowledge Graph: Back-end Ubergraph triplestore wrapped as the Ontology Service, documented here.
- For more information, contact the SRI team.