CI #92
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name: "CI" | |
on: | |
pull_request: | |
branches: | |
- main | |
push: | |
branches: | |
- main | |
schedule: | |
# At 07:00 UTC on Monday and Thursday. | |
- cron: "0 7 * * *" | |
workflow_dispatch: | |
defaults: | |
run: | |
shell: bash -leo pipefail {0} | |
jobs: | |
tests: | |
runs-on: ${{ matrix.os}} | |
name: "π»-${{matrix.os }} π-${{ matrix.python-version }}" | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest", "macos-latest", "macos-13"] | |
python-version: | |
- "3.9" | |
- "3.10" | |
- "3.11" | |
- "3.12" | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: "Setup Micromamba" | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: environment.yml | |
environment-name: openfe_analysis_env | |
cache-environment: true | |
cache-downloads: true | |
create-args: >- | |
python=${{ matrix.python-version }} | |
init-shell: bash | |
- name: "Install" | |
run: | | |
python -m pip install --no-deps . | |
- name: "Restore pooch test data cache" | |
id: cache-testdata-restore | |
uses: actions/cache/restore@v3 | |
with: | |
path: | | |
~/.cache/openfe_analysis/ | |
key: ${{ runner.os }} | |
- name: "Test imports" | |
run: | | |
python -Ic "import openfe_analysis; print(openfe_analysis.__version__)" | |
- name: "Run tests" | |
run: | | |
pytest -n auto -v --cov=openfe_analysis --cov-report=xml --durations=10 | |
- name: "Save pooch test data cache" | |
id: cache-testdata-save | |
uses: actions/cache/save@v3 | |
with: | |
path: | | |
~/.cache/openfe_analysis/ | |
key: ${{ runner.os }} | |
- name: codecov | |
if: ${{ github.repository == 'OpenFreeEnergy/openfe_analysis' | |
&& github.event_name == 'pull_request' }} | |
uses: codecov/codecov-action@v4 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
file: coverage.xml | |
fail_ci_if_error: false | |
verbose: true |