diff --git a/packages/types/src/model.ts b/packages/types/src/model.ts
index 49e8e73edff..a21b763351b 100644
--- a/packages/types/src/model.ts
+++ b/packages/types/src/model.ts
@@ -111,6 +111,13 @@ export const modelInfoSchema = z.object({
 	supportsNativeTools: z.boolean().optional(),
 	// Default tool protocol preferred by this model (if not specified, falls back to capability/provider defaults)
 	defaultToolProtocol: z.enum(["xml", "native"]).optional(),
+	// Exclude specific native tools from being available (only applies to native protocol)
+	// These tools will be removed from the set of tools available to the model
+	excludedTools: z.array(z.string()).optional(),
+	// Include specific native tools (only applies to native protocol)
+	// These tools will be added if they belong to an allowed group in the current mode
+	// Cannot force-add tools from groups the mode doesn't allow
+	includedTools: z.array(z.string()).optional(),
 	/**
 	 * Service tiers with pricing information.
 	 * Each tier can have a name (for OpenAI service tiers) and pricing overrides.
diff --git a/src/core/prompts/tools/__tests__/filter-tools-for-mode.spec.ts b/src/core/prompts/tools/__tests__/filter-tools-for-mode.spec.ts
index 0eb7d506e87..60aaf14b217 100644
--- a/src/core/prompts/tools/__tests__/filter-tools-for-mode.spec.ts
+++ b/src/core/prompts/tools/__tests__/filter-tools-for-mode.spec.ts
@@ -1,7 +1,8 @@
-import { describe, it, expect } from "vitest"
+import { describe, it, expect, beforeEach, afterEach } from "vitest"
 import type OpenAI from "openai"
-import type { ModeConfig } from "@roo-code/types"
-import { filterNativeToolsForMode, filterMcpToolsForMode } from "../filter-tools-for-mode"
+import type { ModeConfig, ModelInfo } from "@roo-code/types"
+import { filterNativeToolsForMode, filterMcpToolsForMode, applyModelToolCustomization } from "../filter-tools-for-mode"
+import * as toolsModule from "../../../../shared/tools"
 
 describe("filterNativeToolsForMode", () => {
 	const mockNativeTools: OpenAI.Chat.ChatCompletionTool[] = [
@@ -467,4 +468,360 @@ describe("filterMcpToolsForMode", () => {
 		// Should include MCP tools since default mode has mcp group
 		expect(filtered.length).toBeGreaterThan(0)
 	})
+
+	describe("applyModelToolCustomization", () => {
+		const codeMode: ModeConfig = {
+			slug: "code",
+			name: "Code",
+			roleDefinition: "Test",
+			groups: ["read", "edit", "browser", "command", "mcp"] as const,
+		}
+
+		const architectMode: ModeConfig = {
+			slug: "architect",
+			name: "Architect",
+			roleDefinition: "Test",
+			groups: ["read", "browser", "mcp"] as const,
+		}
+
+		it("should return original tools when modelInfo is undefined", () => {
+			const tools = new Set(["read_file", "write_to_file", "apply_diff"])
+			const result = applyModelToolCustomization(tools, codeMode, undefined)
+			expect(result).toEqual(tools)
+		})
+
+		it("should exclude tools specified in excludedTools", () => {
+			const tools = new Set(["read_file", "write_to_file", "apply_diff"])
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				excludedTools: ["apply_diff"],
+			}
+			const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+			expect(result.has("read_file")).toBe(true)
+			expect(result.has("write_to_file")).toBe(true)
+			expect(result.has("apply_diff")).toBe(false)
+		})
+
+		it("should exclude multiple tools", () => {
+			const tools = new Set(["read_file", "write_to_file", "apply_diff", "execute_command"])
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				excludedTools: ["apply_diff", "write_to_file"],
+			}
+			const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+			expect(result.has("read_file")).toBe(true)
+			expect(result.has("execute_command")).toBe(true)
+			expect(result.has("write_to_file")).toBe(false)
+			expect(result.has("apply_diff")).toBe(false)
+		})
+
+		it("should include tools only if they belong to allowed groups", () => {
+			const tools = new Set(["read_file"])
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				includedTools: ["write_to_file", "apply_diff"], // Both in edit group
+			}
+			const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+			expect(result.has("read_file")).toBe(true)
+			expect(result.has("write_to_file")).toBe(true)
+			expect(result.has("apply_diff")).toBe(true)
+		})
+
+		it("should NOT include tools from groups not allowed by mode", () => {
+			const tools = new Set(["read_file"])
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				includedTools: ["write_to_file", "apply_diff"], // Edit group tools
+			}
+			// Architect mode doesn't have edit group
+			const result = applyModelToolCustomization(tools, architectMode, modelInfo)
+			expect(result.has("read_file")).toBe(true)
+			expect(result.has("write_to_file")).toBe(false) // Not in allowed groups
+			expect(result.has("apply_diff")).toBe(false) // Not in allowed groups
+		})
+
+		it("should apply both exclude and include operations", () => {
+			const tools = new Set(["read_file", "write_to_file", "apply_diff"])
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				excludedTools: ["apply_diff"],
+				includedTools: ["insert_content"], // Another edit tool
+			}
+			const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+			expect(result.has("read_file")).toBe(true)
+			expect(result.has("write_to_file")).toBe(true)
+			expect(result.has("apply_diff")).toBe(false) // Excluded
+			expect(result.has("insert_content")).toBe(true) // Included
+		})
+
+		it("should handle empty excludedTools and includedTools arrays", () => {
+			const tools = new Set(["read_file", "write_to_file"])
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				excludedTools: [],
+				includedTools: [],
+			}
+			const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+			expect(result).toEqual(tools)
+		})
+
+		it("should ignore excluded tools that are not in the original set", () => {
+			const tools = new Set(["read_file", "write_to_file"])
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				excludedTools: ["apply_diff", "nonexistent_tool"],
+			}
+			const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+			expect(result.has("read_file")).toBe(true)
+			expect(result.has("write_to_file")).toBe(true)
+			expect(result.size).toBe(2)
+		})
+
+		it("should NOT include customTools by default", () => {
+			const tools = new Set(["read_file", "write_to_file"])
+			// Assume 'edit' group has a customTool defined in TOOL_GROUPS
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				// No includedTools specified
+			}
+			const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+			// customTools should not be in the result unless explicitly included
+			expect(result.has("read_file")).toBe(true)
+			expect(result.has("write_to_file")).toBe(true)
+		})
+
+		it("should NOT include tools that are not in any TOOL_GROUPS", () => {
+			const tools = new Set(["read_file"])
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				includedTools: ["my_custom_tool"], // Not in any tool group
+			}
+			const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+			expect(result.has("read_file")).toBe(true)
+			expect(result.has("my_custom_tool")).toBe(false)
+		})
+
+		it("should NOT include undefined tools even with allowed groups", () => {
+			const tools = new Set(["read_file"])
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				includedTools: ["custom_edit_tool"], // Not in any tool group
+			}
+			// Even though architect mode has read group, undefined tools are not added
+			const result = applyModelToolCustomization(tools, architectMode, modelInfo)
+			expect(result.has("read_file")).toBe(true)
+			expect(result.has("custom_edit_tool")).toBe(false)
+		})
+
+		describe("with customTools defined in TOOL_GROUPS", () => {
+			const originalToolGroups = { ...toolsModule.TOOL_GROUPS }
+
+			beforeEach(() => {
+				// Add a customTool to the edit group
+				;(toolsModule.TOOL_GROUPS as any).edit = {
+					...originalToolGroups.edit,
+					customTools: ["special_edit_tool"],
+				}
+			})
+
+			afterEach(() => {
+				// Restore original TOOL_GROUPS
+				;(toolsModule.TOOL_GROUPS as any).edit = originalToolGroups.edit
+			})
+
+			it("should include customTools when explicitly specified in includedTools", () => {
+				const tools = new Set(["read_file", "write_to_file"])
+				const modelInfo: ModelInfo = {
+					contextWindow: 100000,
+					supportsPromptCache: false,
+					includedTools: ["special_edit_tool"], // customTool from edit group
+				}
+				const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+				expect(result.has("read_file")).toBe(true)
+				expect(result.has("write_to_file")).toBe(true)
+				expect(result.has("special_edit_tool")).toBe(true) // customTool should be included
+			})
+
+			it("should NOT include customTools when not specified in includedTools", () => {
+				const tools = new Set(["read_file", "write_to_file"])
+				const modelInfo: ModelInfo = {
+					contextWindow: 100000,
+					supportsPromptCache: false,
+					// No includedTools specified
+				}
+				const result = applyModelToolCustomization(tools, codeMode, modelInfo)
+				expect(result.has("read_file")).toBe(true)
+				expect(result.has("write_to_file")).toBe(true)
+				expect(result.has("special_edit_tool")).toBe(false) // customTool should NOT be included by default
+			})
+
+			it("should NOT include customTools from groups not allowed by mode", () => {
+				const tools = new Set(["read_file"])
+				const modelInfo: ModelInfo = {
+					contextWindow: 100000,
+					supportsPromptCache: false,
+					includedTools: ["special_edit_tool"], // customTool from edit group
+				}
+				// Architect mode doesn't have edit group
+				const result = applyModelToolCustomization(tools, architectMode, modelInfo)
+				expect(result.has("read_file")).toBe(true)
+				expect(result.has("special_edit_tool")).toBe(false) // customTool should NOT be included
+			})
+		})
+	})
+
+	describe("filterNativeToolsForMode with model customization", () => {
+		const mockNativeTools: OpenAI.Chat.ChatCompletionTool[] = [
+			{
+				type: "function",
+				function: {
+					name: "read_file",
+					description: "Read files",
+					parameters: {},
+				},
+			},
+			{
+				type: "function",
+				function: {
+					name: "write_to_file",
+					description: "Write files",
+					parameters: {},
+				},
+			},
+			{
+				type: "function",
+				function: {
+					name: "apply_diff",
+					description: "Apply diff",
+					parameters: {},
+				},
+			},
+			{
+				type: "function",
+				function: {
+					name: "insert_content",
+					description: "Insert content",
+					parameters: {},
+				},
+			},
+			{
+				type: "function",
+				function: {
+					name: "execute_command",
+					description: "Execute command",
+					parameters: {},
+				},
+			},
+		]
+
+		it("should exclude tools when model specifies excludedTools", () => {
+			const codeMode: ModeConfig = {
+				slug: "code",
+				name: "Code",
+				roleDefinition: "Test",
+				groups: ["read", "edit", "browser", "command", "mcp"] as const,
+			}
+
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				excludedTools: ["apply_diff"],
+			}
+
+			const filtered = filterNativeToolsForMode(mockNativeTools, "code", [codeMode], {}, undefined, {
+				modelInfo,
+			})
+
+			const toolNames = filtered.map((t) => ("function" in t ? t.function.name : ""))
+
+			expect(toolNames).toContain("read_file")
+			expect(toolNames).toContain("write_to_file")
+			expect(toolNames).toContain("insert_content")
+			expect(toolNames).not.toContain("apply_diff") // Excluded by model
+		})
+
+		it("should include tools when model specifies includedTools from allowed groups", () => {
+			const modeWithOnlyRead: ModeConfig = {
+				slug: "limited",
+				name: "Limited",
+				roleDefinition: "Test",
+				groups: ["read", "edit"] as const,
+			}
+
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				includedTools: ["insert_content"], // Edit group tool
+			}
+
+			const filtered = filterNativeToolsForMode(mockNativeTools, "limited", [modeWithOnlyRead], {}, undefined, {
+				modelInfo,
+			})
+
+			const toolNames = filtered.map((t) => ("function" in t ? t.function.name : ""))
+
+			expect(toolNames).toContain("insert_content") // Included by model
+		})
+
+		it("should NOT include tools from groups not allowed by mode", () => {
+			const architectMode: ModeConfig = {
+				slug: "architect",
+				name: "Architect",
+				roleDefinition: "Test",
+				groups: ["read", "browser"] as const, // No edit group
+			}
+
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				includedTools: ["write_to_file", "apply_diff"], // Edit group tools
+			}
+
+			const filtered = filterNativeToolsForMode(mockNativeTools, "architect", [architectMode], {}, undefined, {
+				modelInfo,
+			})
+
+			const toolNames = filtered.map((t) => ("function" in t ? t.function.name : ""))
+
+			expect(toolNames).toContain("read_file")
+			expect(toolNames).not.toContain("write_to_file") // Not in mode's allowed groups
+			expect(toolNames).not.toContain("apply_diff") // Not in mode's allowed groups
+		})
+
+		it("should combine excludedTools and includedTools", () => {
+			const codeMode: ModeConfig = {
+				slug: "code",
+				name: "Code",
+				roleDefinition: "Test",
+				groups: ["read", "edit", "browser", "command", "mcp"] as const,
+			}
+
+			const modelInfo: ModelInfo = {
+				contextWindow: 100000,
+				supportsPromptCache: false,
+				excludedTools: ["apply_diff"],
+				includedTools: ["insert_content"],
+			}
+
+			const filtered = filterNativeToolsForMode(mockNativeTools, "code", [codeMode], {}, undefined, {
+				modelInfo,
+			})
+
+			const toolNames = filtered.map((t) => ("function" in t ? t.function.name : ""))
+
+			expect(toolNames).toContain("write_to_file")
+			expect(toolNames).toContain("insert_content") // Included
+			expect(toolNames).not.toContain("apply_diff") // Excluded
+		})
+	})
 })
diff --git a/src/core/prompts/tools/filter-tools-for-mode.ts b/src/core/prompts/tools/filter-tools-for-mode.ts
index c386240ddd1..3eec44c643f 100644
--- a/src/core/prompts/tools/filter-tools-for-mode.ts
+++ b/src/core/prompts/tools/filter-tools-for-mode.ts
@@ -1,5 +1,5 @@
 import type OpenAI from "openai"
-import type { ModeConfig, ToolName, ToolGroup } from "@roo-code/types"
+import type { ModeConfig, ToolName, ToolGroup, ModelInfo } from "@roo-code/types"
 import { getModeBySlug, getToolsForMode, isToolAllowedForMode } from "../../../shared/modes"
 import { TOOL_GROUPS, ALWAYS_AVAILABLE_TOOLS } from "../../../shared/tools"
 import { defaultModeSlug } from "../../../shared/modes"
@@ -7,7 +7,72 @@ import type { CodeIndexManager } from "../../../services/code-index/manager"
 import type { McpHub } from "../../../services/mcp/McpHub"
 
 /**
- * Filters native tools based on mode restrictions.
+ * Apply model-specific tool customization to a set of allowed tools.
+ *
+ * This function filters tools based on model configuration:
+ * 1. Removes tools specified in modelInfo.excludedTools
+ * 2. Adds tools from modelInfo.includedTools (only if they belong to allowed groups)
+ *
+ * @param allowedTools - Set of tools already allowed by mode configuration
+ * @param modeConfig - Current mode configuration to check tool groups
+ * @param modelInfo - Model configuration with tool customization
+ * @returns Modified set of tools after applying model customization
+ */
+export function applyModelToolCustomization(
+	allowedTools: Set<string>,
+	modeConfig: ModeConfig,
+	modelInfo?: ModelInfo,
+): Set<string> {
+	if (!modelInfo) {
+		return allowedTools
+	}
+
+	const result = new Set(allowedTools)
+
+	// Apply excluded tools (remove from allowed set)
+	if (modelInfo.excludedTools && modelInfo.excludedTools.length > 0) {
+		modelInfo.excludedTools.forEach((tool) => {
+			result.delete(tool)
+		})
+	}
+
+	// Apply included tools (add to allowed set, but only if they belong to an allowed group)
+	if (modelInfo.includedTools && modelInfo.includedTools.length > 0) {
+		// Build a map of tool -> group for all tools in TOOL_GROUPS (including customTools)
+		const toolToGroup = new Map<string, ToolGroup>()
+		for (const [groupName, groupConfig] of Object.entries(TOOL_GROUPS)) {
+			// Add regular tools
+			groupConfig.tools.forEach((tool) => {
+				toolToGroup.set(tool, groupName as ToolGroup)
+			})
+			// Add customTools (opt-in only tools)
+			if (groupConfig.customTools) {
+				groupConfig.customTools.forEach((tool) => {
+					toolToGroup.set(tool, groupName as ToolGroup)
+				})
+			}
+		}
+
+		// Get the list of allowed groups for this mode
+		const allowedGroups = new Set(
+			modeConfig.groups.map((groupEntry) => (Array.isArray(groupEntry) ? groupEntry[0] : groupEntry)),
+		)
+
+		// Add included tools only if they belong to an allowed group
+		// This includes both regular tools and customTools
+		modelInfo.includedTools.forEach((tool) => {
+			const toolGroup = toolToGroup.get(tool)
+			if (toolGroup && allowedGroups.has(toolGroup)) {
+				result.add(tool)
+			}
+		})
+	}
+
+	return result
+}
+
+/**
+ * Filters native tools based on mode restrictions and model customization.
  * This ensures native tools are filtered the same way XML tools are filtered in the system prompt.
  *
  * @param nativeTools - Array of all available native tools
@@ -15,7 +80,7 @@ import type { McpHub } from "../../../services/mcp/McpHub"
  * @param customModes - Custom mode configurations
  * @param experiments - Experiment flags
  * @param codeIndexManager - Code index manager for codebase_search feature check
- * @param settings - Additional settings for tool filtering
+ * @param settings - Additional settings for tool filtering (includes modelInfo for model-specific customization)
  * @param mcpHub - MCP hub for checking available resources
  * @returns Filtered array of tools allowed for the mode
  */
@@ -43,7 +108,7 @@ export function filterNativeToolsForMode(
 	const allToolsForMode = getToolsForMode(modeConfig.groups)
 
 	// Filter to only tools that pass permission checks
-	const allowedToolNames = new Set(
+	let allowedToolNames = new Set(
 		allToolsForMode.filter((tool) =>
 			isToolAllowedForMode(
 				tool as ToolName,
@@ -56,6 +121,10 @@ export function filterNativeToolsForMode(
 		),
 	)
 
+	// Apply model-specific tool customization
+	const modelInfo = settings?.modelInfo as ModelInfo | undefined
+	allowedToolNames = applyModelToolCustomization(allowedToolNames, modeConfig, modelInfo)
+
 	// Conditionally exclude codebase_search if feature is disabled or not configured
 	if (
 		!codeIndexManager ||
diff --git a/src/core/task/Task.ts b/src/core/task/Task.ts
index 04062797b50..74e55702fd1 100644
--- a/src/core/task/Task.ts
+++ b/src/core/task/Task.ts
@@ -3479,6 +3479,7 @@ export class Task extends EventEmitter<TaskEvents> implements TaskLike {
 				apiConfiguration,
 				maxReadFileLine: state?.maxReadFileLine ?? -1,
 				browserToolEnabled: state?.browserToolEnabled ?? true,
+				modelInfo,
 			})
 		}
 
diff --git a/src/core/task/build-tools.ts b/src/core/task/build-tools.ts
index a9f02005f09..4586e4b546b 100644
--- a/src/core/task/build-tools.ts
+++ b/src/core/task/build-tools.ts
@@ -1,5 +1,5 @@
 import type OpenAI from "openai"
-import type { ProviderSettings, ModeConfig } from "@roo-code/types"
+import type { ProviderSettings, ModeConfig, ModelInfo } from "@roo-code/types"
 import type { ClineProvider } from "../webview/ClineProvider"
 import { getNativeTools, getMcpServerTools } from "../prompts/tools/native-tools"
 import { filterNativeToolsForMode, filterMcpToolsForMode } from "../prompts/tools/filter-tools-for-mode"
@@ -13,6 +13,7 @@ interface BuildToolsOptions {
 	apiConfiguration: ProviderSettings | undefined
 	maxReadFileLine: number
 	browserToolEnabled: boolean
+	modelInfo?: ModelInfo
 }
 
 /**
@@ -23,8 +24,17 @@ interface BuildToolsOptions {
  * @returns Array of filtered native and MCP tools
  */
 export async function buildNativeToolsArray(options: BuildToolsOptions): Promise<OpenAI.Chat.ChatCompletionTool[]> {
-	const { provider, cwd, mode, customModes, experiments, apiConfiguration, maxReadFileLine, browserToolEnabled } =
-		options
+	const {
+		provider,
+		cwd,
+		mode,
+		customModes,
+		experiments,
+		apiConfiguration,
+		maxReadFileLine,
+		browserToolEnabled,
+		modelInfo,
+	} = options
 
 	const mcpHub = provider.getMcpHub()
 
@@ -36,6 +46,7 @@ export async function buildNativeToolsArray(options: BuildToolsOptions): Promise
 	const filterSettings = {
 		todoListEnabled: apiConfiguration?.todoListEnabled ?? true,
 		browserToolEnabled: browserToolEnabled ?? true,
+		modelInfo,
 	}
 
 	// Determine if partial reads are enabled based on maxReadFileLine setting
diff --git a/src/shared/modes.ts b/src/shared/modes.ts
index 484e79fd445..bbde43fd0ad 100644
--- a/src/shared/modes.ts
+++ b/src/shared/modes.ts
@@ -47,7 +47,7 @@ export function doesFileMatchRegex(filePath: string, pattern: string): boolean {
 export function getToolsForMode(groups: readonly GroupEntry[]): string[] {
 	const tools = new Set<string>()
 
-	// Add tools from each group
+	// Add tools from each group (excluding customTools which are opt-in only)
 	groups.forEach((group) => {
 		const groupName = getGroupName(group)
 		const groupConfig = TOOL_GROUPS[groupName]
diff --git a/src/shared/tools.ts b/src/shared/tools.ts
index 6aea5fd3114..7246931e63a 100644
--- a/src/shared/tools.ts
+++ b/src/shared/tools.ts
@@ -237,6 +237,7 @@ export interface GenerateImageToolUse extends ToolUse<"generate_image"> {
 export type ToolGroupConfig = {
 	tools: readonly string[]
 	alwaysAvailable?: boolean // Whether this group is always available and shouldn't show in prompts view
+	customTools?: readonly string[] // Opt-in only tools - only available when explicitly included via model's includedTools
 }
 
 export const TOOL_DISPLAY_NAMES: Record<ToolName, string> = {