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Since the old tutorial notebook has many potential issues, recently I rewrite a new pipeline to place the old notebook. The work is still in process and I will submit a formal PR after finishing it.

To do list:

  • inference script
  • DDP support for large dataset, such as task 03, 07, 08 and 10 for decathlon.
  • More doc strings.

Due to the forward function's changes of DynUNet, this commit
update the corresponding places, as well as the loss calculation
for trainer.

In addition, the DiceCEloss has been implemented in MONAI, thus the
self-designed loss function part has also been updated.

Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
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@yiheng-wang-nv yiheng-wang-nv changed the title 106 update dynunet 106 update dynunet (new pipeline) Feb 26, 2021
@yiheng-wang-nv yiheng-wang-nv changed the title 106 update dynunet (new pipeline) Add new pipeline of DynUNet Feb 26, 2021
@yiheng-wang-nv
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yiheng-wang-nv commented Feb 26, 2021

This PR is closed in order to decouple with #126, I'll create a new branch for the new pipeline and submit a new PR.

@wyli wyli deleted the 106-update-dynunet branch April 20, 2021 14:17
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2 participants