From b10786e6df150ceca36be3dd28bbe727a8b8a9b0 Mon Sep 17 00:00:00 2001
From: bwmac <bwm03570@gmail.com>
Date: Wed, 8 May 2024 09:53:09 -0600
Subject: [PATCH] updates full test

---
 conf/test_full.config   |  3 +--
 testdata/input_full.csv | 35 ++++++++++++++++++++---------------
 2 files changed, 21 insertions(+), 17 deletions(-)

diff --git a/conf/test_full.config b/conf/test_full.config
index a98f35f..7982575 100644
--- a/conf/test_full.config
+++ b/conf/test_full.config
@@ -16,6 +16,5 @@ params {
 
     // Input data for full size test
     input = "${projectDir}/testdata/input_full.csv"
-    required_tests = "LibTiffInfoTest,BioFormatsInfoTest,OmeXmlSchemaTest"
-    skipped_tests = "FileExtensionTest,Md5ChecksumTest"
+    required_tests = "LibTiffInfoTest,BioFormatsInfoTest,OmeXmlSchemaTest,JsonLoadTest,JsonLdLoadTest,PairedFastqParityTest,TiffDateTimeTest,TiffTag306DateTimeTest"
 }
diff --git a/testdata/input_full.csv b/testdata/input_full.csv
index b987cc5..971e2aa 100644
--- a/testdata/input_full.csv
+++ b/testdata/input_full.csv
@@ -1,15 +1,20 @@
-url,file_type,md5_checksum
-syn://syn58937898,TXT,1d6155b60405bab055527913efd734a7
-syn://syn59069842,TXT,not_the_right_md5
-syn://syn59095050,TIFF,c7b08f6decb5e7572efbe6074926a843
-syn://syn59094930,TIFF,d817d0c76ce47b4ddc75368cfc7996ff
-syn://syn59094943,TIFF,28a9ee7d0e994d494068ce8d6cda0268
-syn://syn59094934,OME-TIFF,64bbfe1d1c9c171cad17b11e666b31b4
-syn://syn59094932,OME-TIFF,a2550a887091d51351d547c8beae8f0c
-syn://syn59094945,HDF5,93d78663da24b6a708f6c81207e4410a
-syn://syn59094941,TSV,2ff237d635d9eb35e09aacda22f0417f
-syn://syn59095211,CSV,72c61a50b286ff6fd3d038211426b910
-syn://syn59095268,JSON,9e7f473ccbc055ef7ac800ce861a88af
-syn://syn59094940,JSON-LD,56bb5f34da6d6df2ade3ac37e25586b7
-syn://syn59094935,BAM,14758f1afd44c09b7992073ccf00b43d
-syn://syn59094937,FASTQ,14758f1afd44c09b7992073ccf00b43d
+url,file_type,md5_checksum,test
+syn://syn58937898,TXT,1d6155b60405bab055527913efd734a7,good_txt
+syn://syn59069842,TXT,not_the_right_md5,bad_md5_extension_txt
+syn://syn59095050,TIFF,c7b08f6decb5e7572efbe6074926a843,good_tiff
+syn://syn59094930,TIFF,d817d0c76ce47b4ddc75368cfc7996ff,bad_date_tag_tiff
+syn://syn59094943,TIFF,28a9ee7d0e994d494068ce8d6cda0268,bad_date_time_tiff
+syn://syn58937898,TIFF,1d6155b60405bab055527913efd734a7,not_a_tiff
+syn://syn59094934,OME-TIFF,64bbfe1d1c9c171cad17b11e666b31b4,good_ome_tiff
+syn://syn59094932,OME-TIFF,a2550a887091d51351d547c8beae8f0c,bad_xml_ome_tiff
+syn://syn58937898,OME-TIFF,1d6155b60405bab055527913efd734a7,not_an_ome_tiff
+syn://syn59094945,HDF5,93d78663da24b6a708f6c81207e4410a,good_hd5
+syn://syn59094941,TSV,2ff237d635d9eb35e09aacda22f0417f,good_tsv
+syn://syn59095211,CSV,72c61a50b286ff6fd3d038211426b910,good_csv
+syn://syn59095268,JSON,9e7f473ccbc055ef7ac800ce861a88af,good_json
+syn://syn58937898,JSON,1d6155b60405bab055527913efd734a7,not_a_json
+syn://syn59094940,JSON-LD,56bb5f34da6d6df2ade3ac37e25586b7,good_json_ld
+syn://syn58937898,JSON-LD,1d6155b60405bab055527913efd734a7,not_a_json_ld
+syn://syn59094935,BAM,14758f1afd44c09b7992073ccf00b43d,good_bam
+syn://syn59094937,FASTQ,14758f1afd44c09b7992073ccf00b43d,good_fastq
+syn://syn58937898,FASTQ,1d6155b60405bab055527913efd734a7,not_a_fastq