diff --git a/Jenkinsfile b/Jenkinsfile
new file mode 100644
index 0000000..ab16dc5
--- /dev/null
+++ b/Jenkinsfile
@@ -0,0 +1,30 @@
+pipeline {
+    agent any
+
+    stages {
+        stage('Checkout Code') {
+            steps {
+                    // Checkout the repository
+                checkout scm
+            }
+        }
+
+        stage('Run Pipeline') {
+            steps {
+                    // Run the Nextflow pipeline
+                sh 'nextflow run main.nf -profile conda -params-file params.mm.json'
+
+            }
+        }
+    }
+
+    post {
+        success {
+            echo "Pipeline ran successfully!"
+        }
+
+        failure {
+            echo "Pipeline failed!"
+        }
+    }
+}
\ No newline at end of file