Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add fractional land capability to CMEPS #2

Closed
DeniseWorthen opened this issue Jun 29, 2020 · 0 comments
Closed

add fractional land capability to CMEPS #2

DeniseWorthen opened this issue Jun 29, 2020 · 0 comments

Comments

@DeniseWorthen
Copy link
Collaborator

Enable fractional land capability in CMEPS.
@DeniseWorthen DeniseWorthen mentioned this issue Jun 29, 2020
Merged
DeniseWorthen pushed a commit to DeniseWorthen/CMEPS that referenced this issue Sep 21, 2021
@mvertens
Merge pull request NOAA-EMC#2 from DeniseWorthen/feature/cmepsaccum
ffcdf1c 
fixes for ufs error in completeFieldInitialization
DeniseWorthen pushed a commit to DeniseWorthen/CMEPS that referenced this issue Nov 18, 2021
@fischer-ncar
Merge pull request NOAA-EMC#2 from ESCOMP/fischer/python_LICENSE
01deb90 
Add license file.
DeniseWorthen added a commit to DeniseWorthen/CMEPS that referenced this issue Jan 12, 2022
@DeniseWorthen
Squashed commit of the following:
e96fd52 
commit 84a17b750eaf52a0dbf42b1078c3e2feed5d6023
Author: Denise Worthen <denise.worthen@noaa.gov>
Date:   Mon Dec 27 16:35:00 2021 -0500

    tidy up, remove commented out code blocks

commit 5fb8561c9614e1df1c426d45cca7fcca7853e9fd
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Thu Dec 23 06:43:04 2021 -0700

    switch src/dst masks for wave

commit b873989ae5e037ac217aaa30077a3a1f677fcd34
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Tue Dec 21 16:57:30 2021 -0700

    change Sw_zo to Sw_z0 for hafs

commit cd2ae27d772a7adbc60fdc329b2a1f52168f3e72
Merge: 7a44b63 8b117b4
Author: Denise Worthen <denise.worthen@noaa.gov>
Date:   Thu Dec 16 09:08:43 2021 -0500

    Merge branch 'NOAA-EMC:emc/develop' into feature/wavcoupling

commit 7a44b63d586f7e38898d003b28a2e14a286a86ca
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Sun Nov 14 06:02:31 2021 -0700

    fix merge of stokes to ocn

commit 6b599262d1c22f95b6f87eca3279a1a11ab3bbc4
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Fri Nov 12 06:22:27 2021 -0700

    current tested changes for wave coupling

commit 8ec7328df766444299ee28a7b403a2818fdcbb0e
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Sat Oct 30 10:21:46 2021 -0600

    add unity norm for wave

    * this is running but not sure of right setting here

commit 8be8da038f2a71c38e9dbc211970e78f94182fba
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Sat Oct 30 09:39:39 2021 -0600

    add -> wav in post atm and post ocn

commit fff8fbc0ba7750981c1449267a9a347aa918ced1
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Fri Oct 29 12:34:25 2021 -0600

    change mapping for z0

commit 16364c255a203d77e9d58a510b7f5880c10dccf9
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Fri Oct 29 12:32:44 2021 -0600

    add more wav coupling fields

commit be3b1bb7eb9956c030caeb5cb27acb461eced6fd
Merge: f0fa04c 5beead0
Author: Denise Worthen <denise.worthen@noaa.gov>
Date:   Fri Oct 29 14:31:19 2021 -0400

    Merge branch 'NOAA-EMC:emc/develop' into feature/wavcoupling

commit f0fa04c382d65d92bd6826e89facb8093b75f6b0
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Wed Oct 27 07:48:14 2021 -0600

    add wave->atm field

    * sending only cpl_scalars back in export gave mediator error
    ESMF_GeomBaseGet Value unrecognized or out of range
    med_methods_mod.F90:424

commit 843a1f14f081b971a3aebcdbe07dcd31a9c9280d
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Wed Oct 20 19:20:00 2021 -0600

    add u10m,v10m from atm->wav

commit a0011cb4021b7b271145fa82f281c0b61da92add
Merge: aae1fe9 11884b6
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Fri Oct 15 14:08:05 2021 -0600

    Merge remote-tracking branch 'MV/feature/cism_bugfixes' into feature/updcmeps

commit 11884b680396101314cd223e54b6abd96c222241
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Oct 13 22:41:15 2021 -0600

    fix for issue #236

commit 95d0f10f5e1e6089c968cfd7cbe3424b7864eb1e
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Oct 13 19:48:22 2021 -0600

    fix for cmeps issue #235 and removal of null setting for local pointer variables (issue #234)

commit aae1fe93c71b9966c8be34889205816cfde1f4fc
Merge: c26a1b6 f1d514f
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Wed Oct 13 13:32:44 2021 -0400

    Merge remote-tracking branch 'escomp/master' into feature/updcmeps

commit f1d514f9ce456a6cbdbcfc26c0f1bf78ac255c01
Merge: f06fe9c ca2ecb3
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Wed Oct 13 11:09:58 2021 -0600

    Merge pull request #228 from mvertens/feature/history_refactor

    refactor mediator history to permit new functionality
    ### Description of changes
    refactor mediator history to permit new functionality

    ### Specific notes
    This PR is a large refactor of CMEPS history function capability. There are 3 categories where this capability is now extended or added: instantaneous, average and auxiliary output.
    - Each component post phase (i.e. `med_phases_post_xxx_mod.F90`) now calls `med_phases_history_write_comp` and passes it its component id.
    - In turn med_phases_write_comp calls instantaneous, average and auxiliary output for that component.

    - **med_phases_history_write_inst_comp**
        - writes the import and export state for that component based on the new input attribute settings
          `history_n_xxx_inst` and  `history_option_xxx_inst` - where xxx = [atm,ice,glc,lnd,ocn,rof,wav and med]
         - output files will have the form `<casename>.cpl.hi.atm.yyyy-mm-dd-sssss.nc`

    - **med_phases_history_write_avg_comp**
        - writes the import and export state for that component based on the new input attribute settings
          `history_n_xxx_avg` and  `history_option_xxx_avg` - where xxx = [atm,ice,glc,lnd,ocn,rof,wav]
         - output files will have the form `<casename>.cpl.ha.atm.yyyy-mm-dd-sssss.nc`

    - **med_phases_history_write_aux_comp**
        - writes auxiliary history files that are normally high frequency mediator output files that contain more than one time sample on a file and that are used to spin up a prognostic component (e.g. the ocn or lnd carbon cycle)
        -  the following auxiliary files are now supported and to enable them simply set the histaux_*_enabled flage to .true.
         ```histaux_atm2med_file1_enabled = .true.
         histaux_atm2med_file1_auxname = atm.1h.inst
         histaux_atm2med_file1_doavg = .false.
         histaux_atm2med_file1_flds = Faxa_swndr:Faxa_swvdr:Faxa_swndf:Faxa_swvdf
         histaux_atm2med_file1_history_n = 1
         histaux_atm2med_file1_history_option = nhours

         histaux_atm2med_file2_enabled = .false.
         histaux_atm2med_file1_ntperfile = 24
         histaux_atm2med_file2_auxname = atm.1h.avrg
         histaux_atm2med_file2_doavg = .true.
         histaux_atm2med_file2_flds = Sa_u:Sa_v
         histaux_atm2med_file2_history_n = 1
         histaux_atm2med_file2_history_option = nhours
         histaux_atm2med_file2_ntperfile = 24

         histaux_atm2med_file3_enabled = .false.
         histaux_atm2med_file3_auxname = atm.3hprec.avrg
         histaux_atm2med_file3_doavg = .true.
         histaux_atm2med_file3_flds = Faxa_rainc:Faxa_rainl:Faxa_snowc:Faxa_snowl
         histaux_atm2med_file3_history_n = 3
         histaux_atm2med_file3_history_option = nhours
         histaux_atm2med_file3_ntperfile = 8

         histaux_atm2med_file4_enabled = .false.
         histaux_atm2med_file4_auxname = atm.3h.avrg
         histaux_atm2med_file4_doavg = .true.
         histaux_atm2med_file4_flds = Sa_z:Sa_topo:Sa_u:Sa_v:Sa_tbot:Sa_ptem:Sa_shum:Sa_dens:Sa_pbot:Sa_pslv:Faxa_lwdn:Faxa_rainc:Faxa_rainl:Faxa_snowc:Faxa_snowl:Faxa_swndr:Faxa_swvdr:Faxa_swndf:Faxa_swvdf:Sa_co2diag:Sa_co2prog
         histaux_atm2med_file4_history_n = 3
         histaux_atm2med_file4_history_option = nhours
         histaux_atm2med_file4_ntperfile = 8

         histaux_atm2med_file5_auxname = atm.24h.avrg
         histaux_atm2med_file5_doavg = .true.
         histaux_atm2med_file5_enabled = .false.
         histaux_atm2med_file5_flds = Faxa_bcph:Faxa_ocph:Faxa_dstwet:Faxa_dstdry:Sa_co2prog:Sa_co2diag
         histaux_atm2med_file5_history_n = 1
         histaux_atm2med_file5_history_option = ndays
         histaux_atm2med_file5_ntperfile = 1

         histaux_lnd2med_file1_auxname = lnd.ncpl.inst
         histaux_lnd2med_file1_doavg = .false.
         histaux_lnd2med_file1_enabled = .false.
         histaux_lnd2med_file1_flds = all
         histaux_lnd2med_file1_history_n = 1
         histaux_lnd2med_file1_history_option = nsteps
         histaux_lnd2med_file1_ntperfile = 1
         ```
         - for file 1 history output is of the form <casename>.cpl.hx.atm.1h.inst.yyyy-mm-dd-sssss.nc - and the <atm.1h.inst>
            is specified by <histaux_atm2med_file1_auxname>
    Contributors other than yourself, if any: None
    CMEPS Issues Fixed: None
    Are changes expected to change answers?
     - [x] bit for bit
    Any User Interface Changes (namelist or namelist defaults changes)? (see above summary)
     - [x] Yes

commit ca2ecb3c14121581456112aaa7f36aa8dc6117f7
Merge: ef01040 f06fe9c
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Oct 13 10:55:05 2021 -0600

    updates to master

commit ef01040680dea74bd9bcfd1a0d1688e8b29ad6d5
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Oct 13 10:44:08 2021 -0600

    updates required in code review for PR

commit f06fe9cf12e4bd4b38bb6e469167ef2105e612d9
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Oct 7 08:25:13 2021 -0600

    add testmod for y100k

commit ca3a0adebb72fe7a6cc11ea7ee951bab4bfe634b
Merge: 0217cf3 082cbd9
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Wed Sep 29 17:35:03 2021 -0600

    Merge pull request #233 from jedwards4b/fix_mesh_check_input_data

    ### Description of changes
    check_input_data needs this flag to properly download mesh files.

    ### Specific notes
    Change was tested by running the aux_cmeps test suite with flag  --input-dir /glade/scratch/jedwards/inputdata/  to force a new download of inputdata.

    Contributors other than yourself, if any:

    CMEPS Issues : Fixes #196

    Are changes expected to change answers?
     - [X] bit for bit
     - [ ] different at roundoff level
     - [ ] more substantial

    Any User Interface Changes (namelist or namelist defaults changes)?
     - [ ] Yes
     - [X] No

    Testing performed if application target is CESM:(either UFS-S2S or CESM testing is required):
    - [ ] (recommended) CIME_DRIVER=nuopc scripts_regression_tests.py
       - machines:
       - details (e.g. failed tests):
    - [ ] (recommended) CESM testlist_drv.xml
       - machines and compilers:
       - details (e.g. failed tests):
    - [ ] (optional) CESM prealpha test
       - machines and compilers
       - details (e.g. failed tests):
    - [ ] (other) please described in detail
       - machines and compilers
       - details (e.g. failed tests):

    Testing performed if application target is UFS-coupled:
    - [ ] (recommended) UFS-coupled testing
       - description:
       - details (e.g. failed tests):

    Testing performed if application target is UFS-HAFS:
    - [ ] (recommended) UFS-HAFS testing
       - description:
       - details (e.g. failed tests):

    Hashes used for testing:
    - [ ] CESM:
      - repository to check out: https://github.com/ESCOMP/CESM.git
      - branch:
      - hash:
    - [ ] UFS-coupled, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:
    - [ ] UFS-HAFS, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:

commit 082cbd9b7f93e3f57a0bb40a22dc65719ccb95aa
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Wed Sep 29 13:57:14 2021 -0600

    add flag for check_input_data

commit 4ed6e9ce6317e05f0f42ca66e383fc959dde1db7
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Sep 27 11:17:59 2021 -0600

    refactored testlist

commit 3c5a7848911a8abaee42d99d6459567457429719
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Sep 26 22:49:11 2021 -0600

    made the F2000 test nuopc rather than mct

commit a2aecf42a229edef9c86033f434165cacd55d5d5
Merge: 21a1276 0217cf3
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Sep 26 22:23:22 2021 -0600

    updates to master

commit 21a1276f2efd7d6c50373047603429510c4fbffa
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Sep 26 11:56:15 2021 -0600

    added more debugging info

commit 313f0f3b62023e49aad6374f766c2a2d1bca4dcb
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Sep 25 14:47:00 2021 -0600

    refactored aux and avg history files and restart output

commit f5a319e67830f8d3313821da476a3498796ffc37
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Sep 24 19:30:36 2021 -0600

    refatored inst output mode

commit 0217cf372eaac61f5f209ffb889b93bee4759a60
Merge: 09659a9 b60e53c
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Fri Sep 24 14:42:06 2021 -0600

    Merge pull request #232 from mvertens/feature/restart_bugfix

    The lnd->rof accumulation fields are not being written to or read from the restarts with PR cmeps0.13.27 and this PR fixes that. This will only effect CESM configurations.
    This PR is bfb.

commit b60e53cb5ba87c6c5572d3f00fa60890486daeaf
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Sep 24 09:59:55 2021 -0600

    fixed compilation bug

commit 09659a93bf31a801126d923a758df3877b9d1720
Merge: c5cb7ba 6d27534
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Fri Sep 24 09:53:27 2021 -0600

    Merge pull request #230 from swensosc/master

    Pass tributary water depth and channel bankfull depth from rof to lnd
    This  is should be a bfb enhancement that only matters if the new field is actually used.

commit 6c05e2d3795daabb0b6ee25e1151c35ae52313df
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Sep 24 09:36:02 2021 -0600

    fixed restart problem for aux_cam and aux_clm tests

commit 6d77bc40f34ec3b49b7a953eed1a0eaa8398c685
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Thu Sep 23 23:17:53 2021 -0600

    fixed issues with alarms

commit c5cb7ba012043a7d9e47ee84e5a898f7e5506641
Merge: c240948 a28b585
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Sep 22 14:30:47 2021 -0600

    updated documentation from newdoc

commit efb9870f089c9a18d826c4995a348aa9b75e17c3
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Sep 22 14:27:35 2021 -0600

    fixed accumulation to rof from lnd restart issue

commit 320d751016c1168d9b9ef81c766c3501df9ad54f
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Sep 21 21:50:25 2021 -0600

    backed out changes to med_phases_post_gcl

commit c26a1b65a6d0d1934ecab0ddd72babdeb020e761
Merge: 233a89b c240948
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Tue Sep 21 14:44:34 2021 -0400

    Merge remote-tracking branch 'escomp/master' into feature/updcmeps

commit 6d27534fa9f195d933101bd31505f237c7da5e91
Author: Sean Swenson <swensosc@ucar.edu>
Date:   Mon Sep 20 14:30:54 2021 -0600

    add new rof to lnd field

commit 6c54e3e658a4caac0c13a580e1c291db6d91b0c9
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Sep 20 13:23:26 2021 -0600

    added fixes for multiple ice sheets

commit bc07453d89f2ea4a1d3a35fc0c3aa5d004c1da43
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Sep 20 12:31:12 2021 -0600

    updates to clean up med_phases_prep_glc

commit 594fd002fb04fb05e934db754d773d1d19f8f139
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Sep 19 20:05:01 2021 -0600

    updates to have l2x1yr aux file written

commit 76a5e4827872183ec81bd8cdc8208b125750040d
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Sep 15 15:09:38 2021 -0600

    fixes based on aux_glc testing

commit a8fa99910f78de29ac4d74b20246204a0332833f
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Sep 11 22:43:09 2021 -0600

    more cleanup and code sharing

commit f19485f8024f95eec75a1aedc5cc04d28cb804fc
Merge: 6956aeb c240948
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Sep 11 17:13:30 2021 -0600

    Merge branch 'master' into feature/history_refactor

commit c240948a3ffe2db5116fe5db7b10d1630640d9db
Merge: 8e95f7e 149dd16
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Sat Sep 11 17:11:49 2021 -0600

    Merge pull request #226 from mvertens/feature/refactor_accum

    refactor accum field bundles and cleanup of mediator phase InitializeIPDv03p4
    This PR does several things.
    1. The accumulated import field bundles are no longer arrays and have been removed from `med_internalstate_mod.F90`. All import accumulator field bundles are now module variables in  `med_phases_prep_rof_mod.F90` and `med_phases_prep_glc_mod.F90`. In both of these cases accumulation is done using the import field bundle on the import grid and the averaged, mapped and merged to the export field bundle.
    2. The accumulated export field bundles is no longer an array and only refers to ocean export accumulation. This field bundle now appears in the following section in `med_internalstate_mod.F90`.
    ```.F90
    ! Accumulators for export field bundles
        type(ESMF_FieldBundle) :: FBExpAccumOcn      ! Accumulator for various components export on their grid
        integer                :: ExpAccumOcnCnt = 0 ! Accumulator counter for each FBExpAccum
    ```
    3. The mediator subroutine `InitializeIPDv03p4` in `med.F90` serves to optionally modify the decomp/distr of transferred Grid/Mesh. In particular, the transfer of the grid was extremely difficult to follow. The cleanup in this PR makes it much clearer to see what is happening when a grid is transferred to the mediator and needs a new distgrid created for the mediator PEs.
    Are changes expected to change answers? No
    Any User Interface Changes (namelist or namelist defaults changes)? No

commit 149dd16158b8bbadc812f73948a13bd2a4147823
Merge: 1e0f22d 8e95f7e
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Sep 11 16:56:36 2021 -0600

    resolved conflict with master

commit 6956aeb1a086f411cce3bf8daf1a6effc42f2548
Merge: ff422ba eb6fe9b
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Sep 11 13:44:29 2021 -0600

    merged to head of feature/refactor_accum

commit 1e0f22d338d1e02277185e73c2013618f07c12b4
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Sep 11 13:27:33 2021 -0600

    updates for NUOPC_Realize call if mesh is transferred

commit eb6fe9b9977d64e0754e4b05900c2f93e08691d7
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Sep 9 15:27:48 2021 -0600

    add pylint required encoding to open

commit 877b1c86bbf50b0ad200a2bee0cf35ed3415f1ab
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Sep 9 15:09:50 2021 -0600

    only one shared modelio namelist per component

commit ff422ba56139a7fd0b177d339569a372d78fb1ba
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Sep 10 12:18:03 2021 -0600

    put in call to mediator history output in med_phases_aofluxes_mod.F90

commit 8e95f7e8022782e177ea4dea203ecdcf70e08bb6
Merge: b19355f 2595ee3
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Fri Sep 10 11:39:59 2021 -0600

    Merge pull request #227 from jedwards4b/share_modelio_namelist

commit 2595ee3a6bfc4e3694a848d77c77b5ea1f4d0810
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Sep 9 15:32:04 2021 -0600

    one more open statement

commit 7583d95b14d141c9faae362052af7e8c9da3a2f8
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Sep 9 15:27:48 2021 -0600

    add pylint required encoding to open

commit 903e4f995cc94b801a109036a9577b83e83dd969
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Sep 9 15:09:50 2021 -0600

    only one shared modelio namelist per component

commit 9cb2db402acf43326a1d2974af6a5a3a1c307e77
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Thu Sep 9 08:50:13 2021 -0600

    refactored history all write to use model clock

commit dd0a5af9ed4115a1491496d25d48866920f71b7c
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Sep 8 10:25:01 2021 -0600

    more code reuse introduced in med_phases_history_mod

commit 233a89b7cde0215e23e4d20db14dca5ff6df8a5b
Author: denise.worthen <denise.worthen@noaa.gov>
Date:   Tue Sep 7 17:46:36 2021 -0400

    add fix for file writing when dststatus_print=true

    * add local flag to control whether to write the dststatus file
    for a particular RH. This prevents writing a dststatus file for
    consf_aofrac which contains garbage (since the RH is a copy, and
    dststatus field is not set) or a dststatus file for mapcopy

commit 75cc5da12c274b50bd2ea48f53f1f9380531f1f3
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Tue Sep 7 12:41:13 2021 -0600

    add explicit encoding to open statements

commit ffcdf1c867b1fd29415bcc7755f213af064ee70a
Merge: 1b3ae0f a2ed0c7
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Tue Sep 7 10:41:51 2021 -0600

    Merge pull request #2 from DeniseWorthen/feature/cmepsaccum

    fixes for ufs error in completeFieldInitialization

commit a2ed0c75b3c37873a7ab4841783700074f631192
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Tue Sep 7 08:54:06 2021 -0600

    fix compile issue

commit 7fbae523cc05bac470eb7b5ea393a9f306302ade
Author: denise.worthen <denise.worthen@noaa.gov>
Date:   Tue Sep 7 10:04:10 2021 -0400

    clean up trailing whitespace

commit 1d9492e65964de4ddfafa5e4a2815318d4384645
Author: denise.worthen <denise.worthen@noaa.gov>
Date:   Tue Sep 7 09:53:52 2021 -0400

    add chkerrs

commit 81bed32d09226f308ff90e7ac45895aa7df0043a
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Tue Sep 7 07:43:17 2021 -0600

    fix for ufs in completefieldinitialize

    * use newgrid to clarify what is happening in
    * add comments to explain what happens at end of ipdv03p4
    * remove explicit FieldEmptyComplete for grid fields after
    transfer to mesh using NUOPC_realize; add bailout if field
    are not actually complete

commit 4c291c4e2d248666a0d767caf40a1de85b2bf612
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Sep 6 20:51:19 2021 -0600

    refactored different write phases to use module datatypes

commit 8d07938f7b5f8dfcd75c4e4d1023c73c8b0fd632
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Sep 6 14:22:42 2021 -0600

    more cleanup

commit a80f7432016601d7ea5a369abea7da37bc1b673e
Author: denise.worthen <denise.worthen@noaa.gov>
Date:   Sun Sep 5 09:40:20 2021 -0400

    add chkerrs

commit 31525e71e3157fb45cc4d547f594af0ce4033b95
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Sep 4 11:06:57 2021 -0600

    more refactoring of history output to enable code reuse

commit 15e2b9b80b0f0d1197e9a1d2fb995ec35b4e62ac
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Thu Sep 2 16:53:03 2021 -0600

    refactor of med_io_mod time initialization

commit 11357ffb5bf10b1e458967c65c60b96798734372
Merge: be343d8 1b3ae0f
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Wed Sep 1 13:51:18 2021 -0400

    Merge remote-tracking branch 'MV/feature/refactor_accum' into feature/cmepsaccum

commit 63996163f139d83e398bb6775022f2d0a91b87e3
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Aug 30 20:05:39 2021 -0600

    got time average alarms to work correctly

commit 4e6b637a371648da4da1b3f6297e0880b7b0087d
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Aug 30 15:06:44 2021 -0600

    average history file fixes

commit 4dc835f11d6de2bd32546ba2f8a37b1644f1ca5b
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Aug 30 11:44:35 2021 -0600

    more cleanup of new history capability for averaging

commit 6974330999ac71b79fc9a3d61de9d681a57c6663
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Aug 29 17:23:04 2021 -0600

    removed component history phases as run sequence options and moved the calls to post phases

commit f4b9f2d2f7b7aed4c42516261b9a00960e83ec4b
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Aug 27 20:37:51 2021 -0600

    revert to master version

commit 5cd0bb296d39d8e9232ac4c968d7445629b03697
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Aug 27 20:31:34 2021 -0600

    reverted changes to master versions

commit 657ee4bed3e9362ff3084c5bde609593e08a5dae
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Aug 27 20:29:19 2021 -0600

    remote conflict in merge

commit fde3e012a2a0b80cffefde170d5b2e49962c36ca
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Aug 27 20:21:33 2021 -0600

    merge to master

commit 1b3ae0f6d0243dd7f00afdddac44fa4610818b32
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Aug 24 17:31:43 2021 -0600

    added encoding='utf-8' to open file lines in buildexe and buildnml

commit c6d5c116fd7248344c690b97c94c86c5bb7d7e5c
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Aug 24 15:28:59 2021 -0600

    fixes needed for ufs testing failures

commit be343d8ec84e3b940b1cabb0e2546c5393f9c602
Merge: 87290b5 b19355f
Author: denise.worthen <denise.worthen@noaa.gov>
Date:   Sat Aug 21 05:56:19 2021 -0400

    Merge remote-tracking branch 'escomp/master' into feature/updcmeps

commit 87290b5de742905171c24cb04cdc0bd90070a12a
Merge: cc6f2b9 7d7c066
Author: denise.worthen <denise.worthen@noaa.gov>
Date:   Sat Aug 21 05:45:33 2021 -0400

    Merge remote-tracking branch 'upstream/emc/develop' into feature/updcmeps

commit eb8341fbd2ced8346d29dd0e9c452d1978970951
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Aug 17 11:46:03 2021 -0600

    refactored and significantly cleaned up the InitializeIPDv03p4 routine in med.F90

commit 92ba9180522580cd7ae6948d3250bf25180abb38
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Aug 17 11:27:56 2021 -0600

    replaced export accumulator field arrays with just the ocn accumulated field bundle and counter - verified bfb

commit 3f7cafca2178d4c6d5d196ea479589cad5d1113b
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Aug 17 10:02:43 2021 -0600

    removed all references to is_local%wrap%FBImpAccum - this is no longer needed. Validated that results were still bfb

commit 367c0ecc26dc17678eb660872146232fa62558fa
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Aug 17 09:44:01 2021 -0600

    update for prep_rof

commit e06fa827db144f5d5d08412fd2dd337d84a4fb13
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Aug 17 09:05:29 2021 -0600

    more updates to refactor accum and verified that ERS_Vnuopc_Ld5.f19_g17.B1850.cheyenne_intel.allactive-defaultio was bfb with cmeps0.13.25

commit 1ba45a677ce1b1b32fd3be18ccbc5600c4b56420
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Aug 16 19:29:58 2021 -0600

    updated med_merge_mod and associated prep phase interfaces and verified that ERS_Vnuopc_Ld5.f19_g17.B1850.cheyenne_intel.allactive-defaultio was bfb with cmeps0.3.25

commit 4f617580a53eba01d4c2266b9b846fbe92154323
Merge: fccfd3f 5826e50
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Mon Aug 16 16:50:39 2021 -0600

    Merge pull request #1 from DeniseWorthen/feature/history_updates_add_albedos

    history updates, add albedos

commit b19355f961d1b966ec21356ca220b60de37d5c8d
Merge: ec8fd6b 84c3012
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Thu Aug 12 16:22:51 2021 -0600

    Merge pull request #223 from mvertens/feature/fix_xgrid_bugs

    fix aoflux agrid/xgrid problems found in testing
    ### Description of changes
    bug fixes for new agrid/ogrid and restart functionality
    ### Specific notes
    1. add fixes for computing aofluxes on both agrid and xgrid in compsets with data ocean and active atm (i.e. F/Q compsets in CESM)
    2. fix problem associated with running ERS/ERR tests with new introduction of write_restart_at_endofrun
    Contributors other than yourself, if any:
    CMEPS Issues Fixed: None (no issues were raised for the problems being fixed)
    Are changes expected to change answers?
     - [x] bit for bit
    Any User Interface Changes (namelist or namelist defaults changes)?
     - [x] Yes - write_restart_at_endofrun default has been changed
    Testing performed if application target is CESM:(either UFS-S2S or CESM testing is required):
    - [ ] (recommended) CIME_DRIVER=nuopc scripts_regression_tests.py
       - machines:
       - details (e.g. failed tests):
    - [x] (recommended) CESM testlist_drv.xml
       - machines and compilers: cheyenne/intel
       - details (e.g. failed tests):
         -  bfb compared to baseline  cmeps0.13.22,
         - verifed that SMS_Ld7_Vnuopc.f09_g17.B1850.cheyenne_intel.allactive-defaultio cesm2_3_alpha05b_nuopc
    Hashes used for testing:
    - [x] CESM:
      - repository to check out: https://github.com/ESCOMP/CESM.git
      - hashes: cesm2_3_alpha05b with the following changes:
           cime: cime6.0.5
           cism: cismwrap_2_1_87
           cdeps: cdeps0.12.20

commit 84c3012a936e95b98d5ef3b86e17aa2aa1a7ed67
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Aug 11 15:39:51 2021 -0600

    removed references to  is_local%wrap%do_med_aoflux

commit 4fcd0583f737f4f01b2c8c04bc2e58dd78b749ed
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Aug 11 15:37:59 2021 -0600

    removed references to  is_local%wrap%do_med_aoflux

commit 5826e5011861dfa8dc1af03445de383441aa2c27
Merge: 7e9b3f0 7d7c066
Author: Denise Worthen <denise.worthen@noaa.gov>
Date:   Wed Aug 11 17:15:26 2021 -0400

    Merge branch 'NOAA-EMC:emc/develop' into feature/history_updates_add_albedos

commit 83baa6876e063a82a98931e76991baf1d92a4adc
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Aug 11 14:01:47 2021 -0600

    put in fix for history output of agrid aoflux output on ocn grid

commit b4b2a2208102023500239e264a1296422dc70ff7
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Aug 11 10:57:15 2021 -0600

    fixed hafs testing problem

commit 43604f1b3b58d53d3c91f52dbf2c753267e980f5
Merge: 73738ec ec8fd6b
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Aug 9 20:09:00 2021 -0600

    Merge branch 'master' into feature/fix_xgrid_bugs

commit ec8fd6b322ee4c2057189ea8dced8fe5099f1181
Merge: ed310ed b61dff4
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Mon Aug 9 20:08:29 2021 -0600

    Merge pull request #212 from billsacks/pass_ozone

    Add ozone field from atm -> lnd
    ### Description of changes
    Add ozone field from atm -> lnd, and namelist definition for the atm_ozone_frequency variable which will appear in drv_flds_in.
    This will work together with changes in CAM (to send ozone and set atm_ozone_frequency), CESM_share (to facilitate reading atm_ozone_frequency) and CTSM (to receive ozone and read atm_ozone_frequency), but the changes here can be brought in independently of those changes.
    ### Specific notes
    Contributors other than yourself, if any: @mvertens
    Are changes expected to change answers?
     - [x] bit for bit
    Any User Interface Changes (namelist or namelist defaults changes)?
     - [x] No
    Testing performed if application target is CESM:(either UFS-S2S or CESM testing is required):
    - [x] (other) please described in detail
       - SMS_D_Ln1_Vnuopc.f10_f10_mg37.I2000Clm50BgcCropQianRs.cheyenne_intel
       - SMS_D_Ln1_Vnuopc.f10_f10_mg37.F2000climo.cheyenne_intel
    Hashes used for testing:
    - [x] CESM:
      - repository to check out: https://github.com/ESCOMP/CESM.git
      - hash: `997657f`
        - In addition to this CMEPS branch, used:
          - CAM at `8f93d2a`
          - CESM_share at `82006bf`
          - diffs in CLM to call `shr_ozone_coupling_readnl` and print the returned value

commit b61dff448f2a981217ddacaf70e94c3dbf53969a
Merge: 74d3692 ed310ed
Author: Bill Sacks <sacks@ucar.edu>
Date:   Mon Aug 9 17:28:25 2021 -0600

    Merge remote-tracking branch 'origin/master' into pass_ozone

    Resolved Conflicts:
        mediator/esmFldsExchange_cesm_mod.F90

commit 73738ecf245368b6340fc016d9cbf2efe39e7c04
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Aug 9 12:57:44 2021 -0600

    incorporated normalization of one initializaiton in route handle creation subroutine

commit 1595be2b95a160f8ee40ec4de863df3460ab758e
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Aug 9 10:29:53 2021 -0600

    more fixes to get both C, G and F compsets all working

commit 4ad10ab017a5862b61f13b41c950ba5b9883b521
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Aug 8 20:48:34 2021 -0600

    got xgrid and agrid working and verified for f09_f09_mg17 F2000climo

commit bb9cc983d4683187ba2db8cb9929d76bb7f2a850
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Aug 8 14:14:30 2021 -0600

    a bit more cleanup

commit 937dc040ac6118e23a17f5a5082015185a26fc27
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Aug 8 13:26:17 2021 -0600

    fixed bug introduced for F compsets in med.F90

commit 1c930f6e61f47daf0b6961e0993921b78c96b738
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Aug 7 16:38:19 2021 -0600

    more fixes to get aoflux calculation working for all compsets tested

commit 8274bc55066bbf1a419bbbac1551d5801719850a
Merge: 69d5fef ed310ed
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Aug 7 12:02:16 2021 -0600

    merged to cmeps0.13.23

commit ed310edcbd0cf3071085ee7efdc73d7e40bf18f5
Merge: 9749b7d 0b00d51
Author: jedwards4b <jedwards@ucar.edu>
Date:   Sat Aug 7 11:09:59 2021 -0600

    Merge pull request #224 from mvertens/feature/fix_ers_restart

    fix for ERS restart problem

commit 0b00d51ea01772a05fa5952516f51cb50313a208
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Aug 7 10:52:45 2021 -0600

    fix for ERS restart problem

commit 69d5fefa926fa8f6c2c4ecc449e916d14d50fb91
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Aug 7 10:49:37 2021 -0600

    updated logic for write_restart_at_endofrun

commit 8638c9fc4af231d540db2860bd01cd7714406ef0
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Aug 7 10:08:30 2021 -0600

    changed testlist

commit 328203fef88e15ad31c7b9785f8bfbda1e84a283
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Aug 7 09:26:29 2021 -0600

    fixed restart issues and runtime-issues associated with new xgrid logic

commit 8b2a4a01c5d8926a8af1fc0a1f00823ef9b8d276
Merge: b46716a 9749b7d
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Aug 6 16:19:07 2021 -0600

    Merge branch 'master' into feature/fix_xgrid_bugs

commit b46716a30c59eab606ec92f4c4ed230d1fde420f
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Aug 6 16:13:06 2021 -0600

    removed mct tests from testlist_drv.xml and renamed test category aux_cmeps

commit 9749b7dce6467f9df0f641b165520d3c4198d9ae
Merge: 6082732 473607e
Author: jedwards4b <jedwards@ucar.edu>
Date:   Fri Aug 6 13:07:26 2021 -0600

    Merge pull request #221 from jedwards4b/add_rest_option_end

    …run unless restart is none or never

    ### Description of changes

    Adds support for REST_OPTION='end', also all runs with any REST_OPTION other that none or never will write a restart file at the end of the run.

    ### Specific notes

    Contributors other than yourself, if any:

    CMEPS Issues Fixed (include github issue #):

    Are changes expected to change answers?
     - [X] bit for bit
     - [ ] different at roundoff level
     - [ ] more substantial

    Any User Interface Changes (namelist or namelist defaults changes)?
     - [ ] Yes
     - [X] No

    Testing performed if application target is CESM:(either UFS-S2S or CESM testing is required):
    - [X] (recommended) CIME_DRIVER=nuopc scripts_regression_tests.py
       - machines: cheyenne intel nuopc all pass
       - details (e.g. failed tests):
    - [X] (recommended) CESM testlist_drv.xml
       - machines and compilers: cheyenne intel
       - details (e.g. failed tests):
    - [ ] (optional) CESM prealpha test
       - machines and compilers
       - details (e.g. failed tests):
    - [ ] (other) please described in detail
       - machines and compilers
       - details (e.g. failed tests):

    Testing performed if application target is UFS-coupled:
    - [ ] (recommended) UFS-coupled testing
       - description:
       - details (e.g. failed tests):

    Testing performed if application target is UFS-HAFS:
    - [ ] (recommended) UFS-HAFS testing
       - description:
       - details (e.g. failed tests):

    Hashes used for testing:
    - [X] CESM: cesm2_3_alpha5b
      - repository to check out: https://github.com/ESCOMP/CESM.git
      - branch:
      - hash:
    - [ ] UFS-coupled, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:
    - [ ] UFS-HAFS, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:

commit 473607e7241e1887f9434d8db152e6bf5e4edf5f
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Fri Aug 6 13:02:33 2021 -0600

    remove debug print statement

commit 6f92298f7b0e65960a2c5d4889ea81c5adaf9bdd
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Fri Aug 6 12:13:20 2021 -0600

    write mediator restart at endofrun

commit 8ff918f500bc8f955710e74e4aeff42cfc65d996
Merge: dbb2339 6082732
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Aug 6 10:53:04 2021 -0600

    Merge branch 'master' into feature/fix_xgrid_bugs

commit 6082732d36808fd794494c244bb23d0cfed03c7a
Merge: df53e4e c2829e1
Author: jedwards4b <jedwards@ucar.edu>
Date:   Thu Aug 5 14:56:21 2021 -0600

    Merge pull request #222 from mvertens/feature/fix_compile_bug

    fixed nag compilation problem
    ### Description of changes
    fix nag compilation problem

    ### Specific notes
    This lightweight PR fixes a nag compilation problem.

    Contributors other than yourself, if any:

    CMEPS Issues Fixed: None

    Are changes expected to change answers?
     - [x] bit for bit
     - [ ] different at roundoff level
     - [ ] more substantial

    Any User Interface Changes (namelist or namelist defaults changes)?
     - [ ] Yes
     - [x] No

    Testing performed if application target is CESM:(either UFS-S2S or CESM testing is required):
    - [ ] (recommended) CIME_DRIVER=nuopc scripts_regression_tests.py
       - machines:
       - details (e.g. failed tests):
    - [ ] (recommended) CESM testlist_drv.xml
       - machines and compilers:
       - details (e.g. failed tests):
    - [ ] (optional) CESM prealpha test
       - machines and compilers
       - details (e.g. failed tests):
    - [x] (other) please described in detail
       - machines and compilers izumi/intel
       - details (e.g. failed tests): Verified that the following test now builds SMS_D_Ld3_Vnuopc.f45_g37_rx1.A.izumi_nag

    Testing performed if application target is UFS-coupled:
    - [ ] (recommended) UFS-coupled testing
       - description:
       - details (e.g. failed tests):

    Testing performed if application target is UFS-HAFS:
    - [ ] (recommended) UFS-HAFS testing
       - description:
       - details (e.g. failed tests):

    Hashes used for testing:
    - [ ] CESM:
      - repository to check out: https://github.com/ESCOMP/CESM.git
      - branch:
      - hash: cmeps0.13.20
    - [ ] UFS-coupled, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:
    - [ ] UFS-HAFS, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:

commit c2829e1a4f036a74cde28977e9f8b116cccce05d
Author: mvertens <mvertens@ucar.edu>
Date:   Thu Aug 5 13:22:32 2021 -0600

    fixed ang compilation problem

commit 59fcbb3c37b0c05052928f79ea9c9838322bde0a
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Aug 5 13:11:21 2021 -0600

    add support for REST_OPTION end and always write a restart at end of run unless restart is none or never

commit dbb23393925ad5e4160d2627258197df93656936
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Thu Aug 5 11:25:04 2021 -0600

    fixes to have agrid/xgrid in F compsets - including everyone on the same grid

commit df53e4e1947984433c6ba8c7f7f2f41d463a1de4
Merge: 95a5ef0 c0d8e01
Author: jedwards4b <jedwards@ucar.edu>
Date:   Wed Aug 4 15:00:42 2021 -0600

    Merge pull request #219 from mvertens/feature/fix_runseq_bug

commit c0d8e01f6330ee0d82fcef8f26c0be188d251e11
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Aug 4 14:52:17 2021 -0600

    fixed run sequence bug for G and C compsets

commit 95a5ef0646d3c3c8ba80b2ef4e01c6e286b4ad45
Merge: 908b1b2 1430301
Author: jedwards4b <jedwards@ucar.edu>
Date:   Tue Aug 3 15:30:21 2021 -0600

    Merge pull request #218 from mvertens/feature/fix_cimeconfig_bug

commit 14303018b3d754e36b213d5df6b0005268c50757
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Aug 3 15:00:13 2021 -0600

    fix typo in config_component_cesm.xml

commit 908b1b27b623c0d8b784588a8be900aa4eb03fba
Merge: 53183fa fc1182f
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Mon Aug 2 11:35:38 2021 -0600

    Merge pull request #216 from mvertens/feature/exchange_grid

    expand aoflux calculation to include atmosphere grid and exchange grid
    - Previously the aoflux computation in the mediator could only be done on the ocean mesh. With this PR the aoflux computation can now be done on the ocean mesh, the atmosphere mesh or the exchange grid.
    - As part of this the mid-year restart bug Allow mid-year restart with active GLC/CISM #143 has been resolved. This also needs an update to cism that is coming in to a separate PR. The following test now passes: ERS_Vnuopc_Lm13.f10_f10_mg37.I1850Clm50SpG
    - esmFldsExchange_cesm.F90 has be refactored in order to explicitly indicate every field rather than using the fldnames loop. This will help in the migration to the new python based capability being developed by @uturuncoglu.

commit fc1182f912fb7a2a7aba29db951803bf03c96676
Merge: 36f54b9 53183fa
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Aug 2 11:32:28 2021 -0600

    merge to cmeps0.13.9

commit 53183fad253bb65b3a6866b10e7b9187576b72a5
Merge: 6ff50be 59a59c2
Author: mvertens <mvertens@users.noreply.github.com>
Date:   Mon Aug 2 11:15:32 2021 -0600

    Merge pull request #215 from mvertens/feature/new_run_sequence

    new run sequence for B1850 nuopc validation
    This PR requires ESMF https://github.com/esmf-org/esmf/releases/tag/ESMF_8_2_0_beta_snapshot_13 and later snapshots.
    With this new snapshot, this PR does the following:
    1) Enables a new run RASM_OPTION1 sequence for fully coupled CESM nuopc simulations.
    The new run sequence will look like the following:
    ```
    @432000
    @10800
    @3600
    @1800
      MED med_phases_aofluxes_run
      MED med_phases_prep_ocn_accum
      MED med_phases_ocnalb_run
      MED med_phases_diag_ocn
    @@3600
      MED med_phases_prep_ocn_avg
      MED -> OCN :remapMethod=redist
    @@
    ```
    With this new run sequence, careful comparison with the RASM_OPTION1 cesm simulation validated this configuration for NUOPC with POP.
    2) A fix to the budget table has been put in place to fix problems with MOM6 budgets when running a fully coupled simulation.

commit 36f54b9f822359f1bbe58013b4f2e0366ac6a929
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Aug 1 12:42:21 2021 -0600

    fixed but for So_t to ice in esmFldsExchange_cesm.F90

commit 76c57ae68ef4116dc56d93803467f6f38e8fbac6
Merge: d5dc9a9 8779990
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Jul 31 19:59:10 2021 -0600

    Merge branch 'feature/fix_mom6diags' into feature/exchange_grid

commit d5dc9a9df2f98e9b2e04e57cdd2ec6cd03b983ad
Author: mvertens <mvertens@ucar.edu>
Date:   Sat Jul 31 15:09:06 2021 -0600

    updates for glc prep

commit fd3fe24e2d4bd680ea9eb5ddc2be5e67fa598c32
Author: mvertens <mvertens@ucar.edu>
Date:   Fri Jul 30 11:16:59 2021 -0600

    fixed xgrid 2nd order mapping

commit e45d525b302447da601541a2f0222c3699c19d76
Author: mvertens <mvertens@ucar.edu>
Date:   Thu Jul 29 22:39:35 2021 -0600

    added second order conservative for Sa_u and Sa_v to xgrid

commit b8a6dbba38d7f519aba39a4f7abeb9d7fea8b7a0
Author: mvertens <mvertens@ucar.edu>
Date:   Thu Jul 29 19:54:23 2021 -0600

    update to fix xgrid mapping to ocn

commit 7e9b3f0abf537d1716bdca02e960c0bd9f4acfd0
Merge: 9b53ff7 adca0ed
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Thu Jul 29 15:54:42 2021 -0400

    Merge branch 'emc/develop' into feature/history_updates_add_albedos

commit 29391929746b35470066825e92d425706138ea22
Author: mvertens <mvertens@ucar.edu>
Date:   Thu Jul 29 13:13:23 2021 -0600

    updates to get mid-year restarts working with CISM - resolves #143

commit 74d3692b03e87ccd3455d3fc4ad4bfec5cfcc61e
Author: Bill Sacks <sacks@ucar.edu>
Date:   Wed Jul 28 17:07:35 2021 -0600

    Use mol/mol for units of Sa_o3

    Based on input in https://github.com/ESCOMP/CAM/pull/404

commit 6ff50be34c0fe2836d1eb5072c15d2b812293c01
Merge: 22dc297 f461876
Author: Ufuk Turunçoğlu <turuncu@ucar.edu>
Date:   Wed Jul 28 14:57:08 2021 -0600

    Merge pull request #217 from hafs-community/feature/pr

    Update for HAFS coupling mode and changes that are required for WW3 coupling under UFS

commit 19d9a571b7cdecbd1da664f20d2635abcf59f5a6
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Jul 25 19:56:34 2021 -0600

    fixed problem when atm/ocn grid are the same and compilation with gnu

commit 09e3e146fb654d402780b915de92c06ca23dc992
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Jul 25 19:10:00 2021 -0600

    removed DEBUG writes

commit 05fdf8d075f1cc80e154bba8a35adc62dd706d45
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Jul 25 14:21:17 2021 -0600

    more cleanup of esmFldsExchange_cesm_mod

commit b06520730dda01907ad233d613b70be257dd0d13
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Jul 25 14:09:04 2021 -0600

    more modularization of med_phases_aoflux

commit 88804819fa9de09562bfe0b57b69e22f168e8e60
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Jul 25 13:43:55 2021 -0600

    more refactor updates to modularize aoflux calculation

commit 3b275b605ec13fafeb890ce3470be537b35e3000
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Jul 25 11:02:29 2021 -0600

    refactored med_phases_aofluxes_mod for more code reuse

commit f461876a3e8f1af0d43e080ba08368408c553f46
Merge: ca1bfc4 22dc297
Author: Ufuk Turuncoglu <ufuk.turuncoglu@noaa.gov>
Date:   Fri Jul 23 15:20:18 2021 -0500

    sync with ESCOMP master

commit ca1bfc44023db45119daba9ee94e0c62067a2b4b
Merge: b367433 d379e47
Author: Bin Liu <bin.liu@noaa.gov>
Date:   Fri Jul 23 16:03:25 2021 -0400

    Merge pull request #5 from hafs-community/feature/hafs_coupleww3

    Merge feature/hafs_coupleww3 branch back to support/HAFS branch

commit d379e47c66336a3f4c3ba239e96f8e6f33eb152a
Author: Ufuk Turuncoglu <ufuk.turuncoglu@noaa.gov>
Date:   Fri Jul 23 00:21:33 2021 -0500

    fix for atm-wav configuration

commit af38a87a78a1c1c565ce02d7a0ca4ce536cc76cd
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Thu Jul 22 19:05:46 2021 -0600

    cleanup

commit 4ce60e9f78d6cedb67042f23a3a6b8be6511852e
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Jul 22 14:03:54 2021 -0600

    fix build issues

commit c632e8aaa7d50ad324bff17c59b69f54d89c2f5b
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Jul 22 13:27:34 2021 -0600

    fix pylint issue, update github workflow esmf version

commit 59a59c288b86c3265e5e2285353687f228322eda
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Jul 22 13:19:14 2021 -0600

    update ESMF version in github action

commit b1d1e50b446591caecea4a31688111d2f8115cac
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Jul 21 21:14:17 2021 -0600

    updates to get both aoflux agrid and xgrid working

commit 9b53ff7528dc2cdfc8bef444d6db566219c944d0
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Wed Jul 21 19:04:32 2021 -0600

    make diag_init optional

commit 12681eb5f641de53d38ad06a64e55d2aeb5f5343
Merge: 3cdfe02 215bc3b
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Wed Jul 21 12:57:40 2021 -0400

    Merge remote-tracking branch 'origin/feature/add_albedos' into feature/history_updates

commit 3cdfe02debd238cda5e7ec87b7c6b2ef30051872
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Wed Jul 21 09:23:23 2021 -0400

    wrap long line

commit 89c720f93942558a974fa8dafc08e948aafd1dc7
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Wed Jul 21 09:14:46 2021 -0400

    white space and config changes

commit 4445e35f62bd59808c49f7e9cc78c2d1cfbd5e31
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Tue Jul 20 17:24:12 2021 -0400

    propagate name changes

    * change history config variables to match code

commit cf77f348b0a48039267ab11a3f872ce110836576
Author: Ufuk Turuncoglu <ufuk.turuncoglu@noaa.gov>
Date:   Tue Jul 20 16:17:53 2021 -0500

    add missing code for wave coupling

commit ac0ef28f5e8f719be5e04a24b5122c6c5142f596
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Tue Jul 20 14:03:14 2021 -0600

    change order of history options in config

    * append component name and averaging type to history_n
    and history_option variables
    * trailing whitespace cleanup

commit d54013a99bc9ca89052699776ce17932b6bedcf7
Merge: 5b3bde1 b367433
Author: Bin.Liu <Bin.Liu@noaa.gov>
Date:   Mon Jul 19 14:05:56 2021 -0500

    Merge remote-tracking branch 'origin/support/HAFS' into feature/hafs_coupleww3
    Conflicts solved by Ufuk, Dan, and Bin.

commit ef54ef96b12b6621b5d4c30dd3461a901d140c12
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Jul 19 15:23:02 2021 -0600

    updates to get aoflux on atm grid working

commit 1e7b3989abff2d53fff2a58254c70a8658fe49e1
Author: Bill Sacks <sacks@ucar.edu>
Date:   Mon Jul 19 14:37:46 2021 -0600

    Fix Sa_o3 description

commit b367433e7f6602599a4f0c5e903c4f3bbc7286ea
Merge: 3fff4b7 bf6f2a5
Author: Bin Liu <bin.liu@noaa.gov>
Date:   Mon Jul 19 14:52:44 2021 -0400

    Merge pull request #4 from hafs-community/feature/hafs_couplehycom_cdeps

    Merge feature/hafs_couplehycom_cdeps back to support/HAFS

commit d30c9c1a144ccd43dd4bc90f4d17988567f6bf9a
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Jul 18 17:54:06 2021 -0600

    more updates to have new code working on ogrid

commit b4a19837492f3424084c16996a8ff00207f71082
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sun Jul 18 14:54:34 2021 -0600

    refactor of mapping file specification

commit 4372fe2a8582a0e0a0de2e4a49e30b614c67d827
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Jul 17 21:09:37 2021 -0600

    fixes to get flux computation on ocean grid working

commit 3a5725c6f751ba28a0a7a6494b9b1834fa5d9b5d
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Jul 17 20:40:37 2021 -0600

    bug fixes

commit 0e662b0b62db49e2ce8c79587801a3a144dd84a8
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Sat Jul 17 17:56:51 2021 -0600

    first implementation of exchange grid

commit 215bc3b57058af1910570b7eabea4f61e0a0f8e6
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Fri Jul 16 15:06:34 2021 -0600

    add albedo fields ice->atm

commit 5b3bde182f58254d3f0c2a5df7106f3af43b81f5
Merge: cf8021c 3fff4b7
Author: Bin.Liu <Bin.Liu@noaa.gov>
Date:   Fri Jul 16 11:08:40 2021 -0500

    Merge remote-tracking branch 'remotes/origin/support/HAFS' into feature/hafs_coupleww3

commit 2198e53ca71053a98d27d5005e9d016926657ce1
Merge: 08f18b5 22dc297
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Thu Jul 15 17:54:26 2021 -0400

    Merge remote-tracking branch 'escomp/master' into feature/history_updates

commit 08f18b535b28711b34e27a70195448e693730ef6
Merge: d5428cf fccfd3f
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Thu Jul 15 17:17:00 2021 -0400

    Merge remote-tracking branch 'MV/features/history_updates' into feature/history_updates

commit 02169c597c9163fa8ff1f7c26c867753c1e77e22
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Wed Jul 14 21:48:45 2021 -0600

    changes to get B1850 compset restart test passing

commit bf6f2a5669621920a445af4ae94d615c8e0cd0af
Merge: c095e5c 3fff4b7
Author: Bin.Liu <Bin.Liu@noaa.gov>
Date:   Wed Jul 14 15:52:37 2021 -0500

    Merge remote-tracking branch 'remotes/origin/support/HAFS' into feature/hafs_couplehycom_cdeps

commit 480b2a8aebfa7c12f37fb27aa5f8919ddca1e4ca
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Tue Jul 13 21:08:29 2021 -0600

    fix to get mom6 budgets working for b1850mom

commit 3fff4b7a88b55effaecb714f5f637f925283f920
Merge: 733c16d d5428cf
Author: Bin.Liu <Bin.Liu@noaa.gov>
Date:   Tue Jul 13 11:58:36 2021 -0500

    Merge remote-tracking branch 'remotes/upstream/emc/develop' into support/HAFS

commit 87799909bd27c2bbd6b731ee4fdf7f13ebe026e4
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Jul 12 10:30:08 2021 -0600

    fix diags to work with mom6

commit 66887b71f7201ab700fef4619675294b0789935f
Author: Bill Sacks <sacks@ucar.edu>
Date:   Sun Jul 11 18:30:25 2021 -0600

    Remove valid values for atm_ozone_frequency

    The code to parse this value will live in a different repository (in the
    share code), so it would be annoying to have the valid values here: if a
    new valid value is added, changes would be needed here in addition to
    the share code.

commit cf3dc8f6794f0be2c2b9b6094eff7059c95f4a7c
Author: Bill Sacks <sacks@ucar.edu>
Date:   Sun Jul 11 17:16:45 2021 -0600

    Add atm_ozone_frequency drv_flds_in namelist variable

commit 733c16d4e5ed9283f7bb659d5f36ee1f95de5983
Merge: 9f190dc e40bc30
Author: Bin.Liu <Bin.Liu@noaa.gov>
Date:   Fri Jul 9 15:49:24 2021 -0500

    Merge commit 'e40bc304d91c4df6333e7164e859f1830646794f' into support/HAFS

commit a375d99573c7a574f02e2778e52d896948ffbb78
Author: Bill Sacks <sacks@ucar.edu>
Date:   Wed Jul 7 15:41:47 2021 -0600

    Add an atm->lnd Sa_o3 field

commit 22dc297fa3f77cf1a232618f5428c89b460032ca
Merge: e4f5384 4f1a4af
Author: jedwards4b <jedwards@ucar.edu>
Date:   Wed Jun 30 10:52:00 2021 -0600

    Merge pull request #209 from jedwards4b/timeInit_fix

    fix unitialized variable in timeInit, remove option ifdays0

commit e4f5384a8e0263fc8378d92df626b48057a81b3b
Merge: 537740f 0d54e30
Author: jedwards4b <jedwards@ucar.edu>
Date:   Wed Jun 30 10:51:35 2021 -0600

    Merge pull request #210 from jedwards4b/force_py3

    change all shebangs to explicitly use python3

commit 0d54e30bbefdfff72be8a134add1d7baa7aaec95
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Tue Jun 29 16:07:07 2021 -0600

    change all shebangs to explicitly use python3

commit 537740f9a2a4b2e22ea361a2e76c7136b2e669a1
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Mon Jun 28 14:29:54 2021 -0600

    add GPU per node variables from cime PR #3989

commit 4f1a4af743fcc3615b7923ef73de7efc2e4724b8
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Fri Jun 25 11:28:23 2021 -0600

    fix unitialized variable in timeInit, remove option ifdays0

commit cc6f2b953e50f7b82efff2fea3b82377b2aaf75a
Merge: 94964bf 0b2fa2f
Author: denise.worthen <denise.worthen@noaa.gov>
Date:   Thu Jun 24 11:43:28 2021 -0400

    Merge remote-tracking branch 'escomp/master' into feature/updcmeps

commit c095e5c35d9ae4ee84792614bdca87d2bc3219f9
Author: Ufuk Turuncoglu <ufuk.turuncoglu@noaa.gov>
Date:   Fri Jun 18 16:30:01 2021 -0500

    update nems specific field dictionary and add new field for ERA5

commit 86ddf0ae38fefe44de2f1215a41b7db6ad4e015c
Author: Ufuk Turuncoglu <ufuk.turuncoglu@noaa.gov>
Date:   Fri Jun 18 16:29:07 2021 -0500

    update HAFS specific field exchnage file and remove system_type

commit 0b2fa2f873fbf9c4f26e1c1ce912dee8c5f133f8
Merge: 307d2be bce1ecd
Author: jedwards4b <jedwards@ucar.edu>
Date:   Thu Jun 17 10:10:46 2021 -0600

    Merge pull request #207 from jedwards4b/esmf_aware_threading_fixes

    ### Description of changes
    Add code to buildexe script to check that ESMF VERSION is new enough.  ESMF 8.1 is required unless ESMF_AWARE_THREADING is enabled which requires 8.2.0

    ### Specific notes

    Contributors other than yourself, if any:

    CMEPS Issues Fixed (include github issue #):

    Are changes expected to change answers?
     - [X] bit for bit
     - [ ] different at roundoff level
     - [ ] more substantial

    Any User Interface Changes (namelist or namelist defaults changes)?
     - [ ] Yes
     - [X] No

    Testing performed if application target is CESM:(either UFS-S2S or CESM testing is required):
    - [X] (recommended) CIME_DRIVER=nuopc scripts_regression_tests.py
       - machines: cheyenne intel (all pass)
       - details (e.g. failed tests):
    - [ ] (recommended) CESM testlist_drv.xml
       - machines and compilers:
       - details (e.g. failed tests):
    - [ ] (optional) CESM prealpha test
       - machines and compilers
       - details (e.g. failed tests):
    - [ ] (other) please described in detail
       - machines and compilers
       - details (e.g. failed tests):

    Testing performed if application target is UFS-coupled:
    - [ ] (recommended) UFS-coupled testing
       - description:
       - details (e.g. failed tests):

    Testing performed if application target is UFS-HAFS:
    - [ ] (recommended) UFS-HAFS testing
       - description:
       - details (e.g. failed tests):

    Hashes used for testing:
    - [ ] CESM:
      - repository to check out: https://github.com/ESCOMP/CESM.git
      - branch:
      - hash:
    - [ ] UFS-coupled, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:
    - [ ] UFS-HAFS, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:

commit bce1ecdc83713e7fe1814299ddbea9c5ba5db01c
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Jun 17 09:30:01 2021 -0600

    move the version check to buildnml for faster feedback to user

commit 11bcd200a6faf27ad97c7f34b943da6da247443a
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Thu Jun 17 08:03:38 2021 -0600

    esmf aware threading now works with esmf 8.2.0b10 or newer

commit 307d2bee5f98e09041eb0fa229a5a8c304c89564
Merge: c08337f 65045d2
Author: jedwards4b <jedwards@ucar.edu>
Date:   Tue Jun 15 07:24:58 2021 -0600

    Merge pull request #205 from mvertens/feature/validation_bugfixes

    ### Description of changes

    The mapping of Faoo_fco2_ocn must have a normalization of 1 and must be mapped with mapconsd NOT mapconsf.

    ### Specific notes
    This was found during the validation of the compset
    `1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO_MOSART_SGLC_WW3_BGC%BPRP
    `
    at f19_g17

    This also fixes the problem encountered running a B1850 compset with cmeps0.13.10
    Its important to note that current any mapping type for a given source->destination pair can only have one normalization.
    The problem was that between ocn->atm the old mapping for Faoo_fco2_ocn was mapconsf and the normalization was 1.
    The new error check introduced by @DeniseWorthen found a problem with the So_t between ocn->atm was trying to use a normalization of 'ofrac'.

    Contributors other than yourself, if any:

    CMEPS Issues Fixed: #204

    Are changes expected to change answers?
     - [x] bit for bit
     - [ ] different at roundoff level
     - [ ] more substantial

    Any User Interface Changes (namelist or namelist defaults changes)?
     - [ ] Yes
     - [x] No

    Testing performed if application target is CESM:(either UFS-S2S or CESM testing is required):
    - [ ] (recommended) CIME_DRIVER=nuopc scripts_regression_tests.py
       - machines:
       - details (e.g. failed tests):
    - [ ] (recommended) CESM testlist_drv.xml
       - machines and compilers:
       - details (e.g. failed tests):
    - [ ] (optional) CESM prealpha test
       - machines and compilers
       - details (e.g. failed tests):
    - [x] (other) please described in detail
       - machines and compilers
       - details (e.g. failed tests):
       Verified that the following test ran: SMS_Ld1_Vnuopc.f19_g17.B1850.cheyenne_intel

    Testing performed if application target is UFS-coupled:
    - [ ] (recommended) UFS-coupled testing
       - description:
       - details (e.g. failed tests):

    Testing performed if application target is UFS-HAFS:
    - [ ] (recommended) UFS-HAFS testing
       - description:
       - details (e.g. failed tests):

    Hashes used for testing:
    - [ ] CESM:
      - repository to check out: https://github.com/ESCOMP/CESM.git
      - hash: cesm2_3_beta03  (updated CIME to 71ddf1ced - current master)
    - [ ] UFS-coupled, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:
    - [ ] UFS-HAFS, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:

commit 65045d27a0e8476260734910b08b0e2581c56a45
Author: Jim Edwards <jedwards@ucar.edu>
Date:   Tue Jun 15 07:13:54 2021 -0600

    change this from INFO to ERROR

commit d5b824646d3d1e3973f8dfb00335c25624bdc9b7
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Jun 14 16:10:37 2021 -0600

    removed extraneous do loop

commit 1d847042e1082e2927d38d37c186a2cae3a6f2e5
Merge: c95b935 c08337f
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Mon Jun 14 15:51:14 2021 -0600

    Merge tag 'cmeps0.13.10' into feature/validation_bugfixes

    cmeps0.13.10

commit 94964bf3d28e14fd400e8804cdf44a990dbbca29
Merge: e40bc30 c08337f
Author: denise.worthen <Denise.Worthen@noaa.gov>
Date:   Fri Jun 11 13:36:46 2021 -0400

    Merge remote-tracking branch 'escomp/master' into feature/updcmeps

commit c95b935c5da2149501711e8c4982519771e10a4b
Author: Mariana Vertenstein <mvertens@ucar.edu>
Date:   Fri Jun 11 10:57:11 2021 -0600

    validation bug fixes

commit c08337f41befcb8ee1fbc9871af33b80e6e6f662
Merge: b5b67e4 d7c6346
Author: jedwards4b <jedwards@ucar.edu>
Date:   Thu Jun 10 13:05:03 2021 -0600

    Merge pull request #198 from DeniseWorthen/feature/escompPR

    ### Description of changes

    Adds a second conservative mapping type (consf_aofrac) for use by ufs-weather which normalizes some ATM->OCN fluxes by the open water fraction on the ATM grid.

    ### Specific notes

    - adds a model abort if a user attempts to specify a second normalization type for a given ``n1:n2:maptype``. This enforces the single normalization restriction for the packed field bundles which is noted in the code comments but not otherwise enforced.
    - adds a second mapconsf routehandle for the second normalization type for use when coupling mode is ``nems_orig`` or ``nems_frac``. The second RH will be created only if mapconsf does not yet exist; if it exists the second RH will be a copy.
    - implements unity normalization for ufs-weather in esmFldsExchange_nems
    - fixes a gnu compile error for ufs-weather in ``med_fldList_Document_Mapping``
    - removes fd_nems.yaml since it is now required in ufs-weather when CMEPS is not in use (e.g. standalone ATM or JEDI).
    - fixes unitialized AccumCnts

    Contributors other than yourself, if any:

    CMEPS Issues Fixed (include github issue #):

    Are changes expected to change answers?
     - [x] bit for bit
     - [ ] different at roundoff level
     - [ ] more substantial

    Any User Interface Changes (namelist or namelist defaults changes)?
     - [ ] Yes
     - [ ] No

    Testing performed if application target is CESM:(either UFS-S2S or CESM testing is required):
    - [ ] (recommended) CIME_DRIVER=nuopc scripts_regression_tests.py
       - machines:
       - details (e.g. failed tests):
    - [ ] (recommended) CESM testlist_drv.xml
       - machines and compilers:
       - details (e.g. failed tests):
    - [ ] (optional) CESM prealpha test
       - machines and compilers
       - details (e.g. failed tests):
    - [ ] (other) please described in detail
       - machines and compilers
       - details (e.g. failed tests):

    Testing performed if application target is UFS-coupled:
    - [X] (recommended) UFS-coupled testing
       - description: ufs-weather-model [177ea10
    ](https://github.com/ufs-community/ufs-weather-model)

       - details (e.g. failed tests): This commit contains the current emc/develop branch of CMEPS updated with the latest ESCOMP/master. It breaks current RT baselines for ufs-weather solely because the number of components is now 9

     ```
     Dimension ExpAccumCnt_nx differs            9  /=            8
     Dimension ImpAccumCnt_nx differs            9  /=            8
    ```
    All other fields in all Restarts (ATM, ICE, OCN) are B4B for the current top of ufs-weather except this difference in the CMEPS restart file.

    Testing performed if application target is UFS-HAFS:
    - [ ] (recommended) UFS-HAFS testing
       - description:
       - details (e.g. failed tests):

    Hashes used for testing:
    - [ ] CESM:
      - repository to check out: https://github.com/ESCOMP/CESM.git
      - branch:
      - hash:
    - [X ] UFS-coupled, then umbrella repostiory to check out and associated hash:
      - repository to check out: https://github.com/ufs-community/ufs-weather-model
      - branch:develop
      - hash: 177ea10
    - [ ] UFS-HAFS, then umbrella repostiory to check out and associated hash:
      - repository to check out:
      - branch:
      - hash:

commit b5b67e4acd29f3f72921e7e22f319ae35f961716
Merge: 4736b97 d865106
Author: jedwards4b <jedwards@ucar.edu>
Date:   Thu Jun 10 13:01:52 2021 -0600

    Merge pull request #193 from jedwards4b/add_stop_option_date

    add support for stop_option date
    ### Description of changes

    Add support to esm_time_mod.F90 for stop option 'date'.  Change some ESMF log info messages to esmf log error.

    ### Specific notes

    Contributors other than yourself, if any:

  …
DeniseWorthen pushed a commit to DeniseWorthen/CMEPS that referenced this issue May 9, 2023
@mvertens
Merge pull request NOAA-EMC#2 from mvertens/feature/remove_mct_from_s…
bcd23e4 
…hare

updates to remove mct_mod and all other mct related files from share/
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@DeniseWorthen