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Dialogfenster für rename annotation #54

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merged 15 commits into from
Jun 25, 2021

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@paul0314 paul0314 commented Jun 18, 2021

Closes #40.

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lars-reimann commented Jun 18, 2021

Ich schließe den Pull Request kurz für Testzwecke.

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lars-reimann commented Jun 18, 2021

Noch zwei Beobachtungen, was die Funktionalität angeht:

  • Es ist völlig egal, wie man den Dialog schließt, der Wert im Eingabefeld wird immer gespeichert. Ich würde erwarten, dass dieser nur übernommen wird, wenn man auf "Submit" klickt.
  • Es findet keine Validierung der Eingabe statt. Auch Namen wie 1234, die in Python keine gültigen Identifier darstellen, werden akzeptiert. Siehe die Python Spezifikation für die erlaubte Syntax.

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Ich schließe den Pull Request kurz für Testzwecke.

lars-reimann and others added 4 commits June 20, 2021 12:59
# Conflicts:
#	client/src/Components/ParameterView/ParameterView.tsx
- in ParameterNode eventKeys durch einzelne Funktionen austauschen
- Schließen Bugs durch Regex Vergleich behoben
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User Feedback bei falscher Eingabe fehlt noch

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lars-reimann previously approved these changes Jun 25, 2021
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Reviewed & Approved

@Vengos Vengos merged commit 11f0d70 into master Jun 25, 2021
@Vengos Vengos deleted the Dialogfenster-für-Rename-Annotation branch June 25, 2021 10:36
lars-reimann pushed a commit that referenced this pull request Feb 10, 2022
* Extract boundaries with regex

* Write tests for extracting boundaries

* Categorize boundaries

* style: apply automatic fixes of linters

Co-authored-by: Dushko Klincharov <klincarov@halicea.com>
Co-authored-by: duklin <duklin@users.noreply.github.com>
lars-reimann added a commit that referenced this pull request Feb 10, 2022
* Initial commit

* chore: configure template

* chore: add starter code

* build: add numpydoc as dependency

* build: add spacy as dependency

* docs: installation of poetry

* docs: use Python 3.9

* feat: store source code of classes/functions and docstrings of classes/functions/parameters

* feat: store whether parameters as assigned by position or name or both

* build(deps): bump scikit-learn from 1.0 to 1.0.1 in /package_parser (#12)

Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.0 to 1.0.1.
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.0...1.0.1)

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* build(deps): bump spacy from 3.1.3 to 3.1.4 in /package_parser (#11)

Bumps [spacy](https://github.com/explosion/spaCy) from 3.1.3 to 3.1.4.
- [Release notes](https://github.com/explosion/spaCy/releases)
- [Commits](explosion/spaCy@v3.1.3...v3.1.4)

---
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  dependency-type: direct:production
  update-type: version-update:semver-patch
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* build(deps): bump amannn/action-semantic-pull-request (#8)

Bumps [amannn/action-semantic-pull-request](https://github.com/amannn/action-semantic-pull-request) from 3.4.2 to 3.4.6.
- [Release notes](https://github.com/amannn/action-semantic-pull-request/releases)
- [Changelog](https://github.com/amannn/action-semantic-pull-request/blob/master/CHANGELOG.md)
- [Commits](amannn/action-semantic-pull-request@v3.4.2...v3.4.6)

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- dependency-name: amannn/action-semantic-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* build(deps): bump astroid from 2.8.2 to 2.8.4 in /package_parser (#10)

Bumps [astroid](https://github.com/PyCQA/astroid) from 2.8.2 to 2.8.4.
- [Release notes](https://github.com/PyCQA/astroid/releases)
- [Changelog](https://github.com/PyCQA/astroid/blob/main/ChangeLog)
- [Commits](pylint-dev/astroid@v2.8.2...v2.8.4)

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- dependency-name: astroid
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* docs: remove community files that have a default

* ci: use reusable workflow to check format of PRs

* ci: update mega-linter

* ci: master -> main in mega-linter config

* feat: enhance extracted data for usage with API editor (#14)

* feat: add new fields to model

* fix: get everything running again

* feat: clean docstrings

* feat: extract imports and from-imports for modules

* fix: use qualified name of functions as key

* fix: some linter errors

* fix: remaining linter errors

* fix: duplicate imports in extracted API data

* fix: skip nested classes for now

* chore: add starting point for ontology development

* feat: handle properties correctly

Multiple functions with the same name can exist if they are marked with @Property, @x.setter, or @x.deleter. We, hence, need to refer to them by something other than their qualified name.

* feat: Python model classes for dependencies (#15)

* initial ontology commit

* 2 basic property subclass ideas

* added two more property subclasses

* moved ontology to predefined directory, fixed imports

* renamed property to dependency, added arithmetic dependency

* rework ontology model in code

* updated gitignore to ignore VSCode settings

* moved python-related changes to package_parser

* a stronger method for creating class instances instead of using a static method

* fixed potential lint error

* style: apply automatic fixes of linters

Co-authored-by: Aleksandr Sergeev <aleksandr.sergeev@tngtech.com>
Co-authored-by: aserge16 <aserge16@users.noreply.github.com>

* ci: disable bandit, flake8, pylint

* build(deps): bump spacy from 3.1.4 to 3.2.0 in /package_parser (#18)

Bumps [spacy](https://github.com/explosion/spaCy) from 3.1.4 to 3.2.0.
- [Release notes](https://github.com/explosion/spaCy/releases)
- [Commits](explosion/spaCy@v3.1.4...v3.2.0)

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  update-type: version-update:semver-minor
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* build(deps): bump importlib-metadata in /package_parser (#19)

Bumps [importlib-metadata](https://github.com/python/importlib_metadata) from 4.8.1 to 4.8.2.
- [Release notes](https://github.com/python/importlib_metadata/releases)
- [Changelog](https://github.com/python/importlib_metadata/blob/main/CHANGES.rst)
- [Commits](python/importlib_metadata@v4.8.1...v4.8.2)

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* build(deps): bump megalinter/megalinter from 5.0.5 to 5.2.0 (#16)

Bumps [megalinter/megalinter](https://github.com/megalinter/megalinter) from 5.0.5 to 5.2.0.
- [Release notes](https://github.com/megalinter/megalinter/releases)
- [Changelog](https://github.com/megalinter/megalinter/blob/main/CHANGELOG.md)
- [Commits](oxsecurity/megalinter@v5.0.5...v5.2.0)

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- dependency-name: megalinter/megalinter
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* ci: reusable workflow for MegaLinter

* ci: rename workflow

* build(deps): bump astroid from 2.8.4 to 2.9.0 in /package_parser (#17)

Bumps [astroid](https://github.com/PyCQA/astroid) from 2.8.4 to 2.9.0.
- [Release notes](https://github.com/PyCQA/astroid/releases)
- [Changelog](https://github.com/PyCQA/astroid/blob/main/ChangeLog)
- [Commits](pylint-dev/astroid@v2.8.4...v2.9.0)

---
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- dependency-name: astroid
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* test: setup pytest (#21)

* build: add pytest as dev dependency

* test: exemplary unit test

* build: add pytest-cov as dev dependency

* chore: ignore outputs of pytest

* ci: run pytest on pull requests or pushes to main

* build: use older structure for dev dependencies

* docs: add status badge to README

* chore: remove CODEOWNERS

* ci: pass PAT to reusable MegaLinter workflow

* chore: Manual extraction of enum types and boundaries (#28)

* Manual extraction of enum types and boundaries

* style: apply automatic fixes of linters

Co-authored-by: duklin <duklin@users.noreply.github.com>
Co-authored-by: Lars Reimann <mail@larsreimann.com>

* chore: Ontology structure proposal (#25)

* Ontology initialization

The ontology/sklearn.ttl file contains the following elements:
* Classes:
	Class
	Parameter
		StringParameter
		NumberParameter
			IntegerParameter
			FloatParameter
* Object Properties:
	hasParameter
	isParameterOf
* Data Property:
	canBe

* dependency ontology

* A root ontology file proposal

Co-authored-by: Aleksandr Sergeev <aleksandr.sergeev@tngtech.com>
Co-authored-by: Lars Reimann <mail@larsreimann.com>

* Add mypy as dev dependency to pyproject.toml (#31)

Co-authored-by: Dushko Klincharov <klincarov@halicea.com>

* build: update prettier-config

* feat: Extract enums from docstring's type attribute (#30)

* Extract enums from docstring's type attribute. Write tests for enum extraction

* Fix mypy errors and change return type of Parameter.extract_enum method

* style: apply automatic fixes of linters

* Provide JSON serialization for enum sets

* Cover enum type cases suggested by Lars

* Create new class for parameter enums, add more tests for extracting parameter enums from docstring type

* remove backslashes from enum type values

* style: apply automatic fixes of linters

Co-authored-by: Dushko Klincharov <klincarov@halicea.com>
Co-authored-by: duklin <duklin@users.noreply.github.com>
Co-authored-by: Lars Reimann <mail@larsreimann.com>

* feat: Dependencies (#32)

* initial ontology commit

* 2 basic property subclass ideas

* added two more property subclasses

* moved ontology to predefined directory, fixed imports

* renamed property to dependency, added arithmetic dependency

* rework ontology model in code

* updated gitignore to ignore VSCode settings

* moved python-related changes to package_parser

* a stronger method for creating class instances instead of using a static method

* fixed potential lint error

* added ontology file for dependencies

* initial commit dependency fetcher

* initial code commit

* playing code for spacy rules

* some extra ontology properties for depenencies

* Dependencies extract first commit

* removed playground code

* fixed check in preprocessing

* oops, check is correct now

* removed name==main at bottom of file

* Added new instances

* Added a case of !=

* reworked preprocessing and added test

* using regex for preprocessing, cleaner, thanks Lars

* removed unused import and added type hint for dict

* type hint fixed again

* style: apply automatic fixes of linters

Co-authored-by: Aleksandr Sergeev <aleksandr.sergeev@tngtech.com>
Co-authored-by: Prajakta Bhujbal <prajaktabhujbal7@gmail.com>
Co-authored-by: aserge16 <aserge16@users.noreply.github.com>
Co-authored-by: Lars Reimann <mail@larsreimann.com>

* build(deps): bump scikit-learn from 1.0.1 to 1.0.2 in /package_parser (#41)

Bumps [scikit-learn](https://github.com/scikit-learn/scikit-learn) from 1.0.1 to 1.0.2.
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.0.1...1.0.2)

---
updated-dependencies:
- dependency-name: scikit-learn
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* build(deps-dev): bump mypy from 0.910 to 0.930 in /package_parser (#39)

Bumps [mypy](https://github.com/python/mypy) from 0.910 to 0.930.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](python/mypy@v0.910...v0.930)

---
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- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
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* build(deps): bump spacy from 3.2.0 to 3.2.1 in /package_parser (#37)

Bumps [spacy](https://github.com/explosion/spaCy) from 3.2.0 to 3.2.1.
- [Release notes](https://github.com/explosion/spaCy/releases)
- [Commits](explosion/spaCy@v3.2.0...v3.2.1)

---
updated-dependencies:
- dependency-name: spacy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* build(deps): bump importlib-metadata in /package_parser (#38)

Bumps [importlib-metadata](https://github.com/python/importlib_metadata) from 4.8.2 to 4.10.0.
- [Release notes](https://github.com/python/importlib_metadata/releases)
- [Changelog](https://github.com/python/importlib_metadata/blob/main/CHANGES.rst)
- [Commits](python/importlib_metadata@v4.8.2...v4.10.0)

---
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- dependency-name: importlib-metadata
  dependency-type: direct:production
  update-type: version-update:semver-minor
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* feat: Dependencies (#42)

* initial ontology commit

* 2 basic property subclass ideas

* added two more property subclasses

* moved ontology to predefined directory, fixed imports

* renamed property to dependency, added arithmetic dependency

* rework ontology model in code

* updated gitignore to ignore VSCode settings

* moved python-related changes to package_parser

* a stronger method for creating class instances instead of using a static method

* fixed potential lint error

* added ontology file for dependencies

* initial commit dependency fetcher

* initial code commit

* playing code for spacy rules

* some extra ontology properties for depenencies

* Dependencies extract first commit

* removed playground code

* fixed check in preprocessing

* oops, check is correct now

* removed name==main at bottom of file

* Added new instances

* Added a case of !=

* reworked preprocessing and added test

* using regex for preprocessing, cleaner, thanks Lars

* removed unused import and added type hint for dict

* type hint fixed again

* Modified pattern for "nominal subject (passive)" and "prepositional modifier"

* #35 used pattern created

* #36 first extraction function implemented for the first pattern

* #35 ignored condition pattern added

* #36 dependency extraction function for ignored condition pattern

* added second case of action word having uppercase first letter

* added pattern parameter applies

* fix: mypy error

* style: apply automatic fixes of linters

Co-authored-by: Aleksandr Sergeev <aleksandr.sergeev@tngtech.com>
Co-authored-by: Prajakta Bhujbal <prajaktabhujbal7@gmail.com>
Co-authored-by: Lars Reimann <mail@larsreimann.com>
Co-authored-by: lars-reimann <lars-reimann@users.noreply.github.com>

* feat: Model refined types as dataclasses, introduce only one property in th… (#45)

* Model refined types as dataclasses, introduce only one property in the json output for the refined types

* style: apply automatic fixes of linters

Co-authored-by: Dushko Klincharov <klincarov@halicea.com>
Co-authored-by: duklin <duklin@users.noreply.github.com>

* build(deps): bump astroid from 2.9.0 to 2.9.1 in /package_parser (#40)

Bumps [astroid](https://github.com/PyCQA/astroid) from 2.9.0 to 2.9.1.
- [Release notes](https://github.com/PyCQA/astroid/releases)
- [Changelog](https://github.com/PyCQA/astroid/blob/main/ChangeLog)
- [Commits](pylint-dev/astroid@v2.9.0...v2.9.1)

---
updated-dependencies:
- dependency-name: astroid
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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* refactor: manually extracted refined types (#46)

* Refactor the manually extracted refined types for classes KMeans, PCA, TruncatedSVD, CountVectorizer and TfIdfVectorizer

* refactor refinedtypes for DecisionTreeClassifier

* refactor json for model_selection,neighbors,preprocessing,svm,tree

* refactoring for metrics,linearmodel,impute

* refactored json for feature_extraction

* updated BoundaryTypes and NamedTypes and the remaining classes

* Refactor manually extracted refined types for cluster, decomposition, ensemble

* Refactor manually extracted refined types for feature_extraction, impute and linear_model

* refactored manually extracted refined types for metrics,model_selection,neighbors,preprocessing,svm,tree

* Format the json files from the manual extraction of refined types

* Extract the boundary types in another json and the docstring part that is related to the boundary

* style: apply automatic fixes of linters

Co-authored-by: Dushko Klincharov <klincarov@halicea.com>
Co-authored-by: mmdoja <mmdoja@gmail.com>
Co-authored-by: duklin <duklin@users.noreply.github.com>

* feat: Action/Condition Classification (#48)

* #43 basic condtion and action extraction functions

* #43 corrected extractions, now matching occurs per sentence, removes many false positives

* #43 fixed recursive action extraction function

* Added new pattern

* #43 classifying of ignored parameter actions

* #43 conditions and actions are now dataclasses, renamed one condition

* #43 phrases to categories actions/conditions

* #43 mypy fixes

* style: apply automatic fixes of linters

* #43 renamed IDs in general SCONJ pattern

* #43 more descriptive pattern name

Co-authored-by: Aleksandr Sergeev <aleksandr.sergeev@tngtech.com>
Co-authored-by: prajakta <prajaktabhujbal7@gmail.com>
Co-authored-by: aserge16 <aserge16@users.noreply.github.com>

* ci: smoke test (#53)

* Update pr.yml

* test: add smoke test to main workflow

* ci: use poetry run instead

* test: Dependencies unit tests (#50)

* correctly formatted models to data classes

* updated model Names and added new phrases

* #49 dependency extraction function unit tests

* style: apply automatic fixes of linters

* fix: possible fix for build error

* added json dump of dependencies to CLI flow

* mypy fix

* style: apply automatic fixes of linters

* do the versions make a difference on dependency understanding?

* updated url for spacy langauge module

* quick fix, need to work on punctuation extraction

* removed hanging punctuation when extracting actions

* style: apply automatic fixes of linters

* test for dependency extraction class subordinating_conjuction

* style: apply automatic fixes of linters

* more documentation for functions

* style: apply automatic fixes of linters

* updated ontology to represent current code state

* removed pattern without implemented function for now

* added dependency README

Co-authored-by: Aleksandr Sergeev <aleksandr.sergeev@tngtech.com>
Co-authored-by: aserge16 <aserge16@users.noreply.github.com>
Co-authored-by: Lars Reimann <mail@larsreimann.com>

* feat: Boundary extraction (#54)

* Extract boundaries with regex

* Write tests for extracting boundaries

* Categorize boundaries

* style: apply automatic fixes of linters

Co-authored-by: Dushko Klincharov <klincarov@halicea.com>
Co-authored-by: duklin <duklin@users.noreply.github.com>

* build(deps): bump astroid from 2.9.1 to 2.9.3 in /package_parser (#58)

Bumps [astroid](https://github.com/PyCQA/astroid) from 2.9.1 to 2.9.3.
- [Release notes](https://github.com/PyCQA/astroid/releases)
- [Changelog](https://github.com/PyCQA/astroid/blob/main/ChangeLog)
- [Commits](pylint-dev/astroid@v2.9.1...v2.9.3)

---
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- dependency-name: astroid
  dependency-type: direct:production
  update-type: version-update:semver-patch
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* build(deps): bump importlib-metadata in /package_parser (#56)

Bumps [importlib-metadata](https://github.com/python/importlib_metadata) from 4.10.0 to 4.10.1.
- [Release notes](https://github.com/python/importlib_metadata/releases)
- [Changelog](https://github.com/python/importlib_metadata/blob/main/CHANGES.rst)
- [Commits](python/importlib_metadata@v4.10.0...v4.10.1)

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  update-type: version-update:semver-patch
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* build(deps-dev): bump mypy from 0.930 to 0.931 in /package_parser (#55)

Bumps [mypy](https://github.com/python/mypy) from 0.930 to 0.931.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](python/mypy@v0.930...v0.931)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
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* build(deps): bump numpydoc from 1.1.0 to 1.2 in /package_parser (#57)

Bumps [numpydoc](https://github.com/numpy/numpydoc) from 1.1.0 to 1.2.
- [Release notes](https://github.com/numpy/numpydoc/releases)
- [Changelog](https://github.com/numpy/numpydoc/blob/main/doc/release_notes.rst)
- [Commits](numpy/numpydoc@v1.1.0...numpydoc-1.2)

---
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- dependency-name: numpydoc
  dependency-type: direct:production
  update-type: version-update:semver-minor
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* feat: updated ontology to represent the current model (#65)

* updated ontology to represent the current model

* fix: updated ontology

* removed subclasses for UnionType

* feat: Dependencies updated README (#59)

* corrected pattern name

* updated readme with future work

* updated readme with instructions on how to add further patterns

* expected type correction

* updated test

* refactor: possible fix for mypy error

* refactor: another possible fix for mypy error

Co-authored-by: Aleksandr Sergeev <aleksandr.sergeev@tngtech.com>
Co-authored-by: Lars Reimann <mail@larsreimann.com>

* feat: integrate purity parser (#68)

* Initial prototype written with astroid as shown in last meeting (10.12.21)

* Update to ast file & node classes file

* Add files via upload

* Delete ast_example2.py

* Add files via upload

* State of ast visitor as discussed in meeting

* Add files via upload

* Some fixes to handlers of many ast nodes

* Added saving properties to lists for ontology integration

* Add files via upload

* Add files via upload

* Added comments, some fixes to certain nodes

* Delete PurityV1.owl

* Delete PurityV2.owl

* Add files via upload

* style: minor formatting changes

* style: apply automatic fixes of linters

Co-authored-by: Adrian Bajraktari <s6adbajr@uni-bonn.de>
Co-authored-by: BitaAfshar <93251213+BitaAfshar@users.noreply.github.com>
Co-authored-by: Lars Reimann <mail@larsreimann.com>
Co-authored-by: lars-reimann <lars-reimann@users.noreply.github.com>

* refactor: move everything into top-level folder

* refactor: remove duplicate or unnecessary files

* refactor: move api-editor files into new folder

* ci: fix paths

* build: make gradlew executable again

* build: some fixes for linter configuration

* build: re-enable ES Module interop

* style: apply automatic fixes of linters

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Aleksandr Sergeev <46769243+aserge16@users.noreply.github.com>
Co-authored-by: Aleksandr Sergeev <aleksandr.sergeev@tngtech.com>
Co-authored-by: aserge16 <aserge16@users.noreply.github.com>
Co-authored-by: Dushko Klincharov <klincharovdushko@gmail.com>
Co-authored-by: duklin <duklin@users.noreply.github.com>
Co-authored-by: Dushko Klincharov <klincarov@halicea.com>
Co-authored-by: Prajakta Bhujbal <prajaktabhujbal7@gmail.com>
Co-authored-by: lars-reimann <lars-reimann@users.noreply.github.com>
Co-authored-by: mmdoja <mmdoja@gmail.com>
Co-authored-by: Adrian Bajraktari <32750210+AdrianBajraktari@users.noreply.github.com>
Co-authored-by: Adrian Bajraktari <s6adbajr@uni-bonn.de>
Co-authored-by: BitaAfshar <93251213+BitaAfshar@users.noreply.github.com>
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