From 711ac5af9d19ae6bdeb7c24c1b54dd836db3cfa5 Mon Sep 17 00:00:00 2001 From: Kathleen Date: Wed, 10 Jul 2024 15:10:28 -0400 Subject: [PATCH] Improving the KL/AT in Phaors --- parsers/PHAROS/src/loadPHAROS.py | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/parsers/PHAROS/src/loadPHAROS.py b/parsers/PHAROS/src/loadPHAROS.py index 13e11d16..6b4a0368 100644 --- a/parsers/PHAROS/src/loadPHAROS.py +++ b/parsers/PHAROS/src/loadPHAROS.py @@ -63,16 +63,18 @@ class PHAROSLoader(SourceDataLoader): } # we might want more granularity here but for now it's one-to-one source with KL/AT + # we will need to develop a procedure for merging KL/AT moving forward PHAROS_KL_AT_lookup = { 'CTD': (PREDICATION, MANUAL_AGENT), 'DisGeNET': (NOT_PROVIDED, NOT_PROVIDED), 'DrugCentral Indication': (KNOWLEDGE_ASSERTION, MANUAL_AGENT), 'eRAM': (NOT_PROVIDED, NOT_PROVIDED), + # For more information about JensenLab Databases: DOI: https://doi.org/10.1093/database/baac019 'JensenLab Experiment TIGA': (PREDICATION, AUTOMATED_AGENT), - 'JensenLab Knowledge AmyCo': (NOT_PROVIDED, NOT_PROVIDED), - 'JensenLab Knowledge MedlinePlus': (NOT_PROVIDED, NOT_PROVIDED), - 'JensenLab Knowledge UniProtKB-KW': (NOT_PROVIDED, NOT_PROVIDED), - 'JensenLab Text Mining': (NOT_PROVIDED, NOT_PROVIDED), + 'JensenLab Knowledge AmyCo': (KNOWLEDGE_ASSERTION, MANUAL_AGENT), + 'JensenLab Knowledge MedlinePlus': (KNOWLEDGE_ASSERTION, MANUAL_AGENT), + 'JensenLab Knowledge UniProtKB-KW': (KNOWLEDGE_ASSERTION, MANUAL_VALIDATION_OF_AUTOMATED_AGENT), + 'JensenLab Text Mining': (NOT_PROVIDED, TEXT_MINING_AGENT), 'Monarch': (NOT_PROVIDED, NOT_PROVIDED), 'UniProt Disease': (KNOWLEDGE_ASSERTION, MANUAL_AGENT) }