diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 88bf495f9..990396308 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -80,7 +80,6 @@ repos:
     hooks:
       - id: shellcheck
         args: ["--severity=warning"]
-        files: ^ci/
 
 default_language_version:
       python: python3
diff --git a/build.sh b/build.sh
index 9165dbfbe..7cb9aa82c 100755
--- a/build.sh
+++ b/build.sh
@@ -23,7 +23,7 @@ ARGS=$*
 
 # NOTE: ensure all dir changes are relative to the location of this
 # script, and that this script resides in the repo dir!
-REPODIR=$(cd $(dirname $0); pwd)
+REPODIR=$(cd "$(dirname "$0")"; pwd)
 LIBCUOPT_BUILD_DIR=${LIBCUOPT_BUILD_DIR:=${REPODIR}/cpp/build}
 LIBMPS_PARSER_BUILD_DIR=${LIBMPS_PARSER_BUILD_DIR:=${REPODIR}/cpp/libmps_parser/build}
 
@@ -77,8 +77,8 @@ INSTALL_TARGET=install
 BUILD_DISABLE_DEPRECATION_WARNING=ON
 BUILD_ALL_GPU_ARCH=0
 BUILD_CI_ONLY=0
-CACHE_ARGS=""
-PYTHON_ARGS_FOR_INSTALL="-m pip install --no-build-isolation --no-deps"
+CACHE_ARGS=()
+PYTHON_ARGS_FOR_INSTALL=("-m" "pip" "install" "--no-build-isolation" "--no-deps")
 LOGGING_ACTIVE_LEVEL="INFO"
 FETCH_RAPIDS=ON
 
@@ -91,35 +91,35 @@ BUILD_ABI=${BUILD_ABI:=ON}
 export CMAKE_GENERATOR=Ninja
 
 function hasArg {
-    (( ${NUMARGS} != 0 )) && (echo " ${ARGS} " | grep -q " $1 ")
+    (( NUMARGS != 0 )) && (echo " ${ARGS} " | grep -q " $1 ")
 }
 
 function buildAll {
-    (( ${NUMARGS} == 0 )) || !(echo " ${ARGS} " | grep -q " [^-]\+ ")
+    (( NUMARGS == 0 )) || ! (echo " ${ARGS} " | grep -q " [^-]\+ ")
 }
 
 function cacheTool {
     # Check for multiple cache options
-    if [[ $(echo $ARGS | { grep -Eo "\-\-cache\-tool" || true; } | wc -l ) -gt 1 ]]; then
+    if [[ $(echo "$ARGS" | { grep -Eo "\-\-cache\-tool" || true; } | wc -l ) -gt 1 ]]; then
         echo "Multiple --cache-tool options were provided, please provide only one: ${ARGS}"
         exit 1
     fi
     # Check for cache tool option
-    if [[ -n $(echo $ARGS | { grep -E "\-\-cache\-tool" || true; } ) ]]; then
+    if [[ -n $(echo "$ARGS" | { grep -E "\-\-cache\-tool" || true; } ) ]]; then
         # There are possible weird edge cases that may cause this regex filter to output nothing and fail silently
         # the true pipe will catch any weird edge cases that may happen and will cause the program to fall back
         # on the invalid option error
-        CACHE_TOOL=$(echo $ARGS | sed -e 's/.*--cache-tool=//' -e 's/ .*//')
+        CACHE_TOOL=$(echo "$ARGS" | sed -e 's/.*--cache-tool=//' -e 's/ .*//')
         if [[ -n ${CACHE_TOOL} ]]; then
             # Remove the full CACHE_TOOL argument from list of args so that it passes validArgs function
             ARGS=${ARGS//--cache-tool=$CACHE_TOOL/}
-            CACHE_ARGS="-DCMAKE_CUDA_COMPILER_LAUNCHER=${CACHE_TOOL} -DCMAKE_C_COMPILER_LAUNCHER=${CACHE_TOOL} -DCMAKE_CXX_COMPILER_LAUNCHER=${CACHE_TOOL}"
+            CACHE_ARGS=("-DCMAKE_CUDA_COMPILER_LAUNCHER=${CACHE_TOOL}" "-DCMAKE_C_COMPILER_LAUNCHER=${CACHE_TOOL}" "-DCMAKE_CXX_COMPILER_LAUNCHER=${CACHE_TOOL}")
         fi
     fi
 }
 
 function loggingArgs {
-    if [[ $(echo $ARGS | { grep -Eo "\-l" || true; } | wc -l ) -gt 1 ]]; then
+    if [[ $(echo "$ARGS" | { grep -Eo "\-l" || true; } | wc -l ) -gt 1 ]]; then
         echo "Multiple -l logging options were provided, please provide only one: ${ARGS}"
         exit 1
     fi
@@ -127,17 +127,17 @@ function loggingArgs {
     LOG_LEVEL_LIST=("TRACE" "DEBUG" "INFO" "WARN" "ERROR" "CRITICAL" "OFF")
 
     # Check for logging option
-    if [[ -n $(echo $ARGS | { grep -E "\-l" || true; } ) ]]; then
-        LOGGING_ARGS=$(echo $ARGS | { grep -Eo "\-l=\S+" || true; })
+    if [[ -n $(echo "$ARGS" | { grep -E "\-l" || true; } ) ]]; then
+        LOGGING_ARGS=$(echo "$ARGS" | { grep -Eo "\-l=\S+" || true; })
         if [[ -n ${LOGGING_ARGS} ]]; then
             # Remove the full log argument from list of args so that it passes validArgs function
             ARGS=${ARGS//$LOGGING_ARGS/}
             # Filter the full argument down to just the extra string that will be added to cmake call
-            LOGGING_ARGS=$(echo $LOGGING_ARGS | sed -e 's/^"//' -e 's/"$//' | cut -c4- | grep -Eo "\S+" | tr '[:lower:]' '[:upper:]')
-            if [[ "${LOG_LEVEL_LIST[@]}" =~ $LOGGING_ARGS ]]; then
+            LOGGING_ARGS=$(echo "$LOGGING_ARGS" | sed -e 's/^"//' -e 's/"$//' | cut -c4- | grep -Eo "\S+" | tr '[:lower:]' '[:upper:]')
+            if [[ "${LOG_LEVEL_LIST[*]}" =~ $LOGGING_ARGS ]]; then
                 LOGGING_ACTIVE_LEVEL=$LOGGING_ARGS
             else
-                echo "Invalid logging arg $LOGGING_ARGS, expected any of ${LOG_LEVEL_LIST[@]}"
+                echo "Invalid logging arg $LOGGING_ARGS, expected any of ${LOG_LEVEL_LIST[*]}"
                 exit 1
             fi
         fi
@@ -146,24 +146,26 @@ function loggingArgs {
 
 function cmakeArgs {
     # Check for multiple cmake args options
-    if [[ $(echo $ARGS | { grep -Eo "\-\-cmake\-args" || true; } | wc -l ) -gt 1 ]]; then
+    if [[ $(echo "$ARGS" | { grep -Eo "\-\-cmake\-args" || true; } | wc -l ) -gt 1 ]]; then
         echo "Multiple --cmake-args options were provided, please provide only one: ${ARGS}"
         exit 1
     fi
 
     # Check for cmake args option
-    if [[ -n $(echo $ARGS | { grep -E "\-\-cmake\-args" || true; } ) ]]; then
+    if [[ -n $(echo "$ARGS" | { grep -E "\-\-cmake\-args" || true; } ) ]]; then
         # There are possible weird edge cases that may cause this regex filter to output nothing and fail silently
         # the true pipe will catch any weird edge cases that may happen and will cause the program to fall back
         # on the invalid option error
-        EXTRA_CMAKE_ARGS=$(echo $ARGS | { grep -Eo "\-\-cmake\-args=\".+\"" || true; })
+        EXTRA_CMAKE_ARGS=$(echo "$ARGS" | { grep -Eo "\-\-cmake\-args=\".+\"" || true; })
         if [[ -n ${EXTRA_CMAKE_ARGS} ]]; then
             # Remove the full  EXTRA_CMAKE_ARGS argument from list of args so that it passes validArgs function
             ARGS=${ARGS//$EXTRA_CMAKE_ARGS/}
             # Filter the full argument down to just the extra string that will be added to cmake call
-            EXTRA_CMAKE_ARGS=$(echo $EXTRA_CMAKE_ARGS | grep -Eo "\".+\"" | sed -e 's/^"//' -e 's/"$//')
+            EXTRA_CMAKE_ARGS=$(echo "$EXTRA_CMAKE_ARGS" | grep -Eo "\".+\"" | sed -e 's/^"//' -e 's/"$//')
         fi
     fi
+
+    read -ra EXTRA_CMAKE_ARGS <<< "$EXTRA_CMAKE_ARGS"
 }
 
 
@@ -173,7 +175,7 @@ if hasArg -h || hasArg --help; then
 fi
 
 # Check for valid usage
-if (( ${NUMARGS} != 0 )); then
+if (( NUMARGS != 0 )); then
     cacheTool
     cmakeArgs
     loggingArgs
@@ -215,12 +217,27 @@ if hasArg --show_depr_warn; then
     BUILD_DISABLE_DEPRECATION_WARNING=OFF
 fi
 
+function contains_string {
+    local search_string="$1"
+    shift
+    local array=("$@")
+
+    for element in "${array[@]}"; do
+        if [[ "$element" == *"$search_string"* ]]; then
+            return 0
+        fi
+    done
+
+    return 1
+}
+
 # Append `-DFIND_CUOPT_CPP=ON` to CMAKE_ARGS unless a user specified the option.
-if [[ "${EXTRA_CMAKE_ARGS}" != *"DFIND_CUOPT_CPP"* ]]; then
-    EXTRA_CMAKE_ARGS="${EXTRA_CMAKE_ARGS} -DFIND_CUOPT_CPP=ON"
+if ! contains_string "DFIND_CUOPT_CPP" "${EXTRA_CMAKE_ARGS[@]}"; then
+    EXTRA_CMAKE_ARGS+=("-DFIND_CUOPT_CPP=ON")
 fi
-if [[ "${EXTRA_CMAKE_ARGS}" != *"DFIND_MPS_PARSER_CPP"* ]]; then
-    EXTRA_CMAKE_ARGS="${EXTRA_CMAKE_ARGS} -DFIND_MPS_PARSER_CPP=ON"
+
+if ! contains_string "DFIND_MPS_PARSER_CPP" "${EXTRA_CMAKE_ARGS[@]}"; then
+    EXTRA_CMAKE_ARGS+=("-DFIND_MPS_PARSER_CPP=ON")
 fi
 
 # If clean given, run it prior to any other steps
@@ -230,14 +247,14 @@ if hasArg clean; then
     # The find removes all contents but leaves the dirs, the rmdir
     # attempts to remove the dirs but can fail safely.
     for bd in ${BUILD_DIRS}; do
-        if [ -d ${bd} ]; then
-            find ${bd} -mindepth 1 -delete
-            rmdir ${bd} || true
+        if [ -d "${bd}" ]; then
+            find "${bd}" -mindepth 1 -delete
+            rmdir "${bd}" || true
         fi
     done
 
     # Cleaning up python artifacts
-    find ${REPODIR}/python/ | grep -E "(__pycache__|\.pyc|\.pyo|\.so|\_skbuild$)"  | xargs rm -rf
+    find "${REPODIR}"/python/ | grep -E "(__pycache__|\.pyc|\.pyo|\.so|\_skbuild$)"  | xargs rm -rf
 
 fi
 
@@ -249,7 +266,7 @@ fi
 if  [ ${BUILD_ALL_GPU_ARCH} -eq 1 ]; then
     CUOPT_CMAKE_CUDA_ARCHITECTURES="RAPIDS"
     echo "Building for *ALL* supported GPU architectures..."
-else 
+else
     if [ ${BUILD_CI_ONLY} -eq 1 ]; then
         if [[ ${CUDA_VERSION} == 11* ]]; then
             CUOPT_CMAKE_CUDA_ARCHITECTURES="70-real;80"
@@ -267,12 +284,12 @@ fi
 ################################################################################
 # Configure, build, and install libmps_parser
 if buildAll || hasArg libmps_parser; then
-    mkdir -p ${LIBMPS_PARSER_BUILD_DIR}
-    cd ${LIBMPS_PARSER_BUILD_DIR}
+    mkdir -p "${LIBMPS_PARSER_BUILD_DIR}"
+    cd "${LIBMPS_PARSER_BUILD_DIR}"
     cmake -DDEFINE_ASSERT=${DEFINE_ASSERT} \
-          -DCMAKE_INSTALL_PREFIX=${INSTALL_PREFIX} \
-          ${CACHE_ARGS} \
-          ${REPODIR}/cpp/libmps_parser/
+          -DCMAKE_INSTALL_PREFIX="${INSTALL_PREFIX}" \
+          "${CACHE_ARGS[@]}" \
+          "${REPODIR}"/cpp/libmps_parser/
 
     if hasArg -n; then
         cmake --build "${LIBMPS_PARSER_BUILD_DIR}" ${VERBOSE_FLAG}
@@ -284,61 +301,62 @@ fi
 ################################################################################
 # Configure, build, and install libcuopt
 if buildAll || hasArg libcuopt; then
-    mkdir -p ${LIBCUOPT_BUILD_DIR}
-    cd ${LIBCUOPT_BUILD_DIR}
+    mkdir -p "${LIBCUOPT_BUILD_DIR}"
+    cd "${LIBCUOPT_BUILD_DIR}"
     cmake -DDEFINE_ASSERT=${DEFINE_ASSERT} \
-          -DDEFINE_BENCHMARK=${DEFINE_BENCHMARK} \
+          -DDEFINE_BENCHMARK="${DEFINE_BENCHMARK}" \
           -DDEFINE_PDLP_VERBOSE_MODE=${DEFINE_PDLP_VERBOSE_MODE} \
-          -DLIBCUOPT_LOGGING_LEVEL=${LOGGING_ACTIVE_LEVEL} \
-          -DCMAKE_INSTALL_PREFIX=${INSTALL_PREFIX} \
+          -DLIBCUOPT_LOGGING_LEVEL="${LOGGING_ACTIVE_LEVEL}" \
+          -DCMAKE_INSTALL_PREFIX="${INSTALL_PREFIX}" \
           -DCMAKE_CUDA_ARCHITECTURES=${CUOPT_CMAKE_CUDA_ARCHITECTURES} \
           -DDISABLE_DEPRECATION_WARNING=${BUILD_DISABLE_DEPRECATION_WARNING} \
           -DCMAKE_BUILD_TYPE=${BUILD_TYPE} \
           -DFETCH_RAPIDS=${FETCH_RAPIDS} \
-          ${EXTRA_CMAKE_ARGS} \
-          ${REPODIR}/cpp
+          "${EXTRA_CMAKE_ARGS[@]}" \
+          "${REPODIR}"/cpp
     if hasArg -n; then
         cmake --build "${LIBCUOPT_BUILD_DIR}" ${VERBOSE_FLAG}
     else
-        cmake --build "${LIBCUOPT_BUILD_DIR}" --target ${INSTALL_TARGET} ${VERBOSE_FLAG} -j${PARALLEL_LEVEL}
+        cmake --build "${LIBCUOPT_BUILD_DIR}" --target ${INSTALL_TARGET} ${VERBOSE_FLAG} -j"${PARALLEL_LEVEL}"
     fi
 fi
 
 
 # Build and install the cuopt Python package
 if buildAll || hasArg cuopt; then
-    cd ${REPODIR}/python/cuopt
+    cd "${REPODIR}"/python/cuopt
 
-    SKBUILD_CMAKE_ARGS="-DCMAKE_PREFIX_PATH=${INSTALL_PREFIX};-DCMAKE_LIBRARY_PATH=${LIBCUOPT_BUILD_DIR};-DCMAKE_CUDA_ARCHITECTURES=${CUOPT_CMAKE_CUDA_ARCHITECTURES};${EXTRA_CMAKE_ARGS}" \
-        python ${PYTHON_ARGS_FOR_INSTALL} .
+    # $EXTRA_CMAKE_ARGS gets concatenated into a string with [*] and then we find/replace spaces with semi-colons
+    SKBUILD_CMAKE_ARGS="-DCMAKE_PREFIX_PATH=${INSTALL_PREFIX};-DCMAKE_LIBRARY_PATH=${LIBCUOPT_BUILD_DIR};-DCMAKE_CUDA_ARCHITECTURES=${CUOPT_CMAKE_CUDA_ARCHITECTURES};${EXTRA_CMAKE_ARGS[*]// /;}" \
+        python "${PYTHON_ARGS_FOR_INSTALL[@]}" .
 fi
 
 # Build and install the cuopt MPS parser Python package
 if buildAll || hasArg cuopt_mps_parser; then
-    cd ${REPODIR}/python/cuopt/cuopt/linear_programming
+    cd "${REPODIR}"/python/cuopt/cuopt/linear_programming
 
-    SKBUILD_CMAKE_ARGS="-DCMAKE_PREFIX_PATH=${INSTALL_PREFIX};-DCMAKE_LIBRARY_PATH=${LIBCUOPT_BUILD_DIR};-DCMAKE_CUDA_ARCHITECTURES=${CUOPT_CMAKE_CUDA_ARCHITECTURES};${EXTRA_CMAKE_ARGS}" \
-        python ${PYTHON_ARGS_FOR_INSTALL} .
+    SKBUILD_CMAKE_ARGS="-DCMAKE_PREFIX_PATH=${INSTALL_PREFIX};-DCMAKE_LIBRARY_PATH=${LIBCUOPT_BUILD_DIR};-DCMAKE_CUDA_ARCHITECTURES=${CUOPT_CMAKE_CUDA_ARCHITECTURES};${EXTRA_CMAKE_ARGS[*]// /;}" \
+        python "${PYTHON_ARGS_FOR_INSTALL[@]}" .
 fi
 
 # Build and install the cuopt_server Python package
 if buildAll || hasArg cuopt_server; then
-    cd ${REPODIR}/python/cuopt_server
-    python ${PYTHON_ARGS_FOR_INSTALL} .
+    cd "${REPODIR}"/python/cuopt_server
+    python "${PYTHON_ARGS_FOR_INSTALL[@]}" .
 fi
 
 # Build and install the cuopt_sh_client Python package
 if buildAll || hasArg cuopt_sh_client; then
-    cd ${REPODIR}/python/cuopt_self_hosted/
-    python ${PYTHON_ARGS_FOR_INSTALL} .
+    cd "${REPODIR}"/python/cuopt_self_hosted/
+    python "${PYTHON_ARGS_FOR_INSTALL[@]}" .
 fi
 
 # Build the docs
 if buildAll || hasArg docs; then
-    cd ${REPODIR}/cpp/doxygen
+    cd "${REPODIR}"/cpp/doxygen
     doxygen Doxyfile
 
-    cd ${REPODIR}/docs/cuopt
+    cd "${REPODIR}"/docs/cuopt
     make clean
     make html
 fi
diff --git a/datasets/get_test_data.sh b/datasets/get_test_data.sh
index 7d8f0edb5..a95ef830f 100755
--- a/datasets/get_test_data.sh
+++ b/datasets/get_test_data.sh
@@ -1,3 +1,4 @@
+#!/bin/bash
 # SPDX-FileCopyrightText: Copyright (c) 2021-2025 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
 # SPDX-License-Identifier: Apache-2.0
 #
@@ -86,7 +87,7 @@ ALL_DATASET_DATA="${TSP_DATASET_DATA} ${CVRP_DATASET_DATA} ${ACVRP_DATASET_DATA}
 NUMARGS=$#
 ARGS=$*
 function hasArg {
-    (( ${NUMARGS} != 0 )) && (echo " ${ARGS} " | grep -q " $1 ")
+    (( NUMARGS != 0 )) && (echo " ${ARGS} " | grep -q " $1 ")
 }
 
 if hasArg -h || hasArg --help; then
@@ -111,7 +112,9 @@ else
   DATASET_DATA="${ALL_DATASET_DATA}"
 fi
 
+# shellcheck disable=SC2207
 URLS=($(echo "$DATASET_DATA"|awk '{if (NR%4 == 3) print $0}'))  # extract 3rd fields to a bash array
+# shellcheck disable=SC2207
 DESTDIRS=($(echo "$DATASET_DATA"|awk '{if (NR%4 == 0) print $0}'))  # extract 4th fields to a bash array
 
 echo Downloading ...
@@ -121,7 +124,7 @@ rm -rf tmp
 mkdir tmp
 cd tmp
 # Loop through URLs with error handling
-for url in ${URLS[*]}; do
+for url in "${URLS[@]}"; do
     # Try up to 3 times with continue option
     wget -4 --tries=3 --continue --progress=dot:mega --retry-connrefused "${url}" || {
         echo "Failed to download: ${url}"
@@ -132,10 +135,10 @@ cd ..
 
 # Setup the destination dirs, removing any existing ones first!
 for index in ${!DESTDIRS[*]}; do
-    rm -rf ${DESTDIRS[$index]}
+    rm -rf "${DESTDIRS[$index]}"
 done
 for index in ${!DESTDIRS[*]}; do
-    mkdir -p ${DESTDIRS[$index]}
+    mkdir -p "${DESTDIRS[$index]}"
 done
 
 # Iterate over the arrays and untar the nth tarfile to the nth dest directory.
@@ -144,18 +147,18 @@ echo Decompressing ...
 set +e  # Disable exit on error for the entire script
 
 for index in ${!DESTDIRS[*]}; do
-    tfname=$(basename ${URLS[$index]})
+    tfname=$(basename "${URLS[$index]}")
 
-    if file --mime-type "tmp/${tfname}" | grep -q gzip$; then 
-        tar xvzf tmp/${tfname} -C ${DESTDIRS[$index]} || true
-    elif file --mime-type "tmp/${tfname}" | grep -q zip$; then 
-        unzip tmp/${tfname} -d ${DESTDIRS[$index]} || true
+    if file --mime-type "tmp/${tfname}" | grep -q gzip$; then
+        tar xvzf tmp/"${tfname}" -C "${DESTDIRS[$index]}" || true
+    elif file --mime-type "tmp/${tfname}" | grep -q zip$; then
+        unzip tmp/"${tfname}" -d "${DESTDIRS[$index]}" || true
     else
-        tar xvf tmp/${tfname} -C ${DESTDIRS[$index]} || true
+        tar xvf tmp/"${tfname}" -C "${DESTDIRS[$index]}" || true
     fi
 
-    if ls ${DESTDIRS[$index]}/*.gz >/dev/null 2>&1; then
-        gzip -d ${DESTDIRS[$index]}/* || true
+    if ls "${DESTDIRS[$index]}"/*.gz >/dev/null 2>&1; then
+        gzip -d "${DESTDIRS[$index]}"/* || true
     fi
 done
 
diff --git a/datasets/linear_programming/download_pdlp_test_dataset.sh b/datasets/linear_programming/download_pdlp_test_dataset.sh
index 0580298b1..1c4f47b5a 100755
--- a/datasets/linear_programming/download_pdlp_test_dataset.sh
+++ b/datasets/linear_programming/download_pdlp_test_dataset.sh
@@ -1,3 +1,4 @@
+#!/bin/bash
 # SPDX-FileCopyrightText: Copyright (c) 2021-2025 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
 # SPDX-License-Identifier: Apache-2.0
 #
@@ -13,10 +14,6 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-#!/bin/bash
-
-
-
 set -euo pipefail
 
 # 10 easiest Mittleman instances
diff --git a/datasets/mip/download_miplib_test_dataset.sh b/datasets/mip/download_miplib_test_dataset.sh
index 3aafc9d9c..d0eb0d2b9 100755
--- a/datasets/mip/download_miplib_test_dataset.sh
+++ b/datasets/mip/download_miplib_test_dataset.sh
@@ -1,3 +1,4 @@
+#!/bin/bash
 # SPDX-FileCopyrightText: Copyright (c) 2025 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
 # SPDX-License-Identifier: Apache-2.0
 #
@@ -13,8 +14,6 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-#!/bin/bash
-
 INSTANCES=(
     "50v-10"
     "fiball"
@@ -45,9 +44,8 @@ for INSTANCE in "${INSTANCES[@]}"; do
     OUTFILE="${BASEDIR}/${INSTANCE}.mps.gz"
 
     wget -4 --tries=3 --continue --progress=dot:mega --retry-connrefused "${URL}" -O "${OUTFILE}" || {
-        echo "Failed to download: ${url}"
+        echo "Failed to download: ${URL}"
         continue
     }
     gunzip -f "${OUTFILE}"
 done
-
diff --git a/datasets/mip/presolve_instance.sh b/datasets/mip/presolve_instance.sh
index a0a6604e2..c679b173f 100755
--- a/datasets/mip/presolve_instance.sh
+++ b/datasets/mip/presolve_instance.sh
@@ -1,3 +1,4 @@
+#!/bin/bash
 # SPDX-FileCopyrightText: Copyright (c) 2024-2025 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
 # SPDX-License-Identifier: Apache-2.0
 #
@@ -26,7 +27,6 @@
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
 # limitations under the License.
-#!/bin/bash
 for file in miplib2017/*
 do
   /home/scratch.acoerduek_sw/papilo/build/bin/papilo presolve -f $file -r reduced_$file
diff --git a/print_env.sh b/print_env.sh
index 0bfccbcba..b211542d8 100644
--- a/print_env.sh
+++ b/print_env.sh
@@ -1,3 +1,4 @@
+#!/bin/bash
 # SPDX-FileCopyrightText: Copyright (c) 2020-2025 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
 # SPDX-License-Identifier: Apache-2.0
 #
@@ -12,9 +13,7 @@
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
 # limitations under the License.
-
-#!/usr/bin/env bash
-# Copyright (c) 2020-2025, NVIDIA CORPORATION.
+#
 # Reports relevant environment information useful for diagnosing and
 # debugging cuOpt issues.
 # Usage:
@@ -100,4 +99,4 @@ echo "     "
 print_env | while read -r line; do
     echo "     $line"
 done
-echo "</pre></details>"
\ No newline at end of file
+echo "</pre></details>"
diff --git a/python/libcuopt/libcuopt/tests/test_cli.sh b/python/libcuopt/libcuopt/tests/test_cli.sh
index 6b217e123..49ccd48ce 100644
--- a/python/libcuopt/libcuopt/tests/test_cli.sh
+++ b/python/libcuopt/libcuopt/tests/test_cli.sh
@@ -18,7 +18,8 @@
 set -euo pipefail
 
 # Add cuopt_cli path to PATh variable
-export PATH="$(pyenv root)/versions/$(pyenv version-name)/bin:$PATH"
+PATH="$(pyenv root)/versions/$(pyenv version-name)/bin:$PATH"
+export PATH
 
 
 # Test the CLI
@@ -30,8 +31,8 @@ cuopt_cli --help | grep -q "Usage: cuopt_cli" || (echo "Expected usage informati
 
 # Run solver and check for optimal status - fail if not found
 
-cuopt_cli ${RAPIDS_DATASET_ROOT_DIR}/linear_programming/good-mps-1.mps | grep -q "Status: " || (echo "Expected solution not found" && exit 1)
+cuopt_cli "${RAPIDS_DATASET_ROOT_DIR}"/linear_programming/good-mps-1.mps | grep -q "Status: " || (echo "Expected solution not found" && exit 1)
 
 # Add a for mixed integer programming test with options
 
-cuopt_cli ${RAPIDS_DATASET_ROOT_DIR}/mip/sample.mps --mip-absolute-gap 0.01 --time-limit 10 | grep -q "Solution objective" || (echo "Expected solution objective not found" && exit 1)
+cuopt_cli "${RAPIDS_DATASET_ROOT_DIR}"/mip/sample.mps --mip-absolute-gap 0.01 --time-limit 10 | grep -q "Solution objective" || (echo "Expected solution objective not found" && exit 1)