diff --git a/.github/workflows/apply-clang-format.yml b/.github/workflows/apply-clang-format.yml deleted file mode 100644 index 5d0389b7e..000000000 --- a/.github/workflows/apply-clang-format.yml +++ /dev/null @@ -1,15 +0,0 @@ -name: Apply clang-format to PR - -on: - pull_request: - types: [labeled] - -jobs: - clang-format: - runs-on: ubuntu-latest - - steps: - - uses: actions/checkout@v1 - - uses: InsightSoftwareConsortium/ITKApplyClangFormatAction@testing - with: - github-token: ${{ secrets.GITHUB_TOKEN }} \ No newline at end of file diff --git a/.github/workflows/build-test-cxx-cuda.yml b/.github/workflows/build-test-cxx-cuda.yml deleted file mode 100644 index cb88feba4..000000000 --- a/.github/workflows/build-test-cxx-cuda.yml +++ /dev/null @@ -1,165 +0,0 @@ -name: 'Build, Test RTK with CUDA' - -on: [push,pull_request] - -env: - itk-git-tag: "v5.4.0" - itk-module-deps: "CudaCommon@v1.1.0" - -jobs: - build-test-cxx: - runs-on: ${{ matrix.os }} - strategy: - max-parallel: 3 - matrix: - os: [self-hosted-linux, self-hosted-windows] - include: - - os: self-hosted-linux - c-compiler: "gcc" - cxx-compiler: "g++" - cmake-build-type: "MinSizeRel" - - os: self-hosted-windows - c-compiler: "cl.exe" - cxx-compiler: "cl.exe" - cmake-build-type: "Release" - - steps: - - uses: actions/checkout@v3 - - - name: Install build dependencies - run: | - python -m pip install --upgrade pip - python -m pip install ninja - - - name: Get specific version of CMake, Ninja - uses: lukka/get-cmake@v3.24.2 - - - name: self-hosted cleanup - shell: bash - run: | - rm -fr ../ITK - rm -fr ../ITK-build - rm -fr ../build - - - name: Download ITK - run: | - cd .. - git clone https://github.com/InsightSoftwareConsortium/ITK.git - cd ITK - git checkout ${{ env.itk-git-tag }} - - - name: Build ITK - if: matrix.os != 'self-hosted-windows' - shell: bash - run: | - cd .. - mkdir ITK-build - cd ITK-build - MODULE_ARGS="" - MODULE_DEPS=${{ env.itk-module-deps }} - for MODULE_INFO in ${MODULE_DEPS//:/ }; do - MODULE_NAME=`(echo ${MODULE_INFO} | cut -d'@' -f 1)` - MODULE_ARGS="${MODULE_ARGS} -DModule_${MODULE_NAME}:BOOL=ON" - MODULE_TAG=`(echo ${MODULE_INFO} | cut -d'@' -f 2)` - if [[ -n ${MODULE_TAG} ]]; then - MODULE_ARGS+=" -DModule_${MODULE_NAME}_GIT_TAG:STRING=${MODULE_TAG}" - fi - done - if [[ -n $MODULE_ARGS ]]; then - echo "Building with modules: $MODULE_ARGS" - fi - - cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF ${{ env.itk-cmake-options }} ${MODULE_ARGS} -GNinja ../ITK - ninja - - - name: Build ITK - if: matrix.os == 'self-hosted-windows' - shell: pwsh - run: | - Set-PSDebug -Trace 1 - cd .. - & "C:\Program Files\Microsoft Visual Studio\2022\Community\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation - mkdir ITK-build - cd ITK-build - - $MODULE_ARGS="" - $MODULE_DEPS="${{ env.itk-module-deps }}" - $MODULES_LIST = $MODULE_DEPS.split(":") - foreach($MODULE_INFO in $MODULES_LIST) { - if($MODULE_ARGS) { $MODULE_ARGS += " " } - $MODULE_NAME = $MODULE_INFO.split("@")[0] - $MODULE_ARGS += "-DModule_$MODULE_NAME`:BOOL=ON" - $MODULE_TAG = $MODULE_INFO.split("@")[1] - if($MODULE_TAG) { - $MODULE_ARGS += " -DModule_$MODULE_NAME`_GIT_TAG:STRING=$MODULE_TAG" - } - } - - if($MODULE_ARGS) { - echo "Building with parameters: ${{ env.itk-cmake-options }} $MODULE_ARGS" - } - - cmake -DCMAKE_C_COMPILER:FILEPATH="${{ matrix.c-compiler }}" -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_CXX_COMPILER="${{ matrix.cxx-compiler }}" -DCMAKE_BUILD_TYPE:STRING=${{ matrix.cmake-build-type }} -DBUILD_TESTING:BOOL=OFF ${{ env.itk-cmake-options }} $MODULE_ARGS.split(" ") -GNinja ../ITK - ninja - - - name: Fetch CTest driver script - run: | - curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O - - - name: Configure CTest script - shell: bash - run: | - operating_system="${{ matrix.os }}" - cat > dashboard.cmake << EOF - set(CTEST_SITE "GitHubActions") - file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/.." CTEST_DASHBOARD_ROOT) - file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/" CTEST_SOURCE_DIRECTORY) - file(TO_CMAKE_PATH "\$ENV{GITHUB_WORKSPACE}/../build" CTEST_BINARY_DIRECTORY) - set(dashboard_source_name "${GITHUB_REPOSITORY}") - if((ENV{GITHUB_REF_NAME} MATCHES "master" OR ENV{GITHUB_REF_NAME} MATCHES "main")) - set(branch "-master") - set(dashboard_model "Continuous") - else() - set(branch "-${GITHUB_REF}") - set(dashboard_model "Experimental") - endif() - set(CTEST_BUILD_NAME "${GITHUB_REPOSITORY}-${operating_system}-\${branch}") - set(CTEST_UPDATE_VERSION_ONLY 1) - set(CTEST_TEST_ARGS \${CTEST_TEST_ARGS} PARALLEL_LEVEL \${PARALLEL_LEVEL}) - set(CTEST_BUILD_CONFIGURATION "Release") - set(CTEST_CMAKE_GENERATOR "Ninja") - set(CTEST_CUSTOM_WARNING_EXCEPTION - \${CTEST_CUSTOM_WARNING_EXCEPTION} - # macOS Azure VM Warning - "ld: warning: text-based stub file" - ${{ env.warnings-to-ignore }} - ) - set(dashboard_no_clean 1) - set(ENV{CC} ${{ matrix.c-compiler }}) - set(ENV{CXX} ${{ matrix.cxx-compiler }}) - if(WIN32) - set(ENV{PATH} "\${CTEST_DASHBOARD_ROOT}/ITK-build/bin;\$ENV{PATH}") - endif() - set(dashboard_cache " - ITK_DIR:PATH=\${CTEST_DASHBOARD_ROOT}/ITK-build - BUILD_TESTING:BOOL=ON - ${{ env.cmake-options }} - ") - string(TIMESTAMP build_date "%Y-%m-%d") - message("CDash Build Identifier: \${build_date} \${CTEST_BUILD_NAME}") - message("CTEST_SITE = \${CTEST_SITE}") - include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake) - EOF - cat dashboard.cmake - - - name: Build and test - if: matrix.os != 'self-hosted-windows' - run: | - ctest --output-on-failure -j 2 -V -S dashboard.cmake ${{ env.ctest-options }} - - - name: Build and test - if: matrix.os == 'self-hosted-windows' - shell: pwsh - run: | - & "C:\Program Files\Microsoft Visual Studio\2022\Community\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation - ctest --output-on-failure -j 2 -V -S dashboard.cmake ${{ env.ctest-options }} diff --git a/.github/workflows/build-test-package-python-cuda.yml b/.github/workflows/build-test-package-python-cuda.yml index 27e56f89f..ee316f660 100644 --- a/.github/workflows/build-test-package-python-cuda.yml +++ b/.github/workflows/build-test-package-python-cuda.yml @@ -4,7 +4,7 @@ on: [push,pull_request] env: itk-wheel-tag: 'v5.4.0' - itk-python-package-tag: '26495c927f31ea20616efe2b2bad05e9275ea3a5' + itk-python-package-tag: '11ece15e4932554656aa3d96cf812d4540b1ea50' itk-python-package-org: 'SimonRit' itk-module-deps: "RTKConsortium/ITKCudaCommon@v1.1.0" @@ -14,9 +14,9 @@ jobs: strategy: max-parallel: 2 matrix: - python3-minor-version: ["8","9","10","11"] - manylinux-platform: ["_2_28-x64","2014-x64"] - cuda-version: ["116","121"] + python3-minor-version: ["8"] + manylinux-platform: ["_2_28-x64"] + cuda-version: ["121"] steps: - uses: actions/checkout@v3 @@ -97,113 +97,3 @@ jobs: with: name: LinuxWheel3${{ matrix.python3-minor-version }}${{ matrix.manylinux-platform }}-cuda${{ matrix.cuda-version }} path: dist/*.whl - - build-windows-cuda-python-packages: - runs-on: self-hosted-windows - strategy: - max-parallel: 2 - matrix: - python3-minor-version: ["8","9","10","11"] - cuda-version: ["116","121"] - - steps: - - uses: actions/checkout@v4 - with: - path: "im" - - - name: 'Reduce source path length' - shell: bash - run: | - # Move ITKPythonBuilds archive to the checked-out source - if test -f ../../im/ITKPythonBuilds-windows.zip; then - mv ../../im/*.zip im - fi - rm -fr ../../im - - # Move checked-out source to a shorter path to avoid Windows path length issues - mv im ../../ - - - name: 'Fetch build script' - shell: pwsh - run: | - cd ../../im - $ITKPYTHONPACKAGE_TAG = "${{ env.itk-python-package-tag }}" - $ITKPYTHONPACKAGE_ORG = "${{ env.itk-python-package-org }}" - $SCRIPT_UPSTREAM = "https://raw.githubusercontent.com/$ITKPYTHONPACKAGE_ORG/ITKPythonPackage/$ITKPYTHONPACKAGE_TAG/scripts/windows-download-cache-and-build-module-wheels.ps1" - echo "Fetching $SCRIPT_UPSTREAM" - (new-object net.webclient).DownloadString($SCRIPT_UPSTREAM) > windows-download-cache-and-build-module-wheels.ps1 - - - name: 'Build 🐍 Python 📦 package' - shell: pwsh - run: | - if (Test-Path dist) { rm dist -r -fo } - - cd ../../im - & "C:\Program Files\Microsoft Visual Studio\2022\Community\Common7\Tools\Launch-VsDevShell.ps1" -Arch amd64 -SkipAutomaticLocation - $env:CC="cl.exe" - $env:CXX="cl.exe" - $env:ITK_PACKAGE_VERSION = "${{ env.itk-wheel-tag }}" - $env:ITKPYTHONPACKAGE_TAG = "${{ env.itk-python-package-tag }}" - $env:ITKPYTHONPACKAGE_ORG = "${{ env.itk-python-package-org }}" - $env:ITK_MODULE_PREQ = "${{ env.itk-module-deps }}" - $CUDA_VERSION = "${{ matrix.cuda-version }}" - $CUDA_VERSION_MAJOR=$CUDA_VERSION.substring(0,2) - $CUDA_VERSION_MINOR=$CUDA_VERSION.substring(2,$CUDA_VERSION.Length-2) - $env:CUDA_PATH = "C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v${CUDA_VERSION_MAJOR}.${CUDA_VERSION_MINOR}" - $env:CUDACXX = "$env:CUDA_PATH\bin\nvcc.exe" - $env:Path = "C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v${CUDA_VERSION_MAJOR}.${CUDA_VERSION_MINOR}\bin;" + $env:Path - $LIBCUDART= (Get-Item "C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v${CUDA_VERSION_MAJOR}.${CUDA_VERSION_MINOR}\bin\cudart64*dll" ).Name - $LIBCUBLAS= (Get-Item "C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v${CUDA_VERSION_MAJOR}.${CUDA_VERSION_MINOR}\bin\cublas64*dll" ).Name - $LIBCUBLASLT= (Get-Item "C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v${CUDA_VERSION_MAJOR}.${CUDA_VERSION_MINOR}\bin\cublasLt64*dll" ).Name - $LIBCUFFT= (Get-Item "C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v${CUDA_VERSION_MAJOR}.${CUDA_VERSION_MINOR}\bin\cufft64*dll" ).Name - ((Get-Content -Path pyproject.toml) -replace "itk-rtk","itk-rtk-cuda${CUDA_VERSION}") | Set-Content -Path pyproject.toml - ((Get-Content -Path pyproject.toml) -replace "dependencies = \[","dependencies = [""itk-cudacommon-cuda${CUDA_VERSION} == 1.1.*"",") | Set-Content -Path pyproject.toml - ./windows-download-cache-and-build-module-wheels.ps1 "${{ matrix.python3-minor-version }}" -setup_options "--lib-paths ""C:/Program\ Files/NVIDIA\ GPU\ Computing\ Toolkit/CUDA/v${CUDA_VERSION_MAJOR}.${CUDA_VERSION_MINOR}/bin"" --exclude-libs ""nvcuda.dll;concrt140.dll;${LIBCUDART};${LIBCUBLAS};${LIBCUBLASLT};${LIBCUFFT}""" -cmake_options """-DRTK_CUDA_VERSION=${CUDA_VERSION_MAJOR}.${CUDA_VERSION_MINOR}"" ""-DRTK_BUILD_APPLICATIONS:BOOL=OFF""" - - mkdir -p '${{ github.workspace }}\dist' - cp 'dist\*.whl' '${{ github.workspace }}\dist' - - - name: Validate build output - shell: pwsh - run: | - python -m pip install twine - ls dist/ - - $WHEEL_PATTERN = "dist/itk_*cp3${{ matrix.python3-minor-version }}*win*.whl" - echo "Searching for wheels matching pattern ${WHEEL_PATTERN}" - - python -m twine check ${WHEEL_PATTERN} - - - name: Publish Python package as GitHub Artifact - uses: actions/upload-artifact@v4 - with: - name: WindowsWheel3${{ matrix.python3-minor-version }}-cuda${{ matrix.cuda-version }} - path: dist/*.whl - - publish-python-packages-to-pypi: - needs: - - build-linux-cuda-python-packages - - build-windows-cuda-python-packages - runs-on: ubuntu-22.04 - - steps: - - name: Download Python Packages - uses: actions/download-artifact@v4 - - - name: Prepare packages for upload - run: | - ls -R - for d in */; do - mv ${d}/*.whl . - done - mkdir dist - mv *.whl dist/ - ls dist - - - name: Publish 🐍 Python 📦 package to PyPI - if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') - uses: pypa/gh-action-pypi-publish@v1.5.1 - with: - skip_existing: true - user: __token__ - password: ${{ secrets.pypi_password }} diff --git a/.github/workflows/build-test-package.yml b/.github/workflows/build-test-package.yml deleted file mode 100644 index bda57ba87..000000000 --- a/.github/workflows/build-test-package.yml +++ /dev/null @@ -1,16 +0,0 @@ -name: Build, test, package - -on: [push,pull_request] - -jobs: - cxx-build-workflow: - uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-cxx.yml@v5.4.0 - - python-build-workflow: - uses: InsightSoftwareConsortium/ITKRemoteModuleBuildTestPackageAction/.github/workflows/build-test-package-python.yml@v5.4.0 - with: - cmake-options: '-DRTK_BUILD_APPLICATIONS:BOOL=OFF' - itk-python-package-org: 'SimonRit' - itk-python-package-tag: '26495c927f31ea20616efe2b2bad05e9275ea3a5' - secrets: - pypi_password: ${{ secrets.pypi_password }} diff --git a/.github/workflows/clang-format-linter.yml b/.github/workflows/clang-format-linter.yml deleted file mode 100644 index 899d579ef..000000000 --- a/.github/workflows/clang-format-linter.yml +++ /dev/null @@ -1,12 +0,0 @@ -name: clang-format linter - -on: [push,pull_request] - -jobs: - lint: - runs-on: ubuntu-latest - - steps: - - uses: actions/checkout@v3 - - - uses: InsightSoftwareConsortium/ITKClangFormatLinterAction@master