From 416feb27e489dfbb15902d7497a7c62f3e38b2bc Mon Sep 17 00:00:00 2001 From: Florent Yvon Date: Fri, 26 Apr 2024 19:12:41 +0100 Subject: [PATCH] Added 2 terms to categories so that ischemic stroke get categorised properly --- release/scripts/UpdateEFO.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/release/scripts/UpdateEFO.py b/release/scripts/UpdateEFO.py index ec605e27..7ee13a40 100644 --- a/release/scripts/UpdateEFO.py +++ b/release/scripts/UpdateEFO.py @@ -24,7 +24,7 @@ class UpdateEFO: 'Biological process': { colour_key: '#BEBADA', parent_key: 'biological process', efo_key: ['GO_0008150'] }, 'Body measurement': { colour_key: '#66CCFF', parent_key: 'body weights and measures', efo_key: ['EFO_0004324'] }, 'Cancer': { colour_key: '#BC80BD', parent_key: 'neoplasm', efo_key: ['EFO_0000616'] }, - 'Cardiovascular disease': { colour_key: '#B33232', parent_key: 'cardiovascular disease', efo_key: ['EFO_0000319'] }, + 'Cardiovascular disease': { colour_key: '#B33232', parent_key: 'cardiovascular disease', efo_key: ['EFO_0000319', 'HP_0001626'] }, 'Cardiovascular measurement': { colour_key: '#80B1D3', parent_key: 'cardiovascular measurement', efo_key: ['EFO_0004298'] }, 'Digestive system disorder': { colour_key: '#B7704C', parent_key: 'digestive system disease', efo_key: ['EFO_0000405'] }, 'Hematological measurement': { colour_key: '#8DD3C7', parent_key: 'hematological measurement', efo_key: ['EFO_0004503'] }, @@ -33,7 +33,7 @@ class UpdateEFO: 'Lipid or lipoprotein measurement': { colour_key: '#B3DE69', parent_key: 'lipid or lipoprotein measurement', efo_key: ['EFO_0004529','EFO_0004732','EFO_0005105'] }, 'Liver enzyme measurement': { colour_key: '#669900', parent_key: 'liver enzyme measurement', efo_key: ['EFO_0004582'] }, 'Metabolic disorder': { colour_key: '#FDB462', parent_key: 'metabolic disease', efo_key: ['EFO_0000589'] }, - 'Neurological disorder': { colour_key: '#FFFFB3', parent_key: 'nervous system disease', efo_key: ['EFO_0000618'] }, + 'Neurological disorder': { colour_key: '#FFFFB3', parent_key: 'nervous system disease', efo_key: ['EFO_0000618', 'HP_0000707'] }, 'Other disease': { colour_key: '#FF3399', parent_key: 'disease', efo_key: ['EFO_0000408'] }, 'Other measurement': { colour_key: '#006699', parent_key: 'measurement', efo_key: ['EFO_0001444'] }, 'Other trait': { colour_key: '#FB8072', parent_key: 'experimental factor', efo_key: ['EFO_0000001'] },