From be68618ca3d75516cea1f31bdc9f53a7dd3505be Mon Sep 17 00:00:00 2001
From: Zargham Ahmad <zargham.ahmad12@gmail.com>
Date: Tue, 23 Jul 2024 23:10:30 +0200
Subject: [PATCH] added group value for standard

---
 tools/waveica/waveica.xml       | 2 +-
 tools/waveica/waveica_wrapper.R | 1 +
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/tools/waveica/waveica.xml b/tools/waveica/waveica.xml
index d8756e76..53f3bc46 100644
--- a/tools/waveica/waveica.xml
+++ b/tools/waveica/waveica.xml
@@ -1,4 +1,4 @@
-<tool id="waveica" name="WaveICA" version="@TOOL_VERSION@+galaxy7" profile="21.09">
+<tool id="waveica" name="WaveICA" version="@TOOL_VERSION@+galaxy8" profile="21.09">
     <description>removal of batch effects for untargeted metabolomics data</description>
     <macros>
         <import>macros.xml</import>
diff --git a/tools/waveica/waveica_wrapper.R b/tools/waveica/waveica_wrapper.R
index 875982ac..8a483b86 100644
--- a/tools/waveica/waveica_wrapper.R
+++ b/tools/waveica/waveica_wrapper.R
@@ -194,6 +194,7 @@ enumerate_groups <- function(group) {
     group[grepl("blank", tolower(group))] <- 0
     group[grepl("sample", tolower(group))] <- 1
     group[grepl("qc", tolower(group))] <- 2
+    group[grepl("standard", tolower(group))] <- 3
 
     return(group)
 }