diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 82be48518fecc..ee50aeae26a1f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -20909,7 +20909,7 @@ with pkgs;
 
   simgrid = callPackage ../applications/science/misc/simgrid { };
 
-  spyder = pythonPackages.spyder;
+  spyder = callPackage ../applications/science/spyder { };
 
   stellarium = libsForQt5.callPackage ../applications/science/astronomy/stellarium { };
 
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 4ad513ac8e10d..dc65cb710188d 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -13381,8 +13381,6 @@ in {
     };
   });
 
-  spyder = callPackage ../applications/science/spyder { };
-
   sqlalchemy = callPackage ../development/python-modules/sqlalchemy { };
 
   SQLAlchemy-ImageAttach = buildPythonPackage rec {