From a172280baf75f0c338e1e4ecf4ebfa96e8e006c2 Mon Sep 17 00:00:00 2001 From: semantic-release-bot Date: Fri, 19 Jul 2024 05:18:30 +0100 Subject: [PATCH] chore(release): 2.14.0 ## [2.14.0](https://github.com/PharmGKB/PharmCAT/compare/v2.13.0...v2.14.0) (2024-07-19) ### Features * **data:** make all allele definitions import from PharmGKB ([47da939](https://github.com/PharmGKB/PharmCAT/commit/47da939f014e16fef32038c49e57ba0550cc42cb)) * **data:** update to PharmVar v6.1.3 ([e4b8fc2](https://github.com/PharmGKB/PharmCAT/commit/e4b8fc22b06e9d838453a43143b2a9f4dd48ddd7)) ### Bug Fixes * **data:** fix downloading new guidance data ([a1007c0](https://github.com/PharmGKB/PharmCAT/commit/a1007c09a40db247032e2cbb9d58e7e98d68994a)) * **diplotype-comparator:** update string delimiter ([e10a2ea](https://github.com/PharmGKB/PharmCAT/commit/e10a2ea83dbbce2511a91c6806959e9343c4ec88)) * **namedallelematcher:** fix exception thrown while sorting diplotype matches ([093f5b2](https://github.com/PharmGKB/PharmCAT/commit/093f5b29d3f24799fd247a69807f454a173e8f88)) * **namedallelematcher:** handle CYP2D6 and HLA outside calls with sub-alleles gracefully ([dcaa055](https://github.com/PharmGKB/PharmCAT/commit/dcaa05573400926573d5b02d84e30b043146a8e7)) * **reporter:** fix how allele presence phenotypes are shown in final report ([2f00c6c](https://github.com/PharmGKB/PharmCAT/commit/2f00c6c53118c757010e54c0a0b074bf066cb358)) * **reporter:** fix missing PMID in report citation data ([81a0df2](https://github.com/PharmGKB/PharmCAT/commit/81a0df250b59b12609075612d0bbe7af02dfe2c4)), closes [#187](https://github.com/PharmGKB/PharmCAT/issues/187) * **reporter:** fix multiple version check logic ([3af2726](https://github.com/PharmGKB/PharmCAT/commit/3af272650642a2dc15da080b1f92263d33b9fc46)) * **reporter:** fix phenotype check by querying only phenotype-related genes in an annotation ([b666953](https://github.com/PharmGKB/PharmCAT/commit/b666953b5e2b52ee71cebb33ff045f3173db7b9c)), closes [#180](https://github.com/PharmGKB/PharmCAT/issues/180) * **reporter:** warn if multiple versions found ([9bb2a55](https://github.com/PharmGKB/PharmCAT/commit/9bb2a5558a32dd6c8119444f19799409c2593a3e)) --- CHANGELOG.md | 21 +++++++++++++++++++++ docs/index.md | 2 +- package.json | 2 +- preprocessor/preprocessor/common.py | 2 +- 4 files changed, 24 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3ab476d7..799382cc 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,24 @@ +## [2.14.0](https://github.com/PharmGKB/PharmCAT/compare/v2.13.0...v2.14.0) (2024-07-19) + + +### Features + +* **data:** make all allele definitions import from PharmGKB ([47da939](https://github.com/PharmGKB/PharmCAT/commit/47da939f014e16fef32038c49e57ba0550cc42cb)) +* **data:** update to PharmVar v6.1.3 ([e4b8fc2](https://github.com/PharmGKB/PharmCAT/commit/e4b8fc22b06e9d838453a43143b2a9f4dd48ddd7)) + + +### Bug Fixes + +* **data:** fix downloading new guidance data ([a1007c0](https://github.com/PharmGKB/PharmCAT/commit/a1007c09a40db247032e2cbb9d58e7e98d68994a)) +* **diplotype-comparator:** update string delimiter ([e10a2ea](https://github.com/PharmGKB/PharmCAT/commit/e10a2ea83dbbce2511a91c6806959e9343c4ec88)) +* **namedallelematcher:** fix exception thrown while sorting diplotype matches ([093f5b2](https://github.com/PharmGKB/PharmCAT/commit/093f5b29d3f24799fd247a69807f454a173e8f88)) +* **namedallelematcher:** handle CYP2D6 and HLA outside calls with sub-alleles gracefully ([dcaa055](https://github.com/PharmGKB/PharmCAT/commit/dcaa05573400926573d5b02d84e30b043146a8e7)) +* **reporter:** fix how allele presence phenotypes are shown in final report ([2f00c6c](https://github.com/PharmGKB/PharmCAT/commit/2f00c6c53118c757010e54c0a0b074bf066cb358)) +* **reporter:** fix missing PMID in report citation data ([81a0df2](https://github.com/PharmGKB/PharmCAT/commit/81a0df250b59b12609075612d0bbe7af02dfe2c4)), closes [#187](https://github.com/PharmGKB/PharmCAT/issues/187) +* **reporter:** fix multiple version check logic ([3af2726](https://github.com/PharmGKB/PharmCAT/commit/3af272650642a2dc15da080b1f92263d33b9fc46)) +* **reporter:** fix phenotype check by querying only phenotype-related genes in an annotation ([b666953](https://github.com/PharmGKB/PharmCAT/commit/b666953b5e2b52ee71cebb33ff045f3173db7b9c)), closes [#180](https://github.com/PharmGKB/PharmCAT/issues/180) +* **reporter:** warn if multiple versions found ([9bb2a55](https://github.com/PharmGKB/PharmCAT/commit/9bb2a5558a32dd6c8119444f19799409c2593a3e)) + ## [2.13.0](https://github.com/PharmGKB/PharmCAT/compare/v2.12.0...v2.13.0) (2024-06-11) diff --git a/docs/index.md b/docs/index.md index 198954c0..c8014bd1 100644 --- a/docs/index.md +++ b/docs/index.md @@ -3,7 +3,7 @@ title: Home permalink: / nav_order: 1 # version is dynamically updated - DO NOT MODIFY MANUALLY -pharmcat_version: 2.13.0 +pharmcat_version: 2.14.0 --- # PharmCAT:
Pharmacogenomics Clinical Annotation Tool diff --git a/package.json b/package.json index 8f6d5368..318c6c36 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "pharmcat", - "version": "2.13.0", + "version": "2.14.0", "repository": { "type": "git", "url": "https://github.com/PharmGKB/PharmCAT.git" diff --git a/preprocessor/preprocessor/common.py b/preprocessor/preprocessor/common.py index 0a20c247..a0b3eb34 100644 --- a/preprocessor/preprocessor/common.py +++ b/preprocessor/preprocessor/common.py @@ -2,7 +2,7 @@ # version is dynamically updated - DO NOT MODIFY MANUALLY -PHARMCAT_VERSION = '2.13.0' +PHARMCAT_VERSION = '2.14.0' # expected tool versions MIN_BCFTOOLS_VERSION = '1.18'