diff --git a/jobs/BGI_Paired_Fastq/job.json b/jobs/BGI_Paired_Fastq/job.json new file mode 100644 index 0000000..c2a8a8e --- /dev/null +++ b/jobs/BGI_Paired_Fastq/job.json @@ -0,0 +1,133 @@ +{ + "cwl_wf_url": "https://github.com/Sage-Bionetworks-Workflows/dockstore-workflow-rnaseq/tree/v1.1.2", + "cwl_args_url": "https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/dockstore-workflow-rnaseq/v1.1.2/jobs/BGI_Paired_Fastq/job.json", + "index_synapseid": "syn20645801", + "synapse_parentid": "syn23043869", + "nthreads": 15, + "synapse_config": { + "class": "File", + "path": "/etc/synapse/.synapseConfig" + }, + "synapseid": [ + "syn23037162", + "syn23037217", + "syn23037267", + "syn23037321", + "syn23037383", + "syn23037430", + "syn23037498", + "syn23037550", + "syn23037610", + "syn23037666", + "syn23037718", + "syn23037772", + "syn23037833", + "syn23037888", + "syn23037947", + "syn23038003", + "syn23038064", + "syn23038122", + "syn23038175", + "syn23038247", + "syn23038294", + "syn23038340", + "syn23038377", + "syn23038438", + "syn23035272", + "syn23036330", + "syn23035296", + "syn23036197", + "syn23036035", + "syn23035370", + "syn23036085", + "syn23035491", + "syn23036467", + "syn23035391", + "syn23036117", + "syn23035615", + "syn23036145", + "syn23035520", + "syn23035429", + "syn23036569", + "syn23036165", + "syn23035650", + "syn23035954", + "syn23035200", + "syn23035882", + "syn23036432", + "syn23035785", + "syn23035680", + "syn23036605", + "syn23036622", + "syn23036989", + "syn23036694", + "syn23036927", + "syn23036890", + "syn23035104", + "syn23036860", + "syn23037011", + "syn23036664", + "syn23035148" + ], + "synapseid_2": [ + "syn23037191", + "syn23037251", + "syn23037289", + "syn23037339", + "syn23037405", + "syn23037455", + "syn23037521", + "syn23037583", + "syn23037634", + "syn23037688", + "syn23037755", + "syn23037801", + "syn23037871", + "syn23037922", + "syn23037975", + "syn23038036", + "syn23038092", + "syn23038149", + "syn23038203", + "syn23038268", + "syn23038325", + "syn23038365", + "syn23038415", + "syn23038465", + "syn23035815", + "syn23036264", + "syn23035848", + "syn23036448", + "syn23036505", + "syn23036356", + "syn23036292", + "syn23036065", + "syn23036524", + "syn23036220", + "syn23036552", + "syn23035563", + "syn23035315", + "syn23035179", + "syn23035222", + "syn23035594", + "syn23035345", + "syn23035751", + "syn23036390", + "syn23035460", + "syn23035250", + "syn23035998", + "syn23035915", + "syn23035698", + "syn23036960", + "syn23036764", + "syn23036835", + "syn23037035", + "syn23036796", + "syn23036642", + "syn23037066", + "syn23036733", + "syn23037109", + "syn23035135", + "syn23037142" + ] +} diff --git a/jobs/BGI_Paired_Fastq/options.json b/jobs/BGI_Paired_Fastq/options.json new file mode 100644 index 0000000..38b3965 --- /dev/null +++ b/jobs/BGI_Paired_Fastq/options.json @@ -0,0 +1,17 @@ +{ + "zone": "us-east-1a", + "cluster_name": "rna-seq-reprocessing-scicomp-toil-cluster-v001", + "tmpdir": "/var/lib/toil", + "run_name": "bgi", + "log_level": "DEBUG", + "retry_count": "3", + "target_time": "1", + "max_nodes": "25", + "default_disk": "450G", + "node_types": "m5.4xlarge", + "node_storage": "500", + "preemptable_compensation": "0.5", + "rescue_frequency": "9000", + "cwl": "fastq_paired.cwl" +} +