Renovate: dependency jsonpickle to v4 #2706
Workflow file for this run
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# Copyright (c) University College London Hospitals NHS Foundation Trust | |
# | |
# Licensed under the Apache License, Version 2.0 (the "License"); | |
# you may not use this file except in compliance with the License. | |
# You may obtain a copy of the License at | |
# | |
# http://www.apache.org/licenses/LICENSE-2.0 | |
# | |
# Unless required by applicable law or agreed to in writing, software | |
# distributed under the License is distributed on an "AS IS" BASIS, | |
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
# See the License for the specific language governing permissions and | |
# limitations under the License. | |
name: pixl-ci | |
on: | |
push: | |
branches: | |
- main | |
- "renovate/**" | |
pull_request: | |
workflow_dispatch: | |
# Only run actions on the most recent push to a branch | |
concurrency: | |
group: "${{ github.workflow }}-${{ github.head_ref }}" | |
cancel-in-progress: true | |
jobs: | |
lint: | |
runs-on: ubuntu-24.04 | |
timeout-minutes: 5 | |
steps: | |
- name: Checkout | |
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4 | |
- name: Run pre-commit | |
uses: pre-commit/action@2c7b3805fd2a0fd8c1884dcaebf91fc102a13ecd # v3.0.1 | |
with: | |
extra_args: --all-files | |
- name: Validate Docker Compose config file | |
working-directory: . | |
run: | | |
cp .env.sample .env | |
docker compose config --quiet | |
test: | |
runs-on: ubuntu-24.04 | |
timeout-minutes: 30 | |
strategy: | |
fail-fast: false # run all tests if even if one fails | |
matrix: | |
package_dir: [pixl_core, hasher, pixl_dcmd, cli, pixl_export, pixl_imaging, pytest-pixl] | |
steps: | |
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4 | |
- name: Init Python | |
uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5 | |
with: | |
python-version: "3.11" | |
cache: "pip" | |
- name: Install Python dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install -e pytest-pixl/ | |
pip install -e pixl_core/[test] | |
pip install -e ${{ matrix.package_dir }}/[test] | |
- name: Run tests and generate coverage report | |
working-directory: ${{ matrix.package_dir }} | |
run: COV_CORE_SOURCE=src COV_CORE_CONFIG=.coveragerc COV_CORE_DATAFILE=.coverage.eager pytest --cov=src --cov-append --cov-report=xml --cov-report=term-missing | |
env: | |
ENV: test | |
AZURE_KEY_VAULT_NAME: test | |
AZURE_KEY_VAULT_SECRET_NAME: test | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673 # v4.5.0 | |
with: | |
directory: ${{ matrix.package_dir }} | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
system-test: | |
if: ${{ ! github.event.pull_request.draft || contains(github.event.pull_request.title, '[force-system-test]') }} | |
runs-on: ubuntu-24.04 | |
timeout-minutes: 30 | |
steps: | |
- uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4 | |
- uses: docker/setup-buildx-action@988b5a0280414f521da01fcc63a27aeeb4b104db # v3 | |
- name: Init Python | |
uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5 | |
with: | |
python-version: "3.11" | |
cache: "pip" | |
- name: Install Python dependencies | |
# The -e option is required here due to the way the | |
# code determines the export directory. See issue #318. | |
run: | | |
pip install -e pytest-pixl/ | |
pip install -e pixl_core/[test] | |
pip install -e cli/[test] | |
- name: Create .secrets.env | |
run: touch test/.secrets.env | |
- name: Build test services | |
working-directory: test | |
run: | | |
docker compose build | |
- name: Build services | |
run: | | |
docker compose build | |
- name: Run tests | |
working-directory: test | |
env: | |
EXPORT_AZ_CLIENT_ID: ${{ secrets.EXPORT_AZ_CLIENT_ID }} | |
EXPORT_AZ_CLIENT_PASSWORD: ${{ secrets.EXPORT_AZ_CLIENT_PASSWORD }} | |
EXPORT_AZ_TENANT_ID: ${{ secrets.EXPORT_AZ_TENANT_ID }} | |
EXPORT_AZ_KEY_VAULT_NAME: ${{ secrets.EXPORT_AZ_KEY_VAULT_NAME }} | |
HASHER_API_AZ_CLIENT_ID: ${{ secrets.EXPORT_AZ_CLIENT_ID }} | |
HASHER_API_AZ_CLIENT_PASSWORD: ${{ secrets.EXPORT_AZ_CLIENT_PASSWORD }} | |
HASHER_API_AZ_TENANT_ID: ${{ secrets.EXPORT_AZ_TENANT_ID }} | |
HASHER_API_AZ_KEY_VAULT_NAME: ${{ secrets.EXPORT_AZ_KEY_VAULT_NAME }} | |
run: | | |
./run-system-test.sh coverage | |
echo FINISHED SYSTEM TEST SCRIPT | |
- name: Dump queue docker logs for debugging | |
if: ${{ failure() }} | |
run: | | |
docker logs -t system-test-queue-1 2>&1 | |
- name: Dump postgres docker logs for debugging | |
if: ${{ failure() }} | |
run: | | |
docker logs -t system-test-postgres-1 2>&1 | |
- name: Dump imaging-api docker logs for debugging | |
if: ${{ failure() }} | |
run: | | |
docker logs -t system-test-imaging-api-1 2>&1 | |
- name: Dump orthanc-raw docker logs for debugging | |
if: ${{ failure() }} | |
run: | | |
docker logs -t system-test-orthanc-raw-1 2>&1 | |
- name: Dump orthanc-anon docker logs for debugging | |
if: ${{ failure() }} | |
run: | | |
docker logs -t system-test-orthanc-anon-1 2>&1 | |
- name: Dump hasher-api docker logs for debugging | |
if: ${{ failure() }} | |
run: | | |
docker logs -t system-test-hasher-api-1 2>&1 | |
- name: Dump export-api docker logs for debugging | |
if: ${{ failure() }} | |
run: | | |
docker logs -t system-test-export-api-1 2>&1 | |
- name: Dump VNA docker logs for debugging | |
if: ${{ failure() }} | |
run: | | |
docker logs -t system-test-vna-qr-1 2>&1 | |
- name: Dump DICOMWeb docker logs for debugging | |
if: ${{ failure() }} | |
run: | | |
docker logs -t system-test-dicomweb-server-1 2>&1 | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@e28ff129e5465c2c0dcc6f003fc735cb6ae0c673 # v4.5.0 | |
with: | |
directory: test | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |