- fix importAtlasCohorts => use RJSONIO with digits
- change all keyring fns to use only db.
- update function to review credentials
- fix and simplify cohortManifest function #26
- fix migration bug #25
- correct start_study vignette
- add fix in initConfig
- Add functions to import credentials
- Add functions to import ATLAS assets
- Write vignettes to creds and ATLAS
- add folder cohorts/conceptSets/json
- Finalize Directory
- Finalize meta fields for _study.yml
- Reconfigure
newOhdsiStudy()
with better meta inputs - Add functions to interface with _study.yml
- Reroute makeFiles to directory and meta fields
- Add
makeMigrationsScript()
template - Update study hub website format
- Update vignette
- add study hub builder
- convert all documents to qmd
- add functions to define study settings prior to build
- add cohort functions
cohortManifest
lists cohorts used in studymakeCohortDetails
renders human-readable file to convey cohort definitions- add versioning to cohort definitions
- Add keyring functions and update SetupKeyring.R template
- Update repository request email template
- Add git function to publish repo to remote
- Fix bugs in HowToRun and KeyringSetup template
- Add initial functionality
- file templates for:
- Analysis script
- Cohort Details
- Contribution Guidelines
- Example Script
- How to run
- Internal function file
- Meeting minutes
- News
- Email templates
- Readme
- Results report
- Study Protocol
- Study SAP
- Config.yml
- initialize ohdsi study in R
- file templates for:
- Added a
NEWS.md
file to track changes to the package.