From 959a7132c453016390ff0087c65754d16cf886fb Mon Sep 17 00:00:00 2001 From: Sharon Yates <30626642+sharoncy@users.noreply.github.com> Date: Fri, 15 Mar 2024 12:46:38 +0100 Subject: [PATCH] Update QuantifierOutput.rst --- docs/QuantifierOutput.rst | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/docs/QuantifierOutput.rst b/docs/QuantifierOutput.rst index b0fd7d5..48b0b30 100644 --- a/docs/QuantifierOutput.rst +++ b/docs/QuantifierOutput.rst @@ -48,8 +48,7 @@ Example :width: 5.88611in :height: 2.86512in -###Understanding reference atlas regions### - +### Understanding reference atlas regions ### Reference atlases are organised in systematic hierarchies that group related regions. This means that "parent" structures (e.g. cortical plate) are subdivided into "child" structures (e.g. isocortex, olfactory areas, hippocampal formation), which are further subdivided into "child" structures (e.g. hippocampal cell layers), etc. While the reports list all the region names in the reference atlas hierarchy, results are only reported for regions assigned to voxels in the atlas volume. This means that many regions report no results. These regions are either "parent" structures that have been delineated into smaller regions and are no longer assigned to voxels in the atlas volume, or "child" structures that have not been delineated yet (may come in future atlas releases). Regions with no results should be excluded from your analysis.