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BOSC 2008 schedule
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You may also download the entire BOSC program with the schedule and all abstracts as a PDF file (1971KB).

Return to BOSC2008 main page.

Schedule (Day 1)

Friday, July 18

9:00-9:15

Kam Dahlquist (Chair BOSC

 2008)

Jason Stajich (President

 OBF)

[welcome] Open

 Bioinformatics Foundation Update **SLIDES**

9:15-10:15

Julian Lombardi

[keynote] Croquet: An Open Collaboration

 Architecture for Scientific Visualization and Simulation

10:15-10:45

Coffee Break

10:45-11:10

Hervé Ménager

[cyberinfrastructure]

 Mobyle: a New Full Web Bioinformatics Framework Abstract **SLIDES**

11:10-11:35

Richard Smith

[cyberinfrastructure]

 Intermine – Open Source Data Warehouse and Query Interface Abstract **SLIDES**

11:35-12:00

Paul Gordon

[cyberinfrastructure] Bridging

 Existing Bioinformatics Tools and Data into Semantic Web Services Abstract **SLIDES**

12:00-12:25

Peter Rice

[cyberinfrastructure]

 Soaplab2: More Reliable Sesame Door to Bioinformatics Programs Abstract

12:30-1:30

Lunch

1:30-1:50

Barry Sanders & David Arcoleo

[cyberinfrastructure]

 BeeSpace:  An Interactive System for
 Functional Analysis Abstract**SLIDES** (PPT)

1:50-2:10

Andrew Jenkinson

[cyberinfrastructure]

 BioDas Project Update Abstract  **SLIDES**

2:10-2:30

Kazuharu Arakawa

[visualization] E-Cell 3D: 3-Dimensional

 Visualization of Dynamic Cell Simulation Abstract **SLIDES**

2:30-2:50

Peter Rice

[bio*update] EMBOSS:

 European Molecular Biology Open Software Suite Abstract

2:50-3:10

Michael Heuer

[bio*update] BioJava

 Project Update Abstract **SLIDES**

3:10-3:18

Justin Wilson

[lightning talk] Use the

 Make Utility for the Maintenance of Complex Bioinformatics Pipelines Abstract **SLIDES** 

3:20-3:28

Brian O'Connor

[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework Abstract **SLIDES**

3:30-4:00

Coffee Break

4:00-5:30

Additional Lightning Talks/Demos/BOFs


Schedule (Day 2)

Saturday, July 19

9:00-9:05

Kam Dahlquist

Announcements

9:05-9:30

Mark Wilkinson

[workflows] Interoperability

 with BioMoby – Past, Present, and Future Abstract

9:30-9:55

Joshua Orvis

[workflows] Ergatis: A

 Web-based Bioinformatics Pipeline Management and Collaborative Development
 System Abstract

9:55-10:15

Aleksi Kallio

[workflows] Chipster – User

 Friendly DNA Microarray Analysis Software Abstract **SLIDES**

10:15-10:45

Coffee Break

10:45-11:10

Jiten Bhagat

[workflows] myExperiment:

 Social Software for Sharing Workflows Abstract **SLIDES**

11:10-11:30

Todd Smith

[workflows] BioHDF: Open Binary

 File Formats for Large Scale Data Management Abstract **SLIDES**

11:30-11:50

Aaron Kitzmiller

[open source software] The

 Open HeliSphereTM Project: True Open Source from the Inventors of
 True Single Molecule Sequencing Abstract **SLIDES**

11:50-12:10

Ed Lee

[open source software]

 Apollo: a Sequence Annotation Editor (with demonstration to follow) Abstract **SLIDES**

12:30-1:30

Lunch

1:30-1:50

Hilmar Lapp

[bio*update] BioSQL

 Reloaded: 1.0 Release, PhyloDB Module, and Future Features Abstract **SLIDES**

1:50-2:10

Syed Haider

[bio*update] EMBRACE –

 BioMart Developments and Future Abstract **SLIDES**

2:10-2:30

Tiago Antão

[bio*update] Biopython

 Project Update 2008 Abstract **SLIDES**

2:30-2:38

Scott Cain

[lightning talk] GMOD

2:38-2:46

Kannan Vijayan & Dustin Cram

[lightning talk] Fiesta

2:46-2:54

Ben Faga

[lightning talk] CMap: A Comparative Viewer **SLIDES**

2:54-3:02

John Greene

[lightning talk] ERIC: Enteropathogen Resource Information Center **SLIDES**

3:02-3:10

Aaron J. Mackey

[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl **SLIDES**

3:10-3:18

Saravanamuttu Gnaneshan

[lightning talk] Web Application Developments with Open Bio in Public health Informatics **SLIDES**

3:18-3:26

Pjotr Prins (in absentia)

[lightning talk] BioLib **SLIDES**

3:26-3:30

Gregg Helt

[lightning talk] Exploratory Analysis with DAS/2 and the Integrated Genome Browser (IGB)

3:30-4:00

Coffee Break

4:00-5:30

Lightning Talks/Demos/BOFs

[demo] Ergatis - Joshua Orvis

[lightning talk] Genographer - Travis Banks **SLIDES**

[BOFs] See BOSC_2008/Birds-of-a-Feather

Return to BOSC2008 main page.