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Moving Nest Functionality #179

Merged
merged 136 commits into from
Apr 11, 2022
Merged

Moving Nest Functionality #179

merged 136 commits into from
Apr 11, 2022

Commits on May 8, 2020

  1. Merge branch 'dev/emc' into support/HAFS

    @BinLiu-NOAA
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Commits on Jul 11, 2020

  1. Merge remote-tracking branch 'remotes/upstream/dev/emc' into support/… 

    …HAFS
    @BinLiu-NOAA
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  2. Remove the hardcoded L64 source code line in tools/external_ic.F90, s… 

    …o that the

model can run with other vertical level configurations.
    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 11, 2020
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Commits on Jul 16, 2020

  1. Merge remote-tracking branch 'upstream/dev/emc' into support/HAFS

    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 16, 2020
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Commits on Jan 19, 2021

  1. Moving Nest Initial Implementation

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Commits on Jan 22, 2021

  1. Merge remote-tracking branch 'remotes/origin/dev/emc' into feature/ha… 

    …fs_moving_nest
    @BinLiu-NOAA
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Commits on Feb 5, 2021

  1. Change speed of moving nest to avoid it going off edge of parent tile.

    @wramstrom
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Commits on Feb 10, 2021

  1. Merge remote-tracking branch 'remotes/upstream/dev/emc' into support/… 

    …HAFS
    @BinLiu-NOAA
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  2. Merge branch 'support/HAFS' into feature/hafs_moving_nest

    @BinLiu-NOAA
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Commits on Feb 23, 2021

  1. Corrected range of value checking for sina and cosa.

    @wramstrom
    wramstrom committed Feb 23, 2021
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  2. Turned down debugging logging.

    @wramstrom
    wramstrom committed Feb 23, 2021
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  3. Added bounds checking so moving nest stays on parent tile. Only read … 

    …static latlon grid file once. Reduced number of variables output by mn_prog_dump_to_netcdf.
    @wramstrom
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  4. Added call to bounds checking so nest stays on parent tile. Modified … 

    …to read from static grid files for moving nest only once. Added crude scaling of nest motion speed based on timestep.
    @wramstrom
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  5. Merged edits to eval_move_nest(). 

    Merge branch 'feature/hafs_moving_nest' of https://github.com/hafs-community/GFDL_atmos_cubed_sphere into feature/hafs_moving_nest

Conflicts:
	driver/fvGFS/atmosphere.F90
    @wramstrom
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Commits on Mar 2, 2021

  1. Added moving nest code for delz variable. Improved scaling of automat… 

    …ed nest motion. Removed forced exit at timestep 4800.
    @wramstrom
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  2. Adjusted moving nest edge subroutine. Will stop motion when 5 points … 

    …from edge, and block motion for the rest of model run.
    @wramstrom
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Commits on Mar 3, 2021

  1. Output nest center lat/lon after nest motion. Reduce logging from per… 

    …mit_move_nest().
    @wramstrom
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Commits on Mar 15, 2021

  1. Added moving nest support to shift SST/skin temperature. Added 2D sub… 

    …routines to moving nest interfaces. Added performance tracking to init_grid and setup_aligned_nest.
    @wramstrom
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Commits on Apr 2, 2021

  1. Optimized init_grid/setup_aligned_nest. Added performance timers.

    @wramstrom
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Commits on Apr 5, 2021

  1. Merge remote-tracking branch 'remotes/upstream/dev/emc' into feature/… 

    …hafs_moving_nest

(Bill, Kyle, Xuejin, Bin)
    @BinLiu-NOAA
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Commits on Apr 6, 2021

  1. Brought back if-statement that was lost in merge.

    @wramstrom
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  2. Removed obsolete MPP subroutine from use clause.

    @wramstrom
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Commits on Apr 17, 2021

  1. Add merge_import and debug_merge options of atmos_model_nml in driver… 

    …/fvGFS/atmosphere.F90.
    @BinLiu-NOAA
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  2. Merge remote-tracking branch 'remotes/ch/feature/ic_netcdf' into supp… 

    …ort/HAFS
    @BinLiu-NOAA
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Commits on May 11, 2021

  1. Merge remote-tracking branch 'remotes/upstream/dev/emc' into support/… 

    …HAFS
    @BinLiu-NOAA
    BinLiu-NOAA committed May 11, 2021
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Commits on May 26, 2021

  1. Added nest motion for terrain from static file.

    @wramstrom
    wramstrom committed May 26, 2021
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Commits on May 28, 2021

  1. Restructured calls to move nest.

    @wramstrom
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Commits on Jun 2, 2021

  1. *Add the capability of dealing with soil variables for moving nest. 

    *Update the moving nesting interface.
Note: Coding session among Bill, Xuejin, Kyle, Zhan, Chunxi, Weiguo, Bin
    @BinLiu-NOAA
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Commits on Jun 8, 2021

  1. Updates to moving nest for physics variables so code complies and run… 

    …s. Added new subroutines for high precision physics variables.
    @wramstrom
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Commits on Jun 9, 2021

  1. *Define the internal vortex tracker needed variables 

    *Add a fv_diag_tracker subroutine to obtain the tracker needed variables
*Identify and add the call interfaces for the internal vortex tracker in driver/fvGFS/atmosphere.F90.
Note: These are outcome from the coding sessions among Xuejin, Chunxi, Zhan, and Bin.
    @BinLiu-NOAA
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  2. Working version of mn_phys_dump_to_netcdf

    @wramstrom
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Commits on Jun 10, 2021

  1. Added soil variables to mn_phys_dump_to_netcdf. Required changes to p… 

    …ass in IPD data structures.
    @wramstrom
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  2. Merge remote-tracking branch 'remotes/origin/feature/hafs_moving_nest… 

    …' into feature/hafs_vortex_tracking
    @BinLiu-NOAA
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Commits on Jun 15, 2021

  1. Added phy_f2d and phy_f3d physics variables to moving nest. Added lan… 

    …d fraction and terrain std to moving nest.
    @wramstrom
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Commits on Jun 25, 2021

  1. Reinitialize zsurf in fv_diagnostics.F90. Perform vertical remapping … 

    …after nest move. Added nest move for static physics variables read in from file.
    @wramstrom
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Commits on Jun 30, 2021

  1. Update xlat, xlon, and related arrays in physics after nest move. Cod… 

    …e changes to preserve 64 bit precision of values read in from netCDF, needed for physics variables.
    @wramstrom
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Commits on Jul 1, 2021

  1. Added many 2D surface physics variables to nest motion. Corrected cal… 

    …l signature for GFS_grid_populate.
    @wramstrom
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Commits on Jul 6, 2021

  1. Added NSST variables to moving nest functionality.

    @wramstrom
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Commits on Jul 9, 2021

  1. Merge commit '3720aeae54eeed54d4e8274756857542b3e5dccc' into support/… 

    …HAFS
    @BinLiu-NOAA
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Commits on Jul 15, 2021

  1. Removed some logging to speed performance testing. Initial implementa… 

    …tion of physics IFD variable.
    @wramstrom
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  2. Set physics variable IFD from land sea mask (with values flipped).

    @wramstrom
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  3. Handle strong/weak zenith angle albedos facsf facwf by interpolating … 

    …from parent for moving nest.
    @wramstrom
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Commits on Jul 17, 2021

  1. Merge remote-tracking branch 'upstream/dev/emc' into support/HAFS

    @BinLiu-NOAA
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Commits on Jul 23, 2021

  1. Added terrain_smoother options to namelist, for smoothing edges of te… 

    …rrain in moving nest.
    @wramstrom
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  2. Turn off vertical remapping with nest moves. Seems not to be needed.

    @wramstrom
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Commits on Jul 28, 2021

  1. Added 10m winds, total precip, surface temperature to physics nest mo… 

    …tion code.
    @wramstrom
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Commits on Jul 29, 2021

  1. Added comment headers, connected some moving nest main routine variab… 

    …les to namelist.
    @wramstrom
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  2. Merge remote-tracking branch 'remotes/origin/feature/hafs_moving_nest… 

    …' into feature/hafs_vortex_tracking
    @BinLiu-NOAA
    BinLiu-NOAA committed Jul 29, 2021
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Commits on Jul 30, 2021

  1. Removed some logging statements

    @wramstrom
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Commits on Aug 5, 2021

  1. Revert "Add merge_import and debug_merge options of atmos_model_nml i… 

    …n driver/fvGFS/atmosphere.F90."

This reverts commit cd2879d.
    @BinLiu-NOAA
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Commits on Aug 27, 2021

  1. *Add model/fv_tracker.F90 containing the FV internal tracker ported f… 

    …rom HWRF.

*Add mp_reduce_[min/max][val/loc] in tools/fv_mp_mod.F90 needed by the internal
tracker
*Add internal tracker needed variables and interface in model/fv_arrays.F90,
model/fv_control.F90, and driver/fvGFS/atmosphere.F90.

Contributors: @XuejinZhang-NOAA, @BinLiu-NOAA, @WilliamRamstrom-NOAA,
@ChunxiZhang-NOAA, @ZhanZhang-NOAA
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  2. Add get_distsq in fv_tracker.F90 to calculate the square of the appro… 

    …ximate

distance to the domain center at all points.
    @BinLiu-NOAA
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Commits on Aug 28, 2021

  1. Internal vortex tracker related clean up in atmosphere.F90 and fv_tra… 

    …cker.F90
    @BinLiu-NOAA
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  2. Fixes for internal tracker related changes so that it can build succe… 

    …ssfully.
    @BinLiu-NOAA
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Commits on Aug 31, 2021

  1. Fixes for internal tracker related changes so that it can build succe… 

    …ssfully.
    @BinLiu-NOAA
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  2. Merge branch 'feature/hafs_vortex_tracking' of https://github.com/haf… 

    …s-community/GFDL_atmos_cubed_sphere into feature/hafs_vortex_tracking
    @BinLiu-NOAA
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  3. Connect internal tracker with the nest move interface for moving nest… 

    …ing.

Code sprint: @XuejinZhang-NOAA, @WilliamRamstrom-NOAA, @ChunxiZhang-NOAA,
@KyleAhern-NOAA, @ZhanZhang-NOAA, @BinLiu-NOAA
    @BinLiu-NOAA
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Commits on Sep 9, 2021

  1. Debug FV3 internal vortex tracker and it now can find the storm prope… 

    …rly.

Connecting with nest-moving needs further debug though.
    @BinLiu-NOAA
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Commits on Sep 10, 2021

  1. Connect automatic storm-following and prescribed moving with the nest… 

    … moving procedure properly.

Contributors: @BinLiu-NOAA, @XuejinZhang-NOAA, @WilliamRamstrom-NOAA.
    @BinLiu-NOAA
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  2. Merge remote-tracking branch 'upstream/dev/emc' into support/HAFS

    @BinLiu-NOAA
    BinLiu-NOAA committed Sep 10, 2021
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Commits on Sep 17, 2021

  1. Merge branch 'feature/hafs_vortex_tracking' into feature/hafs_moving_… 

    …nest
    @BinLiu-NOAA
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  2. Commented out call to fms_io_exit() that was needed for moving nest d… 

    …ebug outputs.
    @wramstrom
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  3. Added moving nest handling of physics variables - hprime, zorlo, zorlw

    @wramstrom
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  4. Fixed off-by-one error with moving nest terrain data, updated physics… 

    … version of orography.
    @wramstrom
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Commits on Sep 24, 2021

  1. Moved temporary moving nest physics grids into fv_atmos_type. Plus re… 

    …moved some dead code.
    @wramstrom
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  2. Fixed bug in the moving nest physics transfer to fv_arrays.F90

    @wramstrom
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  3. Fixed bug in fv_moving_nest_main.F90 where profiling timers were star… 

    …ted repeatedly.
    @wramstrom
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  4. Disabled some debug logging statements.

    @wramstrom
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Commits on Sep 27, 2021

  1. Switched off detailed moving nest performance profiling. Moved timest… 

    …ep logging from print statements to call to mpp_error.
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Commits on Sep 30, 2021

  1. Separated moving nest physics code into separate module. Merged loggi… 

    …ng code into fv_moving_nest_utils.F90.
    @wramstrom
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  2. Moved physics-related routines into separate file.

    @wramstrom
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Commits on Oct 1, 2021

  1. Remove model/fv_moving_nest_logging.F90, which is no longer needed (B… 

    …ill).
    @BinLiu-NOAA
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Commits on Oct 6, 2021

  1. Merge remote-tracking branch 'remotes/upstream/dev/emc' into feature/… 

    …hafs_nesting

Working session among @wramstrom, @BinLiu-NOAA, @Xuejin-Zhang, @ChunxiZhang-NOAA, @A-Kyle.
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Commits on Oct 8, 2021

  1. Improved handling of 32bit/64bit reals as subroutine arguments, to pe… 

    …rmit 64 bit compiles.
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Commits on Oct 12, 2021

  1. Additional changes to permit 32bit/64bit compiles.

    @wramstrom
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Commits on Oct 26, 2021

  1. Added handling of new albedo variables to moving nest. Added handling… 

    … of lakes to moving nest.
    @wramstrom
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Commits on Nov 2, 2021

  1. Added t-dependent lon-lat (grid_mlont, grid_mlatt) to fv_diagnostics

    A-Kyle committed Nov 2, 2021
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  2. Merge commit '8a3a75903de68ae15527f116087ff2020e86d717' into support/… 

    …HAFS
    @BinLiu-NOAA
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Commits on Nov 17, 2021

  1. Added moving nest functionality for neststruct%i/j stagger.

    @wramstrom
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Commits on Nov 19, 2021

  1. Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu… 

    …re/hafs_nesting
    @BinLiu-NOAA
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Commits on Nov 20, 2021

  1. Merge remote-tracking branch 'remotes/upstream/dev/emc' into feature/… 

    …hafs_nesting
    @BinLiu-NOAA
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Commits on Dec 3, 2021

  1. Added preliminary land masked interpolation for moving nest.

    @wramstrom
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Commits on Dec 7, 2021

  1. fix center-finding arguments in tracker; add debug routine

    A-Kyle committed Dec 7, 2021
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Commits on Dec 14, 2021

  1. Regional Moving Nest Enabled. Fixed moving nest for land emissivity a… 

    …nd land albedo. Static surface files renamed.
    @wramstrom
    wramstrom committed Dec 14, 2021
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Commits on Dec 17, 2021

  1. Better handling of longitudes > 180.

    @wramstrom
    wramstrom committed Dec 17, 2021
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  2. Removed logging statements

    @wramstrom
    wramstrom committed Dec 17, 2021
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  3. Moving Nest updates for emis_lnd and emis_wat.

    @wramstrom
    wramstrom committed Dec 17, 2021
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Commits on Dec 18, 2021

  1. Set the default value for surface_dir as INPUT/moving_nest needed by … 

    …moving

nesting and remove the fix_sfc directory structure inside INPUT/moving_nest.
    @BinLiu-NOAA
    BinLiu-NOAA committed Dec 18, 2021
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Commits on Jan 29, 2022

  1. Merge remote-tracking branch 'upstream/dev/emc' into feature/hafs_nes… 

    …ting
    @BinLiu-NOAA
    BinLiu-NOAA committed Jan 29, 2022
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Commits on Jan 30, 2022

  1. Added patch for nest motion of surface emissivity and albedo.

    @wramstrom
    wramstrom committed Jan 30, 2022
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  2. Merge branch 'feature/hafs_nesting' of https://github.com/hafs-commun… 

    …ity/GFDL_atmos_cubed_sphere into feature/hafs_nesting
    @wramstrom
    wramstrom committed Jan 30, 2022
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Commits on Jan 31, 2022

  1. Merge branch 'feature/hafs_nesting' of https://github.com/hafs-commun… 

    …ity/GFDL_atmos_cubed_sphere into feature/hafs_nesting
    @BinLiu-NOAA
    BinLiu-NOAA committed Jan 31, 2022
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  2. Comment out the dump_surface_physics related debug output in 

    tools/fv_diagnostics.F90. Other the Cmake build fails due to circular
dependency.
    @BinLiu-NOAA
    BinLiu-NOAA committed Jan 31, 2022
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Commits on Feb 2, 2022

  1. Merge remote-tracking branch 'DJ/multiple_output_grids' into feature/… 

    …hafs_nesting
    @BinLiu-NOAA
    BinLiu-NOAA committed Feb 2, 2022
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Commits on Feb 7, 2022

  1. Only enter moving nest code for moving nest configurations

    @wramstrom
    wramstrom committed Feb 7, 2022
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Commits on Feb 8, 2022

  1. Code cleanup of moving nest modules

    @wramstrom
    wramstrom committed Feb 8, 2022
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Commits on Feb 11, 2022

  1. Added doxygen comments and regularized indentation.

    @wramstrom
    wramstrom committed Feb 11, 2022
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Commits on Feb 13, 2022

  1. *Add the capability of downscaling the coupling variables (e.g., SST)… 

    … from the

parent grid into the nested grid. This is needed since only the atmospheric
parent grid is coupled to other model components currently.
*Update the logic to determine the moving_nesting property.
    @BinLiu-NOAA
    BinLiu-NOAA committed Feb 13, 2022
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  2. Merge remote-tracking branch 'remotes/DJ/multiple_output_grids' into … 

    …feature/hafs_nest_cpl
    @BinLiu-NOAA
    BinLiu-NOAA committed Feb 13, 2022
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Commits on Feb 14, 2022

  1. Connected move_nsst to namelist option.

    @wramstrom
    wramstrom committed Feb 14, 2022
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Commits on Feb 15, 2022

  1. Revised namelist options for move_nsst in moving nest.

    @wramstrom
    wramstrom committed Feb 15, 2022
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  2. Moving nest for physics ifd only if using NSST.

    @wramstrom
    wramstrom committed Feb 15, 2022
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  3. Modify atmosphere_domain interface to pass both moving_nest_parent an… 

    …d is_moving_nest up to FV3ATM.
    @BinLiu-NOAA
    BinLiu-NOAA committed Feb 15, 2022
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  4. Merge remote-tracking branch 'remotes/upstream/dev/emc' into feature/… 

    …hafs_nest_cpl
    @BinLiu-NOAA
    BinLiu-NOAA committed Feb 15, 2022
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Commits on Feb 16, 2022

  1. Expand and add the capability to output the grid_mspec (similar to gr… 

    …id_spec)

variables for the moving-nesting configuration.
    @BinLiu-NOAA
    BinLiu-NOAA committed Feb 16, 2022
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Commits on Feb 17, 2022

  1. Added full_zs_filter when nest moves.

    @wramstrom
    wramstrom committed Feb 17, 2022
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Commits on Feb 18, 2022

  1. Merge remote-tracking branch 'remotes/origin/feature/hafs_nest_sync' … 

    …into feature/hafs_nest_cpl
    @BinLiu-NOAA
    BinLiu-NOAA committed Feb 18, 2022
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Commits on Feb 25, 2022

  1. Upgrade to read in monthly high-resolution albedo information for mov… 

    …ing nest.
    @wramstrom
    wramstrom committed Feb 25, 2022
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Commits on Feb 26, 2022

  1. Use same real kind for centers and corner... now that ESMF is directl… 

    …y referencing these data arrays.
    @theurich
    theurich committed Feb 26, 2022
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Commits on Feb 27, 2022

  1. Merge remote-tracking branch 'remotes/upstream/dev/emc' into feature/… 

    …hafs_nest_cpl
    @BinLiu-NOAA
    BinLiu-NOAA committed Feb 27, 2022
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Commits on Feb 28, 2022

  1. Handle moving nest interpolation of sfc roughness variables with land… 

    … mask
    @wramstrom
    wramstrom committed Feb 28, 2022
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Commits on Mar 2, 2022

  1. Merge branch 'feature/hafs_nest_cpl' of https://github.com/hafs-commu… 

    …nity/GFDL_atmos_cubed_sphere into feature/hafs_nest_cpl
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 2, 2022
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Commits on Mar 3, 2022

  1. Reapply handling of NSST being turned off for coupled runs.

    @wramstrom
    wramstrom committed Mar 3, 2022
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Commits on Mar 4, 2022

  1. Merge remote-tracking branch 'remotes/origin/feature/hafs_nest_cpl' i… 

    …nto feature/hafs_nest_cpl_moving
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 4, 2022
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Commits on Mar 9, 2022

  1. Added Doxygen documentation and code cleanup.

    @wramstrom
    wramstrom committed Mar 9, 2022
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  2. Merging code cleanup with other changes. 

    Merge branch 'feature/hafs_nest_cpl' of https://github.com/hafs-community/GFDL_atmos_cubed_sphere into feature/hafs_nest_cpl
    @wramstrom
    wramstrom committed Mar 9, 2022
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  3. add zsurf to diag fields for moving nest

    A-Kyle committed Mar 9, 2022
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Commits on Mar 10, 2022

  1. Updated formatting of header comments.

    @wramstrom
    wramstrom committed Mar 10, 2022
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Commits on Mar 15, 2022

  1. Fix syntax error in bounding_box.F90 

    Corrected syntax error in bounding_box.F90 that was uncovered with gfortran.
    @wramstrom
    wramstrom authored Mar 15, 2022
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Commits on Mar 22, 2022

  1. Update Coriolis terms after nest move.

    @wramstrom
    wramstrom committed Mar 22, 2022
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Commits on Mar 24, 2022

  1. Simplified call to EOSHIFT for compiler portability. Now omits BOUNDA… 

    …RY argument to use the default value of 0.0 (in single or double precision), instead of explicitly setting it to 0
    @wramstrom
    wramstrom committed Mar 24, 2022
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Commits on Mar 25, 2022

  1. Merge remote-tracking branch 'remotes/upstream/dev/emc' into feature/… 

    …hafs_nest_cpl
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 25, 2022
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  2. Moving-nesting related code clean-ups (Bill, Kyle, Bin).

    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 25, 2022
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Commits on Mar 26, 2022

  1. Fix a typo in fill_nested_grid_cpl in driver/fvGFS/atmosphere.F90.

    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 26, 2022
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Commits on Mar 31, 2022

  1. Modularization of moving nest and automated storm tracker.

    @wramstrom
    wramstrom committed Mar 31, 2022
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  2. Separate moving_nest code into its own directory.

    @wramstrom
    wramstrom committed Mar 31, 2022
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  3. *fv_tracker.F90 related clean-ups. 

    *fv_moving_nest_types.F90 clean-ups.
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 31, 2022
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  4. Clean up mzsurf from fv_diagnostics.F90 and fv_diagnostics.h (Kyle an… 

    …d Bin).
    @BinLiu-NOAA
    BinLiu-NOAA committed Mar 31, 2022
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  5. Made call to EOSHIFT portable to gfortran.

    @wramstrom
    wramstrom committed Mar 31, 2022
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  6. Made call to EOSHIFT portable to gfortran. 

    Merge branch 'feature/hafs_nest_cpl' of https://github.com/hafs-community/GFDL_atmos_cubed_sphere into feature/hafs_nest_cpl
    @wramstrom
    wramstrom committed Mar 31, 2022
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  7. Removed commented-out code from fv_control.F90.

    @wramstrom
    wramstrom committed Mar 31, 2022
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  8. Revert logging output in fv_diagnostics.F90 to original format.

    @wramstrom
    wramstrom committed Mar 31, 2022
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Commits on Apr 1, 2022

  1. Rename downcpl2d into parent2nest_2d to reduce confusion. And the 

    parent2nest_2d variable is to downscale/remap a 2d variable from the parent to
its nest.
    @BinLiu-NOAA
    BinLiu-NOAA committed Apr 1, 2022
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  2. Remove moving nest debugging statements from dycore core.

    @wramstrom
    wramstrom committed Apr 1, 2022
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  3. Remove moving nest debugging statements from dycore. 

    Merge branch 'feature/hafs_nest_cpl' of https://github.com/hafs-community/GFDL_atmos_cubed_sphere into feature/hafs_nest_cpl
    @wramstrom
    wramstrom committed Apr 1, 2022
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Commits on Apr 6, 2022

  1. Moving nest bug fix for nest edge on prime meridian.

    @wramstrom
    wramstrom committed Apr 6, 2022
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