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update for 0.2.3
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@jrharting
jrharting committed Jan 4, 2024
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### Type HLA from MHC assembled contigs
`call-contigs` requires 2 or 3 input files and an output directory:
* Assembled contigs aligned to GRCH38 (no alts)
* Assembled contigs must be aligned to [GRCH38 no alts](ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz)
* Assembled haplotype fasta[.gz] files (1 or 2)

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