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Separate chgres for ensemble recentering to new task #8

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CoryMartin-NOAA opened this issue Jun 8, 2020 · 1 comment
Closed

Separate chgres for ensemble recentering to new task #8

CoryMartin-NOAA opened this issue Jun 8, 2020 · 1 comment

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@CoryMartin-NOAA
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In forked branch: https://github.com/CoryMartin-NOAA/GSI/tree/feature/gdaschgres

Currently, calcanl_gfs.py computes the full resolution analysis by interpolating the analysis increment. For the GDAS cycle, it runs enkf_chgres_recenter to regrid the GDAS forecast to the ensemble resolution for use in the recentering step. This regridding can be done after gdasfcst rather than during gdasanalcalc in order to limit the amount of time the workflow waits before the EnKF can start.

This change will also introduce changes to the existing python scripts to:

  • improve readability with 4 spaces instead of 2 (pycodestyle convention)
  • add print statements for linking and copying files as well as making directories
KarinaApodaca-NOAA pushed a commit to KarinaApodaca-NOAA/GSI that referenced this issue Jun 9, 2020
@KateFriedman-NOAA
Issue NOAA-EMC#8 - pulled in config.metp and modifications to two set…
1915aa9 
…up scripts
KarinaApodaca-NOAA pushed a commit to KarinaApodaca-NOAA/GSI that referenced this issue Jun 9, 2020
@KateFriedman-NOAA
Issue NOAA-EMC#8 - add switch for MET+ jobs
2552467
KarinaApodaca-NOAA pushed a commit to KarinaApodaca-NOAA/GSI that referenced this issue Jun 9, 2020
@KateFriedman-NOAA
Merge pull request NOAA-EMC#28 from NOAA-EMC/feature/metplus2
0377d20 
Issue NOAA-EMC#8 - add switch for MET+ jobs
RussTreadon-NOAA added a commit to CoryMartin-NOAA/GSI that referenced this issue Jun 16, 2020
@RussTreadon-NOAA
Issue NOAA-EMC#8: rename JGLOBAL_CHGRESFCST and exglobal_chgresfcst_f…
ef6f474 
…v3gfs.sh.ecf
@CoryMartin-NOAA
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This has been completed and merged to release/gfsda.v16.0.0 via PR #21 . Will close once it is merged into GSI master branch.

RussTreadon-NOAA added a commit to RussTreadon-NOAA/GSI that referenced this issue Oct 15, 2020
@RussTreadon-NOAA
GitHub Issue NOAA-EMC#2 merge release/gfsda.v16.0.0 at 1d3e30a into m…
8b8673e 
…aster

Squashed commit of the following:

commit 1d3e30a844c163224bb2ab81bdb5234daabbc7ef
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Oct 13 20:49:12 2020 +0000

    Issue #2:  fix runtime errors flagged by debug global_gsi.x - committed changes do not alter analysis results

commit 5d40197db645bc69e7f0bb48230832583f5e56d5
Merge: 89f85ed6 5c097753
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Tue Oct 13 15:30:19 2020 -0400

    Merge pull request #71 from HaixiaLiu-NOAA/feature/gfsda.v16.0.0_bugfix

    bug fix for reading seviri asr data

commit 5c09775305492617c9abc302e38f223548105673
Author: Haixia Liu <Haixia.Liu@noaa.gov>
Date:   Fri Oct 9 18:39:16 2020 +0000

    bug fix for reading seviri asr data

commit 89f85ed60268e3ff535942b97ec8bc1b550d6f2b
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Oct 6 10:11:23 2020 +0000

    Issue #2:  remove variables MPI3 and MPI3FLAG from ush/build_all_cmakes since not used

commit fb31aa6b941158ed1f77bdb080a571d2e1035092
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Oct 1 18:40:29 2020 -0500

    Issue #2:  update modulefiles for various platforms (correct typos, cleanup, update versions)

commit 937cc3cc5d6c8d1a7601dafbde9eab3c9dad5a7c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Oct 1 19:16:40 2020 +0000

    Issue #2:  update wcoss_c and hera modulefiles to use GFS v16 versions

commit 2c901a4cefda8e53cb1bed64e090a55a8c4653ee
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Oct 1 12:20:56 2020 +0000

    Issue #2:  update wcoss_c and wcoss-d modulefiles to use modules from nwprod

commit 5c12435def1802af367f6a98a3f775cac2ece5b9
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Sep 30 21:10:55 2020 +0000

    Issue #2:  update modulefile.ProdGSI.wcoss_d to use modules from nwtest and prod

commit 54d22190d3c1dc6a45a2e7de5850c8f1f29b0f3a
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Sep 29 21:07:34 2020 +0000

    Issue #2:  update fix submodule to point at DA_GFSv16_global_only at 928d56d8 (clean up fix/Big_Endian)

commit 00b24fd7ce98fc19b4dbf936d89bb9bacff10731
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Sep 29 20:59:19 2020 +0000

    Issue #2:  miscellaneous clean up in preparation for gfsda.v16.0.0 code delivery

     * remove global jobs and scripts no longer used
     * rename nc_diag executables in accordance with WCOSS Implementation Standards
     * update gfsda.v16.0.0 release notes

commit 68f90db7e397ab78ff7bd5a1ca4e5624afc9de9c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Sep 28 16:54:25 2020 +0000

    Issue #2:  update fix submodule to point at DA_GFSv16_global_only at 243711ba

commit 8ad168482a5be02cc3ecdc6f1e65ab6872433fcf
Merge: 27e5f338 12533a82
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Fri Sep 25 22:18:05 2020 -0400

    Merge pull request #65 from lbi2018/release/gfsda.v16.0.0.HDOB

    Release/gfsda.v16.0.0.hdob

commit 12533a827793b8165b0c2a026b3882bb7819a46e
Author: Li Bi <Li.Bi@noaa.gov>
Date:   Sat Sep 26 00:57:47 2020 +0000

    Fix for the array bound failure

commit cd19d37d6bb99a88ab0f77c36b606e71149eca5d
Author: Li Bi <Li.Bi@noaa.gov>
Date:   Fri Sep 25 15:40:36 2020 +0000

    292 to 213 update for gsimod.f90obsmod.F90 setupspd.f90

commit 9ae687b215c270da822a164f345c05542b934b54
Author: Li Bi <Li.Bi@noaa.gov>
Date:   Fri Sep 25 14:36:47 2020 +0000

    release/gfsda.v16.0.0.HDOB: global_convinfo.txt prepobs_errtable update

commit 9a883dff32058be997e20b84624bdaf290939eb8
Merge: faf08e2d 27e5f338
Author: Li Bi <Li.Bi@noaa.gov>
Date:   Fri Sep 25 13:31:28 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0.HDOB

    Conflicts:
    	fix

commit faf08e2d6787f252704c4e5094463e836851dc9b
Author: Li Bi <Li.Bi@noaa.gov>
Date:   Fri Sep 25 03:07:32 2020 +0000

    Replace 292 with 213 for the SFMR winds type change

commit 8541dc9f174767be6cbca1969df8b02908dbf082
Author: Li Bi <Li.Bi@noaa.gov>
Date:   Fri Sep 25 02:43:15 2020 +0000

    Add conv_spd to exglobal_diag file

commit a801f3b318ca254f8c2bc648eec9d3e0763617f4
Merge: 43962b08 6587af79
Author: Li Bi <Li.Bi@noaa.gov>
Date:   Fri Sep 25 02:27:15 2020 +0000

    Merge remote-tracking branch 'origin/release/gfsda.v16.0.0.HDOB' into release/gfsda.v16.0.0.HDOB

commit 43962b08f755d4b6110e8579f77634e14790ae3e
Merge: 96996100 30e24ea3
Author: Li Bi <Li.Bi@noaa.gov>
Date:   Tue Sep 22 14:43:02 2020 +0000

    Merge remote-tracking branch 'origin/release/gfsda.v16.0.0.HDOB' into release/gfsda.v16.0.0.HDOB

commit 27e5f338e10ddeea48c042c7b20dc515f0d17fd6
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Sep 24 19:22:50 2020 +0000

    Issue #2:  update libsrc to branch DA-FV3-IMPL-empty at commit e3cb6fc

commit 78bc54a8848854f786a0c4388a99a43c13c6aaae
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Sep 24 19:08:32 2020 +0000

    Issue #2:  update fix/prepobs_errtable.global (set obs type 260 uv error to 0.10000E+10)

commit 28d7f6af96351031324b80d3fbbd1bcb18fe9d54
Merge: aa09b386 b2458c9d
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Thu Sep 24 13:27:38 2020 -0400

    Merge pull request #63 from ilianagenkova/feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

    Added a NC005091 (VIIRS winds in new BUFR) bug fix into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit b2458c9d0e71d35cbdfec486989e3a7c0df22d78
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Thu Sep 24 12:01:57 2020 -0400

    Remove a comment sign

commit 6767d45c7c66e470b1314d659d8ecede73c63eff
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Thu Sep 24 12:00:26 2020 -0400

    Manually bringing read_satwnd.f90 to its ca5596cd content

commit f5e6a370fae9fe945e08d3a71b23e7513059f4fa
Merge: e629d77d 26a62d00
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Thu Sep 24 11:54:04 2020 -0400

    Merge branch 'feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr' of github.com:ilianagenkova/GSI into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit e629d77db284b9c10ec64a1e7e835923a133d112
Merge: bbbd5fb3 aa09b386
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Thu Sep 24 11:51:08 2020 -0400

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit bbbd5fb358c4dabf09522578736371e490eaa3b4
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Thu Sep 24 11:50:21 2020 -0400

    Commit after reset ca5596cd

commit 26a62d00d5cea0dd2eec4bffeafc2e70ef49b452
Merge: 1fcf9115 aa09b386
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Wed Sep 23 22:32:41 2020 -0400

    Allign with release/gfsda.v16.0.0

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit aa09b386c14c56edbec61d4e5153ce9d2b7fb77f
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Sep 23 18:05:15 2020 +0000

    Issue #2:  various updates in preparation for code delivery

     * scripts/exgdas_enkf_fcst.sh - update name of forecast model script
     * scripts/exglobal_diag.sh - remove GDASRADSTAT dbn_alert
     * src/gsi/correlated_obsmod.F90 - limit diagnostic printout to single task
     * src/ncdiag/ncdw_chaninfo.F90 - comment out diagnostic print
     * src/ncdiag/ncdw_data2d.F90 - comment out diagnostic print

commit 1fcf9115f9e19aafb9936db04992b39b81112480
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Wed Sep 23 11:13:50 2020 -0400

    VIIRS AMVs fix reverted, waiting till v16.*

commit 6587af79ff3647a32e618a97eec84ef8cb870294
Merge: 96996100 30e24ea3
Author: Li Bi <Li.Bi@noaa.gov>
Date:   Tue Sep 22 14:43:02 2020 +0000

    Merge remote-tracking branch 'origin/release/gfsda.v16.0.0.HDOB' into release/gfsda.v16.0.0.HDOB

commit 9699610060f1e09a7ddc94dc991adc6fbea90765
Merge: 3fb6e05d fc8a83fc
Author: Li.Bi@noaa.gov <Li.Bi@noaa.gov>
Date:   Mon Sep 21 20:03:00 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0.HDOB

commit 30e24ea34acf0b934819b30ea03eccb6290340a4
Merge: 3fb6e05d fc8a83fc
Author: Li.Bi@noaa.gov <Li.Bi@noaa.gov>
Date:   Mon Sep 21 20:03:00 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0.HDOB

commit ca5596cd3a4e470e6cf45dfc97d5b75fa0341b08
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Fri Sep 18 18:51:41 2020 -0400

    Comment out the WARNING message for itype=-1

commit c049983022bc3e263410a7834d7e9ce363261580
Merge: f227e5cb fc8a83fc
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Fri Sep 18 18:42:50 2020 -0400

    Add dbn_alert updates ( release/gfsda.v16.0.0 @ fc8a83f )

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit fc8a83fc7cb395a6acd16699d5ed399bbf7ab712
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Sep 18 15:35:01 2020 +0000

    Issue #2:  update dbn_alert after consultation with NCO Dataflow

commit 3fb6e05d2b8a6369c19ed02685bed8626ebd11e9
Merge: b9e7d309 a8a01b86
Author: Li.Bi@noaa.gov <Li.Bi@noaa.gov>
Date:   Fri Sep 18 14:30:19 2020 +0000

    Complete gfsda.v16.0.0.HDOB fix update

commit b9e7d309c1ac20abede1a84dfc29c64025308c8b
Author: Li.Bi@noaa.gov <Li.Bi@noaa.gov>
Date:   Fri Sep 18 13:41:44 2020 +0000

    HDOB GSI code update and script change

commit f227e5cbc29904fe3a4bfc527a434421967e990f
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Thu Sep 17 19:58:11 2020 -0400

    Add a catch for unassigned itype==-1

commit 5e45e270e866b7e1f6f70c2a1d7c655b7f017bcb
Merge: f3b51bcf a8a01b86
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Thu Sep 17 11:36:12 2020 -0400

    Updating with v16 gpsro changes
    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit f3b51bcfcd534b19ca8f6a02a22385ccb4af67a3
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Wed Sep 16 15:34:58 2020 -0400

    Fixed SatID range check for NC005091 winds (VIIRS in new BUFR)

commit c74f67ebfd5d14921b3319c4252acae93053571c
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Wed Sep 16 15:30:02 2020 -0400

    Point /fix to  0c4d01

commit a8a01b8623ac03c727df619231cc623fcc362d96
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Sep 16 18:32:11 2020 +0000

    Issue #2:  update fix/global_convinfo.txt to assmilate metop-c (005) gps; add jacobian check to setupbend

commit 8ae556278194df3f61e58431144962b916f54e79
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Tue Sep 15 14:46:28 2020 -0400

    Add a fix for unassigned itype

commit c63b5ccb69c27165f09d5ac29a203c78601a3684
Merge: dc76ce7c 7c912139
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Tue Sep 15 14:22:35 2020 -0400

    Add NC* subsets for LeoGeo, new bufr EUMETSAT/Metop/AVHRR, and VIIRS winds
    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gfsda.v16.0.0_EUM_MetAVHRR_bufr

commit 7c9121399a135334951adcbaf0015b9e800572d6
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Sep 15 14:32:45 2020 +0000

    Issue #2:  Update DA_GFSv16 fix/global_convinfo.txt to include LeoGeo AMVs (skip reading), add fix/gfsv16_historical/global_convinfo.txt.2020091512

commit 96eaeb99256e139ad7da76fab7aa7ae3ec2a5939
Merge: ad60bd66 56652c2f
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Sep 15 13:20:30 2020 +0000

    Issue #2:  Merge branch 'master' at 56652c2 into release/gfsda.v16.0.0

commit ad60bd66b5bbe369fad8c5b7a5a809452b28390f
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Sat Sep 12 00:08:26 2020 +0000

    Issue #2:  update comments in DA scripts; correct typos in DA job and scripts

commit 73c8e1f8e1abdd00f49298de7abe5f2905cb29bb
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Sep 11 16:42:20 2020 +0000

    Issue #2:  minor updates to enkf

     * src/enkf/gridio_gfs.f90 - initialize variable clip
     * src/enkf/readconvobs.f90 - split combined logical test into separate tests

commit e451bcc58924dd97da0800aa9dd6eb863616d123
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Sep 11 13:37:19 2020 +0000

    Issue #2:  update name of scripts in j-jobs to be consistent with renamed scripts

commit 7b00841a6c6d37d6ff7d62f8ebdc3df9c036bdcb
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Sep 11 13:20:32 2020 +0000

    Issue #2  rename jobs and scripts in accordance with WCOSS Implementation Standards

commit e474cf06de30d4a5fd8ca08a39f0542997caf3da
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Sep 10 13:38:36 2020 +0000

    Issue #2:  add GFS DA v16.0.0 release notes

commit dc76ce7cca601c4fa1c9cb8608b7a76e7d068a9d
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Tue Sep 8 17:42:29 2020 -0400

    Add BUFR 03-10-077 changes for Metop/AVHRR AMVs from NESDIS

commit 25e79078ab0893c119ab02d131e41a7ce44421eb
Author: Iliana Genkova <Iliana.Genkova@noaa.gov>
Date:   Tue Sep 8 13:24:32 2020 -0400

    Add BUFR 03-10-077 changes for EUMETSAT

commit 0bd8d699150cdf9fb0b6f5bf8ac5b243698ee1bb
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Sep 4 20:54:42 2020 +0000

    Issue #2:  add prep_step and missing file checks in accordance with WCOSS Implementation Standards

commit 7580ab99cb2eb7b3e51fff9aa20e2a4c3531798d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Sep 1 19:51:44 2020 +0000

    Issue #2:  Remove redundant and unused variables in accordance with WCOSS Implementation Standards

commit fb50124bb4e12ecfdb3e6dd39d6059ab86eb3fc6
Merge: dce36030 85f38c0e
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Aug 28 19:08:38 2020 +0000

    Issue #2:  Merge branch 'master' at 85f38c0 into release/gfsda.v16.0.0

commit dce36030faa97ba6285a00e57b43b543234dc55d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Aug 28 17:40:50 2020 +0000

    Issue #2:  update variables in jobs/ and scripts/ to be consistent with global-workflow

commit 50bba81acd6df1bcee2272e0df7543d933f0871c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Aug 27 21:26:32 2020 +0000

    Issue #2:  remove APREFIX from DIAG_DIR path

commit 0ac5a57f1772cec3d6dc6d4e1143594f33bb2120
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Aug 27 21:04:57 2020 +0000

    Issue #2:  remove ".ecf" from within monitoring jobs and exscripts as per WCOSS Implementation Standards

commit 9b0fb0e801c66ae2f6c988bc78e750868731ff60
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Aug 27 20:59:37 2020 +0000

    Issue #2:  remove ".ecf" extension from monitoring job exscripts as per WCOSS Implementation Standards

commit 965549156d30195944a8c8c42931e2de27aa061e
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Aug 27 20:35:07 2020 +0000

    Issue #2:  remove ".sms" and ".ecf" from within exscripts as per WCOSS Implementation Standards

commit 5c2e91454ae32ca04448b90ae48a091c6fd03e54
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Aug 27 20:23:18 2020 +0000

    Issue #2:  remove ".ecf" extension from exscripts as per WCOSS Implementation Standards

commit dc5bddb535dca4ce6abde97ea9f21f36fbf62434
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Aug 26 20:42:53 2020 +0000

    Issue #2:  rename script in JGDAS_CHGRES_FORENKF and exglobal_chgres_forenkf_fv3gfs.sh.ecf

commit 02ae2abab10db80dca7451d2fd34c3fd87e78c24
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Aug 26 20:39:06 2020 +0000

    Issue #2:  Rename JGDAS_ENKF_CHGRES and exglobal_enkf_chgres_fv3gfs.sh.ecf as per EE2 guidance

commit df2581cec06ec55fc83175bf2114a051712276b0
Merge: 6724c131 52f9e5cf
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Wed Aug 26 11:33:15 2020 -0400

    Merge pull request #54 from CoryMartin-NOAA/feature/enkf_chgres

    Change gdasechgres namelist for new version of enkf_chgres_recenter_ncio

commit 52f9e5cfc75c40842f2b142b90c727ccce50fdd8
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Tue Aug 25 14:03:01 2020 -0400

    Change gdasechgres namelist for new version of enkf_chgres_recenter_ncio

commit 6724c1315654f259ba4eeeb22fd09f3e9190a58b
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Sat Aug 22 12:36:44 2020 +0000

    Issue #2:  remove incorrect "." from dbn_alert in exglobal_enkf_fcst_fv3gfs.sh.ecf

commit ca4b59c1f596ec3a9c7232ef267e3c4f6f243db6
Merge: 6f58682a 5fd6b23e
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Wed Aug 19 09:12:01 2020 -0400

    Merge pull request #39 from KateFriedman-NOAA/release/gfsda.v16.0.0-restructure

    Release/gfsda.v16.0.0 restructure

commit 5fd6b23e85aacaf348dd3560c3e7b253a6dd7d3a
Merge: 283ab3ac 6f58682a
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Mon Aug 17 17:16:14 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

    * upstream/release/gfsda.v16.0.0:
      Add in some useful print statements

commit 6f58682afd245568e63c730ca6e661552ab8bcf4
Merge: 0c23b60a e8b1459d
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Mon Aug 10 14:47:49 2020 -0400

    Merge pull request #50 from CoryMartin-NOAA/feature/calcanl_print

    Add in some useful print statements

commit e8b1459de5df22a9d97a0a028618c43364dcf0fa
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Aug 10 12:50:43 2020 -0400

    Add in some useful print statements

    Add print statements if increment or ensemble guess files are missing but IAUFHRS says it should be there.

commit 283ab3acb4a5f34a869a8eba7349b9457515ddc0
Merge: b53db5de 0c23b60a
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jul 29 14:31:24 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

commit 0c23b60aec3848149b9d6ae27a77906c85a6cabd
Merge: 9fca7b3c 13366a1a
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Tue Jul 28 10:29:02 2020 -0400

    Merge pull request #43 from NOAA-EMC/master

    Issue #2:  Update release/gfsda.v16.0.0 with master PR #32

commit b53db5deac8c98418798b72041601b1936e48cb6
Merge: aff4da8b 9fca7b3c
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 23 13:35:21 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

commit aff4da8b604fde8918ca68bed1fea8c3ff069c0b
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 23 13:34:11 2020 +0000

    Small text fix in JGDAS_VMINMON

commit 9fca7b3c7b8301f60a1860703e1d104b7689d97e
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jul 23 11:09:23 2020 +0000

    Issue #2:  refactor CFP in scripts to better support LSF and SLURM

commit 263c10aa1541c2913c0dee5ed48eeeb33b0fb5fc
Merge: 15f35da2 3eef0732
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jul 22 15:23:57 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

commit 3eef073293bcfa9c641bde3c5549621dbebea0a0
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jul 21 18:27:48 2020 +0000

    Issue #2:  remove obsolete modulefiles/4.7.4

commit 15f35da215d2f1d59784e5bc5b2256fa02587d64
Merge: f6bc0f6a 29bd66fd
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jul 20 14:39:52 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into release/gfsda.v16.0.0-restructure

commit 29bd66fd0c8e54783c25ee863fcf2575678ebbe9
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jul 20 14:08:16 2020 +0000

    Issue #2:  update modulefile.ProdGSI.wcoss_c to use netcdf/4.7.4 and parallel hf5

commit e0327d3f6f84a81349ab5bd1291b5380f846040c
Merge: 72b4c012 adbdbdd6
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Mon Jul 20 10:00:11 2020 -0400

    Merge pull request #38 from kgerheiser/wcoss-fixed-cmake-build

    Issue #2:  merge kgerheiser/wcoss-fixed-cmake-build into base repo release/gfsda.v16.0.0.

commit f6bc0f6a010b0606bf6003f14872fb3ddc80f96f
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 16 17:46:58 2020 +0000

    Add  variable to JJOB and ex scripts for new atmos subdirectory

commit adbdbdd66dbd139f6f477a7a9efbcd0df58d1de2
Author: kgerheiser <kyle.gerheiser@noaa.gov>
Date:   Thu Jul 16 16:48:35 2020 +0000

    Fixes for link order and missing libraries

commit 72b4c012db4b82b1fd6bf9257bb8075b9f2b2e86
Merge: c4f6dc19 6e815576
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Wed Jul 15 11:24:49 2020 -0400

    Merge pull request #36 from EdwardSafford-NOAA/release/gfsda.v16.0.0

    Add fixes to OznMon.

commit 6e815576f24d22a62c3bd69065dcc52af4a6af03
Author: Edward.Safford <edward.safford@noaa.gov>
Date:   Wed Jul 15 14:13:42 2020 +0000

    Add fixes to OznMon.

commit 422b62c750d02141a27f9b796ebd39dfc855f30c
Author: kgerheiser <kyle.gerheiser@noaa.gov>
Date:   Tue Jul 14 21:10:35 2020 +0000

    Fixes for GSI so that it can build on WCOSS Cray

commit c4f6dc19b79f4e43052b97bfd1a3e226bbb0aeeb
Merge: 19bcabc3 06b99b7e
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Tue Jul 14 15:35:53 2020 -0400

    Merge pull request #35 from CoryMartin-NOAA/bugfix/calcanl

    Bugfix for incorrect function call when IAU is off

commit 06b99b7ef8483ab2b247110afe1a056e72ec8a15
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Tue Jul 14 14:55:53 2020 -0400

    Bugfix for incorrect function call when IAU is off

commit 19bcabc3cb48fac7e57702d5a5080a5a8c90a4ea
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jul 9 14:26:52 2020 -0500

    Issue #2:  update modulefiles/modulefile.ProdGSI.orion to load w3emc/2.4.0

commit a0ef7d3d582b1092a8915895d58683abece0baee
Merge: bbdaf21b d74bc03b
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jul 1 16:58:55 2020 +0000

    Issue #2:  merge branch 'master' at d74bc03 into release/gfsda.v16.0.0

commit bbdaf21b3f573229ce8f583df99940e1c3a9d40d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jul 1 13:41:02 2020 +0000

    Issue #2:  replace ERROR with WARNING in tcv_mod.f90 runtime printout

commit a1f83ecb47e745cd1d9a1dd00c8620c1cf3bdaa9
Merge: 947d7843 ef6f4746
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Thu Jun 18 15:54:03 2020 -0400

    Merge pull request #21 from CoryMartin-NOAA/feature/gdaschgres

    Feature/gdaschgres

commit 947d7843a37af36d804c8e4203746e1bfb740dc0
Merge: 63d9f196 fcec2a92
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 17 18:12:36 2020 +0000

    Issue #2:  merge branch 'master' at fcec2a9 into release/gfsda.v16.0.0

commit ef6f474692e572e80ca6702ba41128730fce672d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jun 16 20:24:05 2020 +0000

    Issue NOAA-EMC#8:  rename JGLOBAL_CHGRESFCST and exglobal_chgresfcst_fv3gfs.sh.ecf

commit 63d9f196b9f8d9810d3aae20b285b668c40e1437
Merge: e9e717af 93cd14b9
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Jun 12 18:08:09 2020 +0000

    Issue #2:  merge branch 'master' at 93cd14b into release/gfsda.v16.0.0

commit e15074e1370266b18cfb8d35a20adca82e6b4c4a
Merge: ed9eab45 e9e717af
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Jun 11 20:13:16 2020 +0000

    Merge remote-tracking branch 'upstream/release/gfsda.v16.0.0' into feature/gdaschgres

commit e9e717afc203e4b25dcf7570a3ba0443a04a42d3
Merge: 54e178f5 58354d02
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Thu Jun 11 14:45:56 2020 -0400

    Merge pull request #11 from CoryMartin-NOAA/bugfix/contrib_hera

    Hotfix to allow for contrib modules to still load on Hera

commit 58354d02fe441b3e3ef4a9962fd6038c47122cad
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Jun 11 18:36:02 2020 +0000

    Hotfix to allow for contrib modules to still load on Hera after change from admins

commit ed9eab45d962070eceb073b5e51675f9cd40eabe
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Jun 11 18:14:21 2020 +0000

    Fix Hera modulefile for contrib changes

commit 685589834199fb10e5eff13c752771e6d3840c0a
Merge: 7d1b2948 54e178f5
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 21:18:22 2020 +0000

    Merge branch 'release/gfsda.v16.0.0' into feature/gdaschgres

commit 7d1b29488b3c354f1cdcea0094e5713136a092d1
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 20:49:00 2020 +0000

    Changes from debugging addition of chgresfcst on hera

commit f828de84bad1eda9191aac3aa1fbd2756f4fea74
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Tue Jun 9 16:45:27 2020 -0400

    Renamed script; created j-job for chgresfcst

commit 99350edc1a9427d3bcf80d6c4fd1e4478fb275e0
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Tue Jun 9 16:34:55 2020 -0400

    First draft of exglobal_chgres_fcst.sh.ecf

commit dd969e633930ac8d9e1fafb6a55bce65dea3078c
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Jun 8 17:36:55 2020 -0400

    change ln -s print

commit 3df7c5b28052b5ac805d1e4a412302371fd3f09c
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Jun 8 17:33:31 2020 -0400

    Fix issue with indentation in getncdimlens

commit 60a65fe533c7fe54a8c0019716b8b83dfce1a66d
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Jun 8 17:22:10 2020 -0400

    fix missing import os

commit f91866710b059aa2cebac2e130ec433e33353c1c
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Jun 8 17:04:04 2020 -0400

    Fix some indentation in calcanl_gfs.py

commit c12c96298249662ae1d7c4ac9d9cbfb518ac2019
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Jun 8 15:37:13 2020 -0400

    Add print to gsi_utils; 4 spaces for calcanl_gfs

    Changed to 4 spaces instead of 2 to conform to Python coding norms for calcanl_gfs.py; removed capability to run chgres in calcanl_gfs.py; add print statements to gsi_utils for link, copy, mkdir; create chgres ex script from analcalc

commit 54e178f59df7e608929048050577f511c4aa147a
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 3 20:02:45 2020 +0000

    Issue #2:  updates to streamline and add flexibility

    * jobs/JGLOBAL_ENKF_ANALDIAG - source config.analdiag

    * scripts/exglobal_analdiag_fv3gfs.sh.ecf - add option to remove DIAG_DIR

    * src/gsi/obsmod.F90 - add -p to mkdir command

commit b3c6b668272795589d0a9f06d5d402a9fb3f0011
Merge: 6a9b5244 c489ff43
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu May 28 17:48:06 2020 +0000

    Vlab issue #65376:  merge branch 'master' at commit:fa0e592c into feature/parallel_ncio

commit 6a9b5244528767a19e891b59725c079b6d5a4006
Merge: 10741d5b 663f28ed
Author: Edward.Safford <edward.safford@noaa.gov>
Date:   Tue May 26 13:36:17 2020 +0000

    Merge branch 'feature/parallel_ncio' of ssh://vlab.ncep.noaa.gov:29418/ProdGSI into feature/parallel_ncio

commit 10741d5bf39bd2eeae23a3ec436515a5702d55f3
Author: Edward.Safford <edward.safford@noaa.gov>
Date:   Tue May 26 13:31:06 2020 +0000

    Update setupt.f90 adding missing
    Data_Vertical_Velocity field to NetCDF
    formatted diagnostic files.

    Change-Id: Ibe792738deb071e3e8b99118f395a8ad1bf21a61

commit 663f28ed10cd77f6016c729d2d013692144ba5d6
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 13:16:33 2020 +0000

    Vlab issue #65376: update to fix to point at DA_GFSv16 at commit:f0f7447f

     * global_convinfo.txt - assimilate COSMIC-2 and and monitor commercial GNSSRO
     * gfsv16_historical/global_satinfo.txt.2020052612 - assimilate COSMIC-2 and and monitor commercial GNSSRO
     * gfsv16_historical/global_satinfo.txt.2019021900 - update CrIS H2O observation and gross errors
     * gfsv16_historical/global_satinfo.txt.2019110706 - update CrIS H2O observation and gross errors
     * gfsv16_historical/global_satinfo.txt.2020022012 - update CrIS H2O observation and gross errors

commit 16bfc145ce5e592cc4eb0410da2e0f5e402973e0
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Sun May 24 13:10:55 2020 +0000

    Vlab issue #65376:  add logic to optionally compress diagnostic file created from a single task

commit 54cfbdb4dbf5b3fdf987b9fd679fca044b426586
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu May 21 23:35:40 2020 +0000

    Vlab issue #65376:  updates to process COSMIC-2 and commercial GNSSRO

commit 16fae83675238fde64a846e9cb69d512097b5d30
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu May 21 11:03:25 2020 +0000

    Vlab issue #65376:  additional source code updates from code review 21684, correct exglobal_analdiag_fv3gfs.sh.ecf bug

commit d73ad90b0d30898d71f61d5aa36fddce2474c8fe
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed May 20 00:19:23 2020 +0000

     Vlab issue #65376:  correct typo in scripts/exglobal_analysis_fv3gfs.sh.ecf

commit d9181d64819865edbcea13525a64a39d5c9491bb
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 19 22:46:30 2020 +0000

    Vlab issue #65376:  updates for code review 21684 and GFS v16 DA

commit be0a5c421b05421c02bb041e4266e32ea814ddb1
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Fri May 8 15:05:36 2020 +0000

    update interp_inc to use ipolatev for interpolation of u,v increments

commit 0038c050cc0b64079e18de46c0671b36706b0e71
Merge: 29c838b3 1b95607d
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri May 8 15:03:05 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 29c838b3f9f1d8ad26ce4447ba3eb15faf72089f
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri May 8 15:03:01 2020 +0000

    Add in print of netCDF filename for errors to module_fv3gfs_ncio

commit 1b95607d5cac2987aa1573114fd75f1a1988b33d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri May 8 11:35:23 2020 +0000

    Vlab issue #65376:  correct dpres latitude index in write_atm (netcdf analysis)

commit c520b5673b4e82e7f00800844735e74e3efac801
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Apr 27 13:37:24 2020 +0000

    Vlab issue #65376:  add logic to check for and, if needed, remove DIAG_DIR prior to GSIEXEC executation

commit cc69dcfa90b8e55a41d862d5259053992a272fb6
Merge: 8ef7fd0a 0938cb5f
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Apr 23 16:56:07 2020 +0000

    Vlab issue #65376:  Merge branch 'feature/enkf_increment' at commit:620fa23c into feature/parallel_ncio

commit 8ef7fd0add5a3a5e668383df6356ca6c66222a71
Author: Michael Lueken <michael.lueken@noaa.gov>
Date:   Thu Apr 23 16:41:35 2020 +0000

    VLab issue #65376: Address debug run issue for netdf_fv3_regional configuration.

commit 0938cb5f10ddb7b5bb0938f96c47c4a2855c40ca
Merge: 8b7c79e3 0b2c74b5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Apr 23 14:51:08 2020 +0000

    Merge branch 'feature/parallel_ncio' at commit:63fac121 into feature/enkf_increment

commit 8b7c79e3ff60fcbbefb55d80727ef23c7c828979
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Thu Apr 23 13:23:34 2020 +0000

    add barrier to prevent race condition on shared memory window

commit 8940866914db6025604175d0a4e8fe26c1ae0788
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Apr 22 16:03:02 2020 +0000

    Update two exglobal_enkf scripts:

     * exglobal_enkf_recenter_fv3gfs.sh.ecf - check for existence of ensemble mean file prior to attempting to create file

     * exglobal_enkf_update_fv3gfs.sh.ecf - remove scripting to run ENKFEXEC task 0 on a single node

commit 0b2c74b5a4b827efd287022cd6dedca87a068686
Merge: 6dcc3003 005f50b1
Author: edward.safford <edward.safford@noaa.gov>
Date:   Wed Apr 22 15:55:47 2020 +0000

    Merge branch 'feature/parallel_ncio'
    of ssh://vlab.ncep.noaa.gov:29418/ProdGSI
    into feature/parallel_ncio

commit 6dcc300385e795199cd91836f3b028be7b33c8a8
Author: edward.safford <edward.safford@noaa.gov>
Date:   Wed Apr 22 15:54:22 2020 +0000

    Correct OznMon's read_diag.f90 to correctly
    handle levels.

    Change-Id: I55b89338857feacf14f9e60865e67b92a9fa280b

commit 005f50b146c0146667fbdf21421a35ccc4daaa11
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Apr 22 14:58:20 2020 +0000

    VLab issue #68133 - bugfix for parallel increment write on Hera/Orion

commit fd95cc9a547ff7886740d1e8d5ea3ec5be00c009
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Tue Apr 21 22:28:06 2020 +0000

    make sure shared memory window size is of type MPI_ADDRESS_KIND and > 0.

commit 987b7e765a7622496f5fadb0faf7232e983a26ea
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Apr 21 10:40:24 2020 +0000

    Vlab issue #65376:  extend parallel processing of diagnostic files to slurm

commit c4cc8ea0b63a5e3276170e7a040e09022af2e370
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Mon Apr 20 20:51:02 2020 +0000

    revert changes from a172284a2311da2352ea10f8c99663d216ba82d3 (use of MPI_win_lock/unlock)

commit 1721c87c9f86191fa756cb731a90571853e66b74
Merge: 0a565f3f c52be726
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Mon Apr 20 14:28:33 2020 +0000

    Merge branch 'feature/incr_metadata' into feature/enkf_increment

commit f014bac2125b870fca754bdd6de61fc81fb8fd05
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Apr 20 11:20:31 2020 +0000

    Vlab issue #65376:  add analcalc and analdiag to list of config files to source in their respective j-jobs

commit 0a565f3ff06595d7fa8fe548e5e1835adb0ef35f
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Sat Apr 18 01:40:38 2020 +0000

    remove MPI3FLAG - no longer used

commit 6514f747f4b3e7b3c371b2ba91fc372e97495f85
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Apr 16 11:28:15 2020 +0000

     Vlab issue #65376:  code review updates - (1) remove unused variables, (2) address debug run issues

commit fd91fe89d2d01f80a344dd3f0c71eaf8987a2966
Merge: a172284a 05e345de
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Mon Apr 13 20:03:02 2020 +0000

    Merge branch 'feature/enkf_increment' of gerrit:ProdGSI into feature/enkf_increment

commit a172284a2311da2352ea10f8c99663d216ba82d3
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Mon Apr 13 20:01:57 2020 +0000

    put lock around initialization of shared memory window

commit 5e870e8fd87c1be2fe470a6684f04e34a610fd86
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Mon Apr 13 20:01:38 2020 +0000

    make sure arrays are allocated before deallocating them

commit 05e345de7198c16bfc611948395d3b511fc9e13b
Merge: cf514cba 3a60c3cc
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Apr 13 17:28:48 2020 +0000

    Merge branch feature/parallel_ncio at commit:0676a17d into feature/enkf_increment

commit cf514cba84469ba38492606cb75a42cde3a72f98
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Sun Apr 12 18:40:43 2020 +0000

    remove MPI3 CPPFLAG (now mandatory)

commit ade6fc8232a6cabd72f8d00745a2e11177f1ac3b
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Sat Apr 11 19:51:58 2020 +0000

    revert fix link

commit 8681cd9ec8ad2d4588e62901c9d97355a96ef8e9
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Sat Apr 11 16:35:31 2020 +0000

    revert libsrc hash

commit 0af7cf39ba50a4ae21ff09d74dd4d1b706cb6269
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Sat Apr 11 16:33:09 2020 +0000

    remove extra endif

commit 9b5fcf9d56df6a082ba252d8ba0982a698b5b45c
Author: jswhit2 <Jeffrey.S.Whitaker@noaa.gov>
Date:   Sat Apr 11 15:57:33 2020 +0000

    optimizations for creating and distributing obs prior ensemble

commit 3a60c3cc4a1d8fef62b7128f2f618deda4b20d30
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Apr 10 16:09:16 2020 -0500

    Vlab issue #65376:  add missing cmake/Modules/platforms/Orion.cmake

commit af891f1566b3c51504dcc42eb9663b15b0d06659
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Apr 10 15:18:01 2020 -0500

    Vlab issue #65376:  add Orion to cmake files

commit 1177fca6911d53c35040cebd1102b99c960b84cd
Merge: f11ca530 cef3a3e6
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Apr 10 15:48:18 2020 +0000

    Merge branch feature/parallel_ncio at commit:c7aab51b into feature/enkf_increment

commit cef3a3e6ccd477dea5885b1d48450773065c93aa
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Fri Apr 10 10:36:31 2020 -0500

    Add 'stop 99' so netCDF errors will return non-zero exits

commit f11ca53017fa1d44f20f00fc798c6c825e03c4b4
Merge: 748ad023 ff1e0320
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Apr 10 13:54:59 2020 +0000

    Merge branch feature/parallel_ncio at commit:e9669ac5 into feature/enkf_increment

commit ff1e0320a1d673882977a6a76f77275eb83d0d8b
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Apr 9 20:17:06 2020 +0000

    Vlab issue #65376:  remove unnecessary lines from scripts/exglobal_enkf_recenter_fv3gfs.sh.ecf

commit 5b9bc119e1b1916cf4fe3320e1df415ea8b76db1
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Apr 9 18:13:52 2020 +0000

    Vlab issue #65376: updates in preparation for GFS v15.2.12

     * scripts/exglobal_analysis_fv3gfs.sh.ecf - update ESCRISFS & CRISFSDB defaults and uncomment links

     * src/read_cris.f90 - changes to process new data feed (backward compatible with previous feed)

commit a84dc26a9e47714d7310a1b7dbe33249a15aa0f3
Merge: 3f2b353a 70bc69a5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Apr 8 21:09:02 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 70bc69a5486e9ecb0ea8cb23b075ca8101ff5a74
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Apr 8 21:05:38 2020 +0000

    Bugfix for calcanl_gfs.py to work on either Python2 or Python3 for converting slurm nodelists to Python lists

commit 3f2b353a35d8a03a1354f151d0dd2a72eeeefbf7
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Apr 8 21:05:22 2020 +0000

    Vlab issue #76037:  update DA_GFSv16 fix to be consistent with gfs.v15.2.11

    * fix/gfsv16_historical/global_convinfo.txt.2020040718 - same as global_convinfo.txt below

    * fix/gfsv16_historical/prepobs_errtable.global.2020040718 - same as prepobs_errtable.global below

    * fix/global_convinfo.txt - assimilate 135/235 (Candian AMDAR)

    * fix/prepobs_errtable.global - set observation errors for 135/235

commit fbc3503d2ccd8531db98d1eb8d6b984008f38b35
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Apr 8 11:13:49 2020 -0500

    Vlab issue #65376:  use /home/cmartin/opt/modulefiles to load anaconda/anaconda3-2020.04.02 in modulefile.ProdGSI.orion

commit 3baa0f64cf2fe5573e72a5cace9a3e5cb97838c2
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Apr 8 10:29:23 2020 -0500

    Vlab issue #65376:  update modulefiles/modulefile.ProdGSI.orion to load anaconda/anaconda3-2020.04.02

commit 01d59c9e6a8342c4af0257ece5bbce61844ec6fc
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Apr 6 15:54:14 2020 +0000

    Vlab issue #65376:  add modulefile for orion, add orion to build_all_cmake.sh

commit 970582ce1201233c0f95f4a7f6a8ea45b220b0a1
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Apr 3 19:39:11 2020 +0000

    Vlab issue #65376:  change hsst from 600 to 100 in L127 global_berror files

commit ea6f70ff3a870353e9805b1748f5fdb2aeb82034
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Apr 1 22:51:36 2020 +0000

    Vlab issue #65376:  change declaration and printout of variable filename for FV3CAM_SAR

commit c52be726f78ee00fe5e4bf1a5ac170ffa6d0a9be
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Apr 1 21:18:35 2020 +0000

    #76442 - added additional metadata to GSI/EnKF increment files to know analysis/valid time

commit 748ad023f79ff517e70b583bace9dab930ca3c21
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Apr 1 16:25:57 2020 +0000

    #69740 fixed bug in calc_increment_ens_ncio that caused liq_wat_inc to not zero out; tested

commit 96ffa45f585833fb1a7de7a5b8bb93262b16155d
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Apr 1 15:55:52 2020 +0000

    #69740 fixed bug in calc_increment_ens_ncio that caused liq_wat_inc to not zero out

commit d45f6f8268f370abd463eb8985597a934da1448e
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Tue Mar 31 18:29:13 2020 +0000

    #76442 - add in psinc hPa to Pa conversion

commit 2f489523611686e101d5fd59af0ab46f0bef01e4
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Mar 31 16:20:02 2020 +0000

    Vlab issue #65376:  script and source code updates

     scripts/exglobal_analdiag_fv3gfs.sh.ecf - add safeguard to prevent multiple writes to diagnostic files

     src/enkf/gridio_gfs.f90 - use correct units for pressure increment in delz increment computation

commit fdbdac0d12b602d7084a847c2347ff2f9e48a3a7
Merge: 338a7d96 b4638a3b
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Tue Mar 31 12:57:29 2020 +0000

    Merge branch 'master' into feature/enkf_increment

commit 338a7d96f32f727bc47c3b25d7f5880fa23c7c55
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Mon Mar 30 20:39:41 2020 +0000

    #76442 - fixed compile errors

commit bdc6b0b5b4ee2786d8cdcb9252f56b0f57b19367
Merge: da3e28a0 4a831215
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Mon Mar 30 20:26:32 2020 +0000

    Merge branch 'feature/enkf_increment' of gerrit:ProdGSI into feature/enkf_increment

commit 4a8312159f5aeff1b814a9691f74931bb4113eaf
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Mar 30 16:26:26 2020 -0400

    #76442 - removed unused vars from gridio_gfs.f90

commit d5433e4274a8db6ae854e4095f26d2a8163b4d91
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Mar 30 16:17:57 2020 -0400

    #76442 - added in serial writeincrement to enkf; fixed bugs in enkf/recentersigp; need to confirm it compiles, then test

commit 392e2fd1f437b5e5a3600cd1afcda96da5c12208
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Mar 30 12:23:18 2020 -0400

     #76442 - add zero increment option for recentering utility; added it to eupd/ecen scripts

commit 24da418c1012553f082fe429bbb43a747f9fb68f
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Fri Mar 27 17:29:21 2020 -0400

    Commented out code that isn't finished for recentersigp

commit 77b2df844c1e7064d2dd2fca2c1f6325c9aa7b18
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 27 21:14:45 2020 +0000

    #76442 - add zero increment option for EnKF, need to finish adding it for recenter utility

commit f7d098b6ce801df5679061d8cfbe0a9bac53b945
Merge: b24cbdf9 b4638a3b
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Mar 27 19:19:44 2020 +0000

    Vlab issue #65376: merge branch 'master' at commit:7b74864b into feature/parallel_ncio

commit 54839e354dfd026e95a94e15555142dd6b55585a
Merge: b764919f 41902c3c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 27 18:13:20 2020 +0000

    Merge branch 'feature/enkf_increment' of gerrit:ProdGSI into feature/enkf_increment

commit b764919f2ca8e0f386a2a67426aec342890e3e1d
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 27 18:12:41 2020 +0000

    #76442 - add forced zero out to recentersigp for output var

commit 41902c3c592f82b563e8508829cdc210e0905a88
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Mar 27 14:55:46 2020 +0000

    Add RECENTER_ENKF and PREFIX_ATMINC to exglobal_enkf_fcst_fv3gfs.sh.ecf

commit 15e5783ddec5c7ddd9e2aa4ff244752384db1960
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Mar 26 20:02:57 2020 +0000

    #76442 - recentersigp and getsigensmeanp_smooth run and there are output files, need to see if they are consistent with before

commit b24cbdf90110190503b20a9d7d0b06ebf494e025
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Mar 26 00:43:17 2020 +0000

    Vlab issue #65376:  update namelist and script for global_fv3_4denvar_C192 regression test

commit a9a146852df991979eb2c172fe4376bd60fced1c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Mar 25 20:13:12 2020 +0000

    #76442 - fixes to get it to compile

commit 7137f58670ca34b6aa4a768927676ff8873906cf
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Wed Mar 25 16:00:14 2020 -0400

    #76442 - initial modifications to recentersigp to support recentering increment; commit to test on wcoss

commit bdb159ffc4fa05da81430f2ca09aa1c868b4f77c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Mar 25 15:16:40 2020 +0000

    Vlab issue #65376:  add MKL_NUM_THREADS=1 to global_fv3_4denvar regression tests; add global_fv3_4denvar_C192 regression test

commit 45ae1bc6144e8cb2f9ebcb13d1cc3a609db9b4e7
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Wed Mar 25 10:58:18 2020 -0400

     #76442 - make changes to ecen script to support increment recentering

commit b95281d4b4698f5fde26e58790c0a30dec48b80c
Merge: 441acea9 871e9c98
Author: edward.safford <edward.safford@noaa.gov>
Date:   Wed Mar 25 13:25:23 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 441acea93361e55ae660b86faa45c933c7cf8787
Author: edward.safford <edward.safford@noaa.gov>
Date:   Wed Mar 25 13:23:58 2020 +0000

    Update OznMon summary plot
    script to avoid trying to plot
    single level sources.

commit 60c174b5c91f991ca18a74ab77bec30f2943918a
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Tue Mar 24 16:55:06 2020 -0400

    #76442 - make changes to getsigensmeanp_smooth to support netCDF increment files; need to test

commit 871e9c989309e8af3f56bcace10ea3bd170d7d35
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Mar 24 16:08:30 2020 +0000

    Vlab issue #65376:  update code related to ozone usage flags

commit 44a3627e7551a3b936b16d54d8fc4d6c1c08ffda
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Mon Mar 23 20:26:28 2020 +0000

    #76442 - use variable DO_CALC_INCREMENT in the eupd script

commit 1e608049ca8d21f8a7b7f427e0027a08e346dfb2
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Mar 23 15:19:58 2020 -0400

    #76442 - add symbolic link of increment, not analysis, in eupd when using write_fv3_incr=true

commit da3e28a0f99d1f4208f9359e7f6ca173f658de5b
Merge: cdd256f8 5e4a0194
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Mon Mar 23 13:14:41 2020 +0000

    Merge branch 'feature/parallel_ncio' into feature/enkf_increment

commit cdd256f816dd791e32b32c1f772566471d02da09
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Mon Mar 23 08:53:38 2020 -0400

    #76442 - fixed some precision issues with variables, need to test; hopefully I can do so on Hera

commit 5910347738e5587fb29a885366d74b49d0e22cd1
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 20 21:29:15 2020 +0000

    #76442 - delz is now worse than before; but change of r_kind to r_single fixed some vars completely; look into this more

commit 5e4a0194e5b188e69b3bbf1603a9dc246b4f5471
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Mar 20 20:56:17 2020 +0000

    Vlab issue #65376:  update netcdf, hdf5, and crtm modules for wcoss_c

commit 9b0647927b2bf7edd9c15474129a8b9063ea0940
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 20 19:52:13 2020 +0000

    #76442 - bugfix for delz pressure - psges vs psanl

commit 7060fbc53445dedad21efe8db0dc1e79839be21c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 20 19:41:20 2020 +0000

    #76442 - bugfix for delz pressure - units hPa vs Pa

commit 3f60f43ab4d94fb17357efa0ddad11637fd38ecb
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 20 19:06:43 2020 +0000

    #76442 - fixed issues with delz,t,sphum increment; differences are minimal (<0.1%)

commit 20d9170a7935d33676ca9d256bb299e642642356
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Mar 20 14:58:02 2020 +0000

    Vlab issue #65376:  remove unused variables

commit 192954c155c08e4b9511d2fb4d81d94d5f7ce254
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Fri Mar 20 10:07:50 2020 -0400

    #76442 - read lat/long from guess

commit 1caf42cd9a31b4d6de460bbf8700a8133c689502
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Fri Mar 20 08:51:18 2020 -0400

    #76442 - fix allocatable array bug

commit 7df2559e984f63316d2fbaa4e06a857b875f6bdd
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Fri Mar 20 08:35:47 2020 -0400

    #76442 - flip latitudes for all 2/3d vars

commit 1579415d29a36473d243d28206a763fc6ce9bd21
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 17:22:17 2020 -0400

    #76442 - add write of lat/lon to increment file

commit 9e6c2ad27beb9f178143b713214c70e81f41529f
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 16:01:55 2020 -0400

    #76442 - bugfix for filename of guess for writeincrement

commit f33202297bd9cf9d2c9f2f999335c768e564e547
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 15:28:38 2020 -0400

    #76442 - bugfix for namelist variable

commit b818ccb1fce0368de4002ae092d6586318473bf3
Merge: 9400abec 294fbb19
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Mar 19 19:17:58 2020 +0000

    Vlab issue #65376::  merge branch 'master' at commit:7b52464f into feature/parallel_ncio

commit 63b7a9bc47fdca128c31e62bb04c21ef5c34123f
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 14:24:16 2020 -0400

    #76442 - bugfix for subroutine 'use'

commit b2548d388c495078778dc2e398176c05ba00b875
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 14:18:44 2020 -0400

    #76442 - bugfix for namelist option 'use'

commit a2ed64fc22044764dcfa7ef883d616fa026f53ba
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 14:12:06 2020 -0400

    #76442 - add namelist option for writing increment when parallel IO is true

commit 76442964c30bdc0ee99a6a508e0dfbfde03e67d3
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 13:58:04 2020 -0400

    #76442 change increment to be r_kind for copygrddata

commit 7da5bc5b3b32727dd0162c83e01ef2de4a0918c9
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 13:53:26 2020 -0400

    #76442 add copygrddata to increment write

commit 6271ed403db038b18d23828df5362b527e515531
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 13:47:56 2020 -0400

    #76442 fix psges; add ak/bk

commit c605b477283caaf000e406a9aa8b7432b9f2c668
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 13:42:12 2020 -0400

    #76442 fix even more compile-time errors

commit 9cff1fb8eb2f6d37f3b6320fb0d45b6dd1d99701
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 13:35:21 2020 -0400

    #76442 fix some more compile-time errors

commit 5bebfc825099a29432f8eaf4b4505533a40b8747
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 13:29:45 2020 -0400

    #76442 fix some compile-time errors

commit d78992fb1b8552e7c39d5f333326fa07d86ae40d
Author: Cory Martin <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 13:13:24 2020 -0400

    #76442 commit to switch to WCOSS for compile/test/debug

commit 8adb4eeaa4f849b16e989a0a5c43f309c68f5d31
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 14:43:17 2020 +0000

    #76442 commit to switch to personal machine so I don't have to edit source on VPN

commit dd5df327fd788a32d8cd4a213d392c30e4a9dafa
Merge: 261d282b d7ca0b26
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Mar 19 13:13:22 2020 +0000

    Merge branch 'feature/enkf_parallel' into feature/enkf_increment

commit d7ca0b26baa2a2e0bcd7d6debf16f715c0f920c9
Merge: d58361bb 9400abec
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Mar 18 21:14:04 2020 +0000

    Merge branch 'feature/parallel_ncio' into feature/enkf_parallel

commit d58361bbdda307143cb622b6123846d78791107a
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Mar 18 21:13:26 2020 +0000

    #72540 - reworked EnKF parallel read again; this time it seems that there are no differences when using nccmp; need to test at higher resolution

commit 9400abec2c9721b220cf5ebece18ab67563a79c9
Author: edward.safford <edward.safford@noaa.gov>
Date:   Tue Mar 17 15:46:58 2020 +0000

    Update gdas_radmon_satype.txt file.

    Change-Id: I31e0775bba7c04b656d15751fcd1fd6146deb60d

commit 2a1f1d7a04b6b7ce19c4ae7598376594acae0a01
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Mar 16 10:16:42 2020 +0000

    Vlab issue #65376: DA workflow updates for GFS v16 (does not change results)

     * jobs/JGLOBAL_ANALCALC - job to peform non-diagnostic file tasks following anal (new)

     * jobs/JGLOBAL_ANALDIAG - job to create diagnostic files following anal (new)

     * jobs/JGLOBAL_ENKF_ANALDIAG - job to create diagnostic files following eobs (new)

     * scripts/exglobal_analcalc_fv3gfs.sh.ecf - complete non-diagnostic file tasks after GSI completes (new)

     * scripts/exglobal_analdiag_fv3gfs.sh.ecf - create diagnostic files after GSI completes (new)

     * scripts/exglobal_analysis_fv3gfs.sh.ecf - move post-analysis calculations and diagnostic file creation to new exglobal_anal scripts

commit 1a6502f65dd03851f8dc0ad3ee050e262cb957cc
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 13 20:47:46 2020 +0000

    #72540 - removed debug print

commit 217d6bfbe6fded15f8690572d075145f52d63a58
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 13 20:39:28 2020 +0000

    #72540 - reworked EnKF parallel read; write was fine but read resulted in small differences from original results; still need to test but saving for backup purposes now

commit ce0842a998a0700bc18b0d21b1e4208f26cb6450
Author: edward.safford <edward.safford@noaa.gov>
Date:   Fri Mar 13 16:12:32 2020 +0000

    Implement OznMon fix for iuse_flag
    from NetCDF formatted diag files.
    Update historic values file to add
    ompsnp_npp and ompstc8_npp data.

    Change-Id: Ia6aa1607a2f794ed10b27aaeb0cda536ff5c2039

commit 261d282b469f698763ad5b57de53375d40a19aba
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Mar 12 20:56:18 2020 +0000

    End of day save; added u,v,delp increment write to EnKF code, still a work in progress

commit 061527d0e7e758f008203bf5645183211b957a20
Merge: 9ee6dc9e 6f7a9ff6
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Mar 11 20:12:01 2020 +0000

    Merge branch 'feature/parallel_ncio' into feature/enkf_parallel

commit 9ee6dc9ef4e48db1e61bdcc8ba9274cd454ee334
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Mar 11 20:11:25 2020 +0000

    #72540 - working version of EnKF parallel read/write, nccmp shows 3 randomly selected anl files are virtually identical (small diffs for spfh); need to test at high res for timing info

commit d2332c616750ba394c9ccd33436d38a50939fb5e
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Tue Mar 10 21:05:05 2020 +0000

    End of day commit; code runs, but double/triple check vert coord krev, etc.; also ps std dev huge, why? related to vert coord issues perhsps?

commit 80e4e1180ab08a97585abaf3de7763bbf44456e4
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Mon Mar 9 21:16:30 2020 +0000

    add some debug prints

commit ff87d1acc7b65e0acff6cc1af28c7768f578877f
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Mon Mar 9 20:58:32 2020 +0000

    End of day save before parallel production test; parallel write for EnKF is hanging, must be MPI related, need to debug on Hera tomorrow

commit 6f7a9ff62afdea8e056dd2de9207ec736a6a6cbb
Author: edward.safford <edward.safford@noaa.gov>
Date:   Mon Mar 9 14:37:02 2020 +0000

    Remove ompslp_npp from OznMon's
    expected sat/instrument list.

    Change-Id: I5def2a0fb8569d150fad13379a8bd9b94909533e

commit 131a9762713e79a8fcc76f2649ffab0da1e46fe5
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Fri Mar 6 21:03:01 2020 +0000

    Code compiles for EnKF parallel read/write; not yet calling write_pnc though, need to ensure increment is on correct PEs and all PEs call the write routine, but only the first 80 do the rest...

commit d0719fec27acd0ec4095e57d9b4fdcfb17ce718a
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Mar 5 22:18:43 2020 +0000

    End of day commit for backup

commit 498b816cb4ac7b0a1bf077949e51600bdd4c5f88
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Mar 4 21:39:46 2020 +0000

    Commit to save end of 3/4; need to rethink how to do PE distribution for parallel IO

commit 7e2be785e8d3ac83f106d5c4c0fc0c84d82a888a
Merge: 865b492d ffd64e70
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Mar 4 13:39:31 2020 +0000

    Merge branch 'feature/postanl' into feature/enkf_parallel

commit ffd64e7090ef0122b25f9c0e9a67ead43db5602c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Tue Mar 3 22:12:03 2020 +0000

    #75775 - added FIXgsm to exglobal_postanl_fv3gfs.sh.ecf, it now runs successfully for calcanl_gfs.py and for concatenating diag files

commit da2cf60c4c9aa3e57a28744757332cac4212151a
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Tue Mar 3 21:51:57 2020 +0000

    #75775 - added guess/incr/anl links to exglobal_postanl for calcanl_gfs.py

commit 7a8c70c62c459071b2ecfec6624539d3a8e8ce01
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Tue Mar 3 21:16:24 2020 +0000

    #75775 - fixed bug to hopefully actually run exglobal_postanl script

commit 34f198f23efde46bc553d1e11a185b096b73979a
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Tue Mar 3 20:55:36 2020 +0000

    #75775 - first attempt at exglobal_postanl script; removes steps from exglobal_analysis script; adds symbolic linking of dir.NNNN directories for diag files;

commit 456ddc5746b2ab302aebff60d1a1fceebc089228
Merge: b1d3644a e8e11098
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Mon Mar 2 13:55:25 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit b1d3644a0dd797f4687a4b3918efbe9f675134c2
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Mon Mar 2 13:55:17 2020 +0000

    #72540 #68133 modify calcanl_gfs.py to support when gfs/gdasanal step has fewer than LEVS PEs available; tested on Hera, need to confirm on Dell

commit e8e1109823f26d11ee9a5ffc74234f8d825c8b0a
Author: edward.safford <edward.safford@noaa.gov>
Date:   Fri Feb 28 21:37:56 2020 +0000

    Add changes to make RadMon level cmake
    build script work.

    Change-Id: I7caf1be073d898c4449ef26f1aff8406d0a59776

commit 0e2bfc8be51e030222d4ad4f5b3fec86b0e9f57b
Merge: e0031965 26005ea1
Author: edward.safford <edward.safford@noaa.gov>
Date:   Fri Feb 28 17:55:34 2020 +0000

    Merge branch 'feature/parallel_ncio' of ssh://vlab.ncep.noaa.gov:29418/ProdGSI into feature/parallel_ncio

commit e00319652d138dda56cd2ebd2d3accff3333f284
Author: edward.safford <edward.safford@noaa.gov>
Date:   Fri Feb 28 17:52:49 2020 +0000

    Add changes to radmon's time data extraction
    executable and supporting scripts to add
    low obs count warnings.
    Update gdas_radmon_base.tar file for v16rt2
    sources.

    Change-Id: I78420f5b4783a36012b95d2c9097d636e3f9c04c

commit 26005ea11bbaca290fa055ff72d2c9211c2378ff
Merge: 36c7fa3d 8340f155
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Feb 27 16:22:46 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 36c7fa3ddd8acd2eab9c8693bf48dd7b7dfb5ab0
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Feb 27 16:22:39 2020 +0000

    calcanl_gfs.py change to remove SLURM_HOSTFILE variable for calc_analysis

commit 8340f15587a8d4d75a1f5d47aecd2e3f51fc98e0
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Feb 27 14:44:27 2020 +0000

    Vlab issue #65376:  two updates to exglobal_enkf_post_fv3gfs.sh.ecf

     * change SMOOTH_ENKF default to NO

     * add ENKF_SPREAD to toggle on (YES) or off (NO) creation of ensemble spread file (default NO)

commit 71fb82528bd1940b466edbad1761037ffad72be3
Merge: 9acf4502 d90cdd7c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Feb 27 14:03:49 2020 +0000

    Merge branch 'feature/parallel_ncio' of gerrit:ProdGSI into feature/parallel_ncio

commit 9acf4502e779e51f6d33c1556952db9d8dda9035
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Feb 27 14:03:39 2020 +0000

    Update to calcanl_gfs.py to support interp_inc parallelization on Hera/SLURM

commit d90cdd7ca341e984e6273d2a1562a6e88b9fb1c6
Merge: 2d686687 1a6e33cc
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Feb 26 18:29:11 2020 +0000

    Vlab issue #65376

    Merge branch 'master' at commit:8cf58e3e into feature/parallel_ncio

commit 2d68668774d8e5332727da2de935a7cb6f41f73c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Feb 26 16:49:41 2020 +0000

    Change order of module load for Hera to fix Anaconda issue; modify gsi_utils.py to not need cftime py module

commit 5c585a5ac3b75d1269fb595c8bf052386485bb83
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Feb 25 15:09:41 2020 +0000

    Vlab Issue #65376: correct errors in convinfo settings for uv 290 (ASCAT)

    Following corrections made to global_convinfo.txt and gfsv16_historical global_convinfo.txt files

     * turn off thinning for ASCAT satellite ids 3 and 4

     * place ASCAT satellite id 5 in monitor mode

commit 4d9527c474ac64d1e8638658eba42f8cb125a109
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Feb 24 19:06:44 2020 +0000

    Vlab Issue #65376: update info files for GFS v16 real-time parallel; add fix files for GFS v16 retrospective parallels

         * global_convinfo.txt - place GOES-13 AMVs (satellite id 257) in monitor mode

         * global_satinfo.txt - place all Metop-A MHS channels in monitor mode

         * gfsv16_historical - directory containing convinfo, ozinfo, satinfo, and prepobs_errtable.global for GFS v16 retrospective parallels

commit f6e0aba3bed659e344e4d8cbddca3dbd59df430a
Merge: 2c5fa6aa 32454686
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Feb 21 20:07:34 2020 +0000

    Vlab issue #65376:

    Merge branch 'master' at commit:652c6470 into feature/parallel_ncio

commit 2c5fa6aa4b89e96b0498d0ddc9570b24b9872c21
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Feb 21 16:29:42 2020 +0000

    Vlab issue #65376:  update fix/global_convinfo.txt with stricter gpsro qc.  Leave fv3_historical convinfo files unchanged.

commit 5e7f9042af993261a979c7b9706af2e81b2a6349
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Feb 21 16:18:20 2020 +0000

    Vlab Issue #65376

    Revert DA_GFSv16 (fix) commit "updated all convinfo files for stricter gpsro qc #65376"

commit 7b58ef7911ce7e68719b9e74a685fd32e9c720a9
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Feb 20 22:07:28 2020 +0000

    Move writearray call inside save_jacobian block

commit 8394125a1d466bfb81e6e6bfaa9597be5f8aa1d2
Author: Anna Shlyaeva <anna.v.shlyaeva@noaa.gov>
Date:   Thu Feb 20 02:25:17 2020 +0000

    bugfix for gps jacobian for non-assim'd obs

commit 0d6c4d128f79c098396c049f8a8b997b820d6770
Merge: 33279da7 05e9af3b
Author: Anna Shlyaeva <anna.v.shlyaeva@noaa.gov>
Date:   Wed Feb 19 22:00:16 2020 +0000

    Merge branch 'feature/parallel_ncio' into bugfix/wind_jacobian

commit 33279da74888a39234cce9bae04986a829ece3aa
Author: Anna Shlyaeva <anna.v.shlyaeva@noaa.gov>
Date:   Wed Feb 19 20:46:06 2020 +0000

    use sparse array jacobian for all obs types

commit 05e9af3b74c00f031ad0b5cfae7f16c3999bbbee
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Feb 19 19:53:53 2020 +0000

    Vlab issue #65376:  add MPI_Fortran_LIBRARIES to CMakeLists.txt for oznmon_horiz and oznmon_time

commit f0f348dcf7ea14d0f4f3e17508d0dea8e166bf88
Merge: 962c7f79 4974ce73
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Feb 19 17:48:34 2020 +0000

    Vlab issue #65376

    Merge branch 'master' commit:0b623a3b and commit:0b623a3b into feature/parallel_ncio

commit 962c7f7928d368baaa760b6f045a589538a4c113
Merge: 259b3f36 4291e520
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Feb 19 11:44:54 2020 +0000

    Vlab issue #65376

    Merge branch 'master' at commit:3cb8f0dc into feature/parallel_ncio

commit 7f01a2a0c9e7448fd11f383d6b1a205108555b33
Author: Anna Shlyaeva <anna.v.shlyaeva@noaa.gov>
Date:   Tue Feb 18 15:22:37 2020 +0000

    save wind jacobian as sparse array

commit 259b3f3607bcc5a10dbfe5d35461500bdf75a80d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Feb 14 20:08:13 2020 +0000

    Vlab issue #65376:  update modulefile.ProdGSI.hera to use crtm/2.3.0

commit 865b492df62214bcece1614ded55e1f44ece131f
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Thu Feb 13 13:51:46 2020 +0000

    Commit to move to Mars for testing

commit 902d7d0c778b5847be25aa242938aea9df9fd0f9
Author: Kristen Bathmann <Kristen.Bathmann@noaa.gov>
Date:   Wed Feb 12 21:37:59 2020 +0000

    update to setupbend to alter qc with alt  #65376

commit d5b7668cfdbed5fd4e2e78eeb3bcbf3db51b47e7
Author: Cory.R.Martin@noaa.gov <cory.r.martin@noaa.gov>
Date:   Mon Feb 10 15:12:20 2020 +0000

    Change to module_fv3gfs_ncio to have the option to write out uncompressed files; exercising option in EnKF write

commit 9041addbe192b886add87259f7c554d6da7b4506
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   F…
@ScottSieron-NOAA ScottSieron-NOAA mentioned this issue Dec 15, 2021
Closed
hu5970 referenced this issue in hu5970/GSI Dec 16, 2021
@GangZhao-NOAA
Add observation provider info into obs diagnostic file for ps/w/spd/q…
5f3a9b9 
…/t (#8)

* Adding modifications to obs setup code(setup*.f90) for ps/q/t/w/spd, to include the observation provider and
sub-provider information into the diag files, whichwill be used in read_diag_conv_3drtma in Auto-ObsQC 

* Also adding a new spcific code read_diag_conv_3drtma.f90 under read_diag to read the osb-diag file which includes
the obs provider information for auto-qc.
@XuLi-NOAA XuLi-NOAA mentioned this issue Feb 28, 2022
Closed
@ilianagenkova ilianagenkova mentioned this issue Mar 14, 2022
Merged
@hongli-wang hongli-wang mentioned this issue Jan 25, 2023
Merged
ClaraDraper-NOAA pushed a commit to ClaraDraper-NOAA/GSI that referenced this issue Mar 9, 2023
@jswhit
Merge pull request NOAA-EMC#8 from ClaraDraper-NOAA/bugfix2mDA
5f08c29 
Bugfix2m da
@hu5970 hu5970 mentioned this issue Mar 30, 2023
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Merged
6 tasks
@ShunLiu-NOAA ShunLiu-NOAA mentioned this issue Jun 1, 2023
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@hu5970
Merge pull request NOAA-EMC#8 from DavidHuber-NOAA/intel2022_dh
5d4cf66 
Intel2022 dh
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Merged
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This was referenced Aug 25, 2023
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@GangZhao-NOAA
Adding code to analyze the siginificant wave heigh in GSI 3D Analysis…
728d006 
… (see issue #601) (#614)

Adding code to analyze the siginificant wave heigh in GSI 3D Analysis,
esp. for FV3-LAM model based DA, eg. RRFS-DA, RRFS-3DRTMA. (Also see the
issue in EMC GSI github repository: #601
 Adding I/O for Analysis of Significant Wave Height for 3DRTMA)

<!-- PLEASE READ -->
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- Each PR should only address ONE topic and have an associated issue
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**Description**

<!-- Please include relevant motivation and context. -->
Significant Wave Height (hereafter as SWH) is one of the standard
products provided by the operational (2D)RTMA. To continuously provide
the same products in 3DRTMA, the next-generation RTMA, some efforts in
GSI code need to be made in order to analyze the SWH in 3D analysis of
GSI.
<!-- Please include a summary of the change and which issue is fixed.
-->
The kernel subroutines to assimilate SWH in GSI (such as stphowv.f90,
setuphowv.f90, inthowv.f90, gsi_howvOper.f90 and m_howvNode.f90) already
had been added for (2D)RTMA years ago by Manuel Pondeca, so for this
issue, the code work mainly focus on adding the I/O of SWH in background
and analysis fields for 3DRTMA (esp. RRFS-based 3DRTMA), and some
necessary modifications in background error, options, variables related
to analysis of SWH, etc.
Modified code in GSI:
1. rapidrefresh_cldsurf_mod.f90: adding a few variables related to the
analysis of howv in 3D analysis
2. gsimod.F90: adding namelist options used for analysis of howv in 3D
analysis
3. m_berror_stats_reg.f90: added some code for the special treatment to
the static background error (BE) of howv
4. read_prepbufr.f90: adding code to decode the observation of howv in
prepbufr file when howv is available in firstguess
5. setuphowv.f90: adding code to use obs of howv when howv is available
in firstguess
6. gsi_rfv3io_mod.f90: adding I/O code to read in howv from firstguess
and write out howv into analysis.


<!-- List any dependencies that are required for this change. -->
No dependencies are required for this change.
<!-- Please provide reference to the issue this pull request is
addressing. -->
This PR is addressing the issue
[#601](#601): Adding code to
analyze the siginificant wave heigh in GSI 3D Analysis".
<!-- For e.g. Fixes #IssueNumber -->
Fixes #601

**Type of change**

Please delete options that are not relevant.


- [*] New feature (non-breaking change which adds functionality)



**How Has This Been Tested?**

<!-- Please describe the tests that you ran to verify your changes and
on the platforms these tests were conducted. -->
- Brief results from ctest (regression test) with the modified code (on
WCOSS2 - Cactus):

 [gang.zhao@clogin07:build] (feature/3drtma_howv)$ ctest -N
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
  Test #1: global_3dvar
  Test #2: global_4dvar
  Test #3: global_4denvar
  Test #4: hwrf_nmm_d2
  Test #5: hwrf_nmm_d3
  Test #6: rtma
  Test #7: rrfs_3denvar_glbens
  Test #8: netcdf_fv3_regional
  Test #9: global_enkf

Total Tests: 9
  Test #1: global_3dvar
[gang.zhao@clogin04:build] (feature/3drtma_howv)$ ctest -R global_3dvar
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
    Start 1: global_3dvar
1/1 Test #1: global_3dvar .....................   Passed  1631.12 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 1631.14 sec

  Test #2: global_4dvar
[gang.zhao@clogin09:build] (feature/3drtma_howv)$ ctest -R global_4dvar
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
    Start 2: global_4dvar
1/1 Test #2: global_4dvar .....................   Passed  2462.19 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 2462.23 sec

  Test #3: global_4denvar
[gang.zhao@clogin04:build] (feature/3drtma_howv)$ ctest -R
global_4denvar
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
    Start 3: global_4denvar
1/1 Test #3: global_4denvar ...................   Passed  1922.43 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 1922.46 sec

  Test #4: hwrf_nmm_d2
[gang.zhao@clogin09:build] (feature/3drtma_howv)$ ctest -R hwrf_nmm_d2
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
    Start 4: hwrf_nmm_d2
1/1 Test #4: hwrf_nmm_d2 ......................   Passed  1214.10 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 1214.20 sec

  Test #5: hwrf_nmm_d3
[gang.zhao@clogin09:build] (feature/3drtma_howv)$ ctest -R hwrf_nmm_d3
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
    Start 5: hwrf_nmm_d3
1/1 Test #5: hwrf_nmm_d3 ......................   Passed  736.38 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 736.50 sec

  Test #6: rtma
[gang.zhao@clogin05:build] (feature/3drtma_howv)$ ctest -R rtma
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
    Start 6: rtma
1/1 Test #6: rtma .............................   Passed  1027.01 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 1027.01 sec

  Test #7: rrfs_3denvar_glbens
[gang.zhao@clogin06:build] (feature/3drtma_howv)$ ctest -R
rrfs_3denvar_glbens
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
    Start 7: rrfs_3denvar_glbens
1/1 Test #7: rrfs_3denvar_glbens ..............   Passed  484.69 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 484.70 sec

  Test #8: netcdf_fv3_regional
[gang.zhao@clogin03:build] (feature/3drtma_howv)$ ctest -R
netcdf_fv3_regional
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
    Start 8: netcdf_fv3_regional
1/1 Test #8: netcdf_fv3_regional ..............   Passed  483.08 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 483.11 sec

  Test #9: global_enkf
[gang.zhao@clogin03:build] (feature/3drtma_howv)$ ctest -R global_enkf
Test project /lfs/h2/emc/da/save/gang.zhao/WorkDir/WaveHgt/develop/build
    Start 9: global_enkf
1/1 Test #9: global_enkf ......................   Passed  488.50 sec

100% tests passed, 0 tests failed out of 1

Total Test time (real) = 488.57 sec

- The modified GSI code passed the regression tests (all 9 tasks) on
Hera and WCOSS2 (Cactus).

- adding the analysis of howv only has very trial influences on the
analyses of other variables. Here is the statistics of the differences
of other variables (u/v/t/ps/q/t2m/q2m) from the runs of GSI without
howv vs. with howv (from a testing case 2023-07-12_14:00:00 UTC in 3km
North-American domain):

comparing two netcdf files:
fcst_fv3lam_hyb_betas/INPUT/fv_core.res.tile1.nc
fcst_fv3lam_nodata_noinfo/INPUT/fv_core.res.tile1.nc ...
Variable Group Count Sum AbsSum Min Max Range Mean StdDev
u / 602135550 3926.84 25760.8 -0.1026 0.485788 0.588388 6.52152e-06
0.00115817
v / 620166777 -4891.34 32582.5 -0.835774 0.268402 1.10418 -7.88714e-06
0.00197793
T / 155987083 178.048 6497.51 -0.0246582 0.0384064 0.0630646 1.14143e-06
0.000218737
delp / 19559676 -281.532 3008.29 -0.00292969 0.00219727 0.00512695
-1.43935e-05 0.000183727

comparing two netcdf files:
fcst_fv3lam_hyb_betas/INPUT/fv_tracer.res.tile1.nc
fcst_fv3lam_nodata_noinfo/INPUT/fv_tracer.res.tile1.nc ...
Variable Group Count Sum AbsSum Min Max Range Mean StdDev
sphum / 430707614 0.594287 2.77816 -2.6139e-05 3.1759e-05 5.7898e-05
1.37979e-09 8.03072e-08

comparing two netcdf files: fcst_fv3lam_hyb_betas/INPUT/sfc_data.nc
fcst_fv3lam_nodata_noinfo/INPUT/sfc_data.nc ...
Variable Group Count Sum AbsSum Min Max Range Mean StdDev
t2m / 10665000 43.3899 135.095 -0.00152825 0.00686629 0.00839454
4.06844e-06 5.02866e-05
q2m / 10665000 0.0192553 0.124707 -3.1476e-06 1.77554e-05 2.0903e-05
1.80547e-09 5.89657e-08

It could be seen that the differences are trivial and ignorable.

<!-- Provide instructions so we can reproduce. -->
The regression tests were done by following the instructions of "[GSI
Ctests (regression
tests)](https://github.com/NOAA-EMC/GSI/wiki/GSI-Ctests-(regression-tests))"
in [GSI Wiki](https://github.com/NOAA-EMC/GSI/wiki)
<!-- Please also list any relevant details for your test configuration
-->
The modified code had also been tested with a testing case
2023-07-12_14:00:00 UTC for 3km North-American domain
Here is a brief summary of the test results:
1. Here is the analysis increment of Significant Wave Height (aka howv
hereafter): pure 3dvar, static background error of howv is 0.42 meters,
and the de-correlation length scale is 170km.

![HOWV_var_inc_maprll_datll_reg_ncf](https://github.com/NOAA-EMC/GSI/assets/53267411/4fdeeb82-7258-4344-be69-cce747474312)
2. The following figure shows the distribution of howv in the analysis
(used obs is in green, rejected in red). Obviously the location of used
obs of howv match the area of non-zero analysis increments of howv.

![var_obs_2023071214_howv_maprll_datll_reg_ncf](https://github.com/NOAA-EMC/GSI/assets/53267411/d4ed6013-cfc8-486e-8f47-db07ec0e4e53)
3. The following figure is the analysis increment of howv with hybrid
envar analysis (using gdas ensemble 80 members and the ensemble weight
is 84%), and the static BE of howv is tuned/inflated. The analysis
increments are very similar to the results from pure 3dvar run (see the
first figure)

![HOWV_hyb_betas016_inc_maprll_datll_reg_ncf](https://github.com/NOAA-EMC/GSI/assets/53267411/e6e696e8-932b-42ab-9001-3472e970b21c)
4. The last figure shows the analysis increments of howv with hybrid
envar analysis (using gdas ensemble 80 members and the ensemble weight
is 84%), but the static BE of howv is NOT tuned. It can be observed that
the analysis increments is less than the results from the hybrid run
with tuning the static BE of howv. That is because the weight of static
BE (16%) reduced the background error of howv (ensemble of howv is not
available yet), so the impact of obs is decreased.

![HOWV_hyb_betas016_noTune_inc_maprll_datll_reg_ncf](https://github.com/NOAA-EMC/GSI/assets/53267411/ca25d068-fc86-4d47-a9d2-46e02ac22dac)

  
**Checklist**

- [*] My code follows the style guidelines of this project
- [*] I have performed a self-review of my own code
- [*] I have commented my code, particularly in hard-to-understand areas
- [*] New and existing tests pass with my changes
- [*] Any dependent changes have been merged and published

**DUE DATE for this PR is 10/5/2023.** If this PR is not merged into
`develop` by this date, the PR will be closed and returned to the
developer.
@HaidaoLin-NOAA HaidaoLin-NOAA mentioned this issue Sep 30, 2023
Merged
7 tasks
@ShunLiu-NOAA ShunLiu-NOAA mentioned this issue Oct 4, 2023
Merged
9 tasks
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