From 596aef9a8a1ec3bf98449df1f5079ce88198c7cc Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Wed, 10 Jul 2024 17:59:28 +0000 Subject: [PATCH] Deployed 6252f20 with MkDocs version: 1.6.0 --- .nojekyll | 0 404.html | 2062 + CNAME | 1 + assets/_mkdocstrings.css | 119 + assets/favicon.png | Bin 0 -> 3863 bytes assets/images/favicon.png | Bin 0 -> 1870 bytes assets/javascripts/bundle.fe8b6f2b.min.js | 29 + assets/javascripts/bundle.fe8b6f2b.min.js.map | 7 + assets/javascripts/lunr/min/lunr.ar.min.js | 1 + assets/javascripts/lunr/min/lunr.da.min.js | 18 + assets/javascripts/lunr/min/lunr.de.min.js | 18 + assets/javascripts/lunr/min/lunr.du.min.js | 18 + assets/javascripts/lunr/min/lunr.el.min.js | 1 + assets/javascripts/lunr/min/lunr.es.min.js | 18 + assets/javascripts/lunr/min/lunr.fi.min.js | 18 + assets/javascripts/lunr/min/lunr.fr.min.js | 18 + assets/javascripts/lunr/min/lunr.he.min.js | 1 + assets/javascripts/lunr/min/lunr.hi.min.js | 1 + assets/javascripts/lunr/min/lunr.hu.min.js | 18 + assets/javascripts/lunr/min/lunr.hy.min.js | 1 + assets/javascripts/lunr/min/lunr.it.min.js | 18 + assets/javascripts/lunr/min/lunr.ja.min.js | 1 + assets/javascripts/lunr/min/lunr.jp.min.js | 1 + assets/javascripts/lunr/min/lunr.kn.min.js | 1 + assets/javascripts/lunr/min/lunr.ko.min.js | 1 + assets/javascripts/lunr/min/lunr.multi.min.js | 1 + assets/javascripts/lunr/min/lunr.nl.min.js | 18 + assets/javascripts/lunr/min/lunr.no.min.js | 18 + assets/javascripts/lunr/min/lunr.pt.min.js | 18 + assets/javascripts/lunr/min/lunr.ro.min.js | 18 + assets/javascripts/lunr/min/lunr.ru.min.js | 18 + assets/javascripts/lunr/min/lunr.sa.min.js | 1 + .../lunr/min/lunr.stemmer.support.min.js | 1 + assets/javascripts/lunr/min/lunr.sv.min.js | 18 + assets/javascripts/lunr/min/lunr.ta.min.js | 1 + assets/javascripts/lunr/min/lunr.te.min.js | 1 + assets/javascripts/lunr/min/lunr.th.min.js | 1 + assets/javascripts/lunr/min/lunr.tr.min.js | 18 + assets/javascripts/lunr/min/lunr.vi.min.js | 1 + assets/javascripts/lunr/min/lunr.zh.min.js | 1 + assets/javascripts/lunr/tinyseg.js | 206 + assets/javascripts/lunr/wordcut.js | 6708 ++++ .../workers/search.b8dbb3d2.min.js | 42 + .../workers/search.b8dbb3d2.min.js.map | 7 + assets/stylesheets/main.6543a935.min.css | 1 + assets/stylesheets/main.6543a935.min.css.map | 1 + assets/stylesheets/palette.06af60db.min.css | 1 + .../stylesheets/palette.06af60db.min.css.map | 1 + assets/synapse_logo.png | Bin 0 -> 28021 bytes assets/under_construction.png | Bin 0 -> 132173 bytes css/custom.css | 71 + explanations/README | 26 + explanations/access_control/index.html | 2152 ++ explanations/assets/annotation_example_1.png | Bin 0 -> 7154 bytes explanations/benchmarking/index.html | 2917 ++ .../domain_models_of_synapse/index.html | 2345 ++ explanations/home/index.html | 2148 ++ explanations/manifest_tsv/index.html | 2659 ++ .../properties_vs_annotations/index.html | 2180 ++ .../structuring_your_project/index.html | 2470 ++ guides/README | 21 + guides/accessing_the_rest_api/index.html | 2158 ++ guides/data_storage/index.html | 2893 ++ guides/home/index.html | 2152 ++ guides/validate_annotations/index.html | 2294 ++ guides/views/index.html | 2286 ++ index.html | 2258 ++ js/open_in_new_tab.js | 45 + news/index.html | 7391 ++++ objects.inv | Bin 0 -> 7969 bytes reference/README | 21 + reference/activity/index.html | 3705 ++ reference/annotations/index.html | 3971 ++ reference/cli/index.html | 2112 ++ reference/client/index.html | 30444 +++++++++++++++ reference/core/index.html | 31245 ++++++++++++++++ reference/docker_repository/index.html | 2402 ++ reference/entity/index.html | 3814 ++ reference/evaluation/index.html | 3290 ++ reference/exceptions/index.html | 3055 ++ reference/file/index.html | 2877 ++ reference/folder/index.html | 2394 ++ reference/json_schema/index.html | 7046 ++++ reference/link/index.html | 2433 ++ reference/oop/models/index.html | 26174 +++++++++++++ reference/oop/models_async/index.html | 24688 ++++++++++++ reference/permissions/index.html | 3128 ++ reference/project/index.html | 2405 ++ reference/rest_apis/index.html | 3552 ++ reference/synapse_utils/index.html | 9561 +++++ reference/table_schema/index.html | 2419 ++ reference/tables/index.html | 12530 +++++++ reference/teams/index.html | 3032 ++ reference/view_schema/index.html | 2782 ++ reference/wiki/index.html | 3229 ++ requirements.txt | 7 + scripts/downloadBenchmark.py | 196 + .../oop_poc_activity.py | 153 + .../oop_poc_file.py | 211 + .../oop_poc_folder.py | 189 + .../oop_poc_project.py | 161 + .../oop_poc_table.py | 148 + .../oop_poc_team.py | 62 + .../oop_poc_user_and_permission.py | 88 + .../synapse_project.py | 187 + scripts/print_release_issues.py | 154 + scripts/uploadBenchmark.py | 537 + scripts/uploadTestFiles.py | 298 + search/search_index.json | 1 + sitemap.xml | 3 + sitemap.xml.gz | Bin 0 -> 127 bytes termynal.css | 133 + termynal.js | 275 + tutorials/README | 31 + tutorials/authentication/index.html | 2460 ++ tutorials/command_line_client/index.html | 3960 ++ tutorials/configuration/index.html | 2309 ++ tutorials/file_versioning/index.html | 2312 ++ tutorials/home/index.html | 2316 ++ tutorials/installation/index.html | 2272 ++ tutorials/python/activity/index.html | 2130 ++ tutorials/python/annotation/index.html | 2622 ++ tutorials/python/dataset/index.html | 2088 ++ .../python/download_data_in_bulk/index.html | 2557 ++ tutorials/python/file/index.html | 2711 ++ tutorials/python/file_view/index.html | 2089 ++ tutorials/python/folder/index.html | 2523 ++ .../index.html | 2088 ++ .../python/move_files_and_folders/index.html | 2088 ++ tutorials/python/project/index.html | 2427 ++ tutorials/python/sharing_settings/index.html | 2088 ++ tutorials/python/table/index.html | 2088 ++ tutorials/python/table_crud/index.html | 2088 ++ tutorials/python/team/index.html | 2097 ++ .../tutorial_screenshots/annotation.png | Bin 0 -> 23016 bytes .../edit_provenance_button.png | Bin 0 -> 139597 bytes .../edit_provenance_screen.png | Bin 0 -> 42766 bytes .../python/tutorial_screenshots/file.png | Bin 0 -> 180810 bytes .../python/tutorial_screenshots/folder.png | Bin 0 -> 129572 bytes .../python/tutorial_scripts/annotation.py | 79 + .../tutorial_scripts/download_data_in_bulk.py | 47 + tutorials/python/tutorial_scripts/file.py | 112 + tutorials/python/tutorial_scripts/folder.py | 59 + tutorials/python/tutorial_scripts/project.py | 29 + .../tutorial_scripts/upload_data_in_bulk.py | 90 + .../python/upload_data_in_bulk/index.html | 2635 ++ tutorials/python/versions/index.html | 2089 ++ tutorials/python/wiki/index.html | 2088 ++ tutorials/python_client/index.html | 2571 ++ tutorials/reticulate/index.html | 2855 ++ tutorials/sample_files/README | 3 + .../experiment_notes/notes_2022/fileA.txt | 2 + .../experiment_notes/notes_2022/fileB.txt | 2 + .../experiment_notes/notes_2023/fileC.txt | 2 + .../experiment_notes/notes_2023/fileD.txt | 2 + .../SRR12345678_R1.fastq.gz | 3 + .../SRR12345678_R2.fastq.gz | 3 + .../SRR92345678_R1.fastq.gz | 1 + .../SRR92345678_R2.fastq.gz | 1 + .../SRR12345678_R1.fastq.gz | 2 + .../SRR12345678_R2.fastq.gz | 2 + tutorials/tables/index.html | 2624 ++ 162 files changed, 305695 insertions(+) create mode 100644 .nojekyll create mode 100644 404.html create mode 100644 CNAME create mode 100644 assets/_mkdocstrings.css create mode 100644 assets/favicon.png create mode 100644 assets/images/favicon.png create mode 100644 assets/javascripts/bundle.fe8b6f2b.min.js create mode 100644 assets/javascripts/bundle.fe8b6f2b.min.js.map create mode 100644 assets/javascripts/lunr/min/lunr.ar.min.js create mode 100644 assets/javascripts/lunr/min/lunr.da.min.js create mode 100644 assets/javascripts/lunr/min/lunr.de.min.js create mode 100644 assets/javascripts/lunr/min/lunr.du.min.js create mode 100644 assets/javascripts/lunr/min/lunr.el.min.js create mode 100644 assets/javascripts/lunr/min/lunr.es.min.js create mode 100644 assets/javascripts/lunr/min/lunr.fi.min.js create mode 100644 assets/javascripts/lunr/min/lunr.fr.min.js create mode 100644 assets/javascripts/lunr/min/lunr.he.min.js create mode 100644 assets/javascripts/lunr/min/lunr.hi.min.js create mode 100644 assets/javascripts/lunr/min/lunr.hu.min.js create mode 100644 assets/javascripts/lunr/min/lunr.hy.min.js create mode 100644 assets/javascripts/lunr/min/lunr.it.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ja.min.js create mode 100644 assets/javascripts/lunr/min/lunr.jp.min.js create mode 100644 assets/javascripts/lunr/min/lunr.kn.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ko.min.js create mode 100644 assets/javascripts/lunr/min/lunr.multi.min.js create mode 100644 assets/javascripts/lunr/min/lunr.nl.min.js create mode 100644 assets/javascripts/lunr/min/lunr.no.min.js create mode 100644 assets/javascripts/lunr/min/lunr.pt.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ro.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ru.min.js create mode 100644 assets/javascripts/lunr/min/lunr.sa.min.js create mode 100644 assets/javascripts/lunr/min/lunr.stemmer.support.min.js create mode 100644 assets/javascripts/lunr/min/lunr.sv.min.js create mode 100644 assets/javascripts/lunr/min/lunr.ta.min.js create mode 100644 assets/javascripts/lunr/min/lunr.te.min.js create mode 100644 assets/javascripts/lunr/min/lunr.th.min.js create mode 100644 assets/javascripts/lunr/min/lunr.tr.min.js create mode 100644 assets/javascripts/lunr/min/lunr.vi.min.js create mode 100644 assets/javascripts/lunr/min/lunr.zh.min.js create mode 100644 assets/javascripts/lunr/tinyseg.js create mode 100644 assets/javascripts/lunr/wordcut.js create mode 100644 assets/javascripts/workers/search.b8dbb3d2.min.js create mode 100644 assets/javascripts/workers/search.b8dbb3d2.min.js.map create mode 100644 assets/stylesheets/main.6543a935.min.css create mode 100644 assets/stylesheets/main.6543a935.min.css.map create mode 100644 assets/stylesheets/palette.06af60db.min.css create mode 100644 assets/stylesheets/palette.06af60db.min.css.map create mode 100644 assets/synapse_logo.png create mode 100644 assets/under_construction.png create mode 100644 css/custom.css create mode 100644 explanations/README create mode 100644 explanations/access_control/index.html create mode 100644 explanations/assets/annotation_example_1.png create mode 100644 explanations/benchmarking/index.html create mode 100644 explanations/domain_models_of_synapse/index.html create mode 100644 explanations/home/index.html create mode 100644 explanations/manifest_tsv/index.html create mode 100644 explanations/properties_vs_annotations/index.html create mode 100644 explanations/structuring_your_project/index.html create mode 100644 guides/README create mode 100644 guides/accessing_the_rest_api/index.html create mode 100644 guides/data_storage/index.html create mode 100644 guides/home/index.html create mode 100644 guides/validate_annotations/index.html create mode 100644 guides/views/index.html create mode 100644 index.html create mode 100644 js/open_in_new_tab.js create mode 100644 news/index.html create mode 100644 objects.inv create mode 100644 reference/README create mode 100644 reference/activity/index.html create mode 100644 reference/annotations/index.html create mode 100644 reference/cli/index.html create mode 100644 reference/client/index.html create mode 100644 reference/core/index.html create mode 100644 reference/docker_repository/index.html create mode 100644 reference/entity/index.html create mode 100644 reference/evaluation/index.html create mode 100644 reference/exceptions/index.html create mode 100644 reference/file/index.html create mode 100644 reference/folder/index.html create mode 100644 reference/json_schema/index.html create mode 100644 reference/link/index.html create mode 100644 reference/oop/models/index.html create mode 100644 reference/oop/models_async/index.html create mode 100644 reference/permissions/index.html create mode 100644 reference/project/index.html create mode 100644 reference/rest_apis/index.html create mode 100644 reference/synapse_utils/index.html create mode 100644 reference/table_schema/index.html create mode 100644 reference/tables/index.html create mode 100644 reference/teams/index.html create mode 100644 reference/view_schema/index.html create mode 100644 reference/wiki/index.html create mode 100644 requirements.txt create mode 100644 scripts/downloadBenchmark.py create mode 100644 scripts/object_orientated_programming_poc/oop_poc_activity.py create mode 100644 scripts/object_orientated_programming_poc/oop_poc_file.py create mode 100644 scripts/object_orientated_programming_poc/oop_poc_folder.py create mode 100644 scripts/object_orientated_programming_poc/oop_poc_project.py create mode 100644 scripts/object_orientated_programming_poc/oop_poc_table.py create mode 100644 scripts/object_orientated_programming_poc/oop_poc_team.py create mode 100644 scripts/object_orientated_programming_poc/oop_poc_user_and_permission.py create mode 100644 scripts/object_orientated_programming_poc/synapse_project.py create mode 100644 scripts/print_release_issues.py create mode 100644 scripts/uploadBenchmark.py create mode 100644 scripts/uploadTestFiles.py create mode 100644 search/search_index.json create mode 100644 sitemap.xml create mode 100644 sitemap.xml.gz create mode 100644 termynal.css create mode 100644 termynal.js create mode 100644 tutorials/README create mode 100644 tutorials/authentication/index.html create mode 100644 tutorials/command_line_client/index.html create mode 100644 tutorials/configuration/index.html create mode 100644 tutorials/file_versioning/index.html create mode 100644 tutorials/home/index.html create mode 100644 tutorials/installation/index.html create mode 100644 tutorials/python/activity/index.html create mode 100644 tutorials/python/annotation/index.html create mode 100644 tutorials/python/dataset/index.html create mode 100644 tutorials/python/download_data_in_bulk/index.html create mode 100644 tutorials/python/file/index.html create mode 100644 tutorials/python/file_view/index.html create mode 100644 tutorials/python/folder/index.html create mode 100644 tutorials/python/migrate_data_to_other_storage_locations/index.html create mode 100644 tutorials/python/move_files_and_folders/index.html create mode 100644 tutorials/python/project/index.html create mode 100644 tutorials/python/sharing_settings/index.html create mode 100644 tutorials/python/table/index.html create mode 100644 tutorials/python/table_crud/index.html create mode 100644 tutorials/python/team/index.html create mode 100644 tutorials/python/tutorial_screenshots/annotation.png create mode 100644 tutorials/python/tutorial_screenshots/edit_provenance_button.png create mode 100644 tutorials/python/tutorial_screenshots/edit_provenance_screen.png create mode 100644 tutorials/python/tutorial_screenshots/file.png create mode 100644 tutorials/python/tutorial_screenshots/folder.png create mode 100644 tutorials/python/tutorial_scripts/annotation.py create mode 100644 tutorials/python/tutorial_scripts/download_data_in_bulk.py create mode 100644 tutorials/python/tutorial_scripts/file.py create mode 100644 tutorials/python/tutorial_scripts/folder.py create mode 100644 tutorials/python/tutorial_scripts/project.py create mode 100644 tutorials/python/tutorial_scripts/upload_data_in_bulk.py create mode 100644 tutorials/python/upload_data_in_bulk/index.html create mode 100644 tutorials/python/versions/index.html create mode 100644 tutorials/python/wiki/index.html create mode 100644 tutorials/python_client/index.html create mode 100644 tutorials/reticulate/index.html create mode 100644 tutorials/sample_files/README create mode 100644 tutorials/sample_files/my_ad_project/experiment_notes/notes_2022/fileA.txt create mode 100644 tutorials/sample_files/my_ad_project/experiment_notes/notes_2022/fileB.txt create mode 100644 tutorials/sample_files/my_ad_project/experiment_notes/notes_2023/fileC.txt create mode 100644 tutorials/sample_files/my_ad_project/experiment_notes/notes_2023/fileD.txt create mode 100644 tutorials/sample_files/my_ad_project/single_cell_RNAseq_batch_1/SRR12345678_R1.fastq.gz create mode 100644 tutorials/sample_files/my_ad_project/single_cell_RNAseq_batch_1/SRR12345678_R2.fastq.gz create mode 100644 tutorials/sample_files/my_ad_project/single_cell_RNAseq_batch_1/SRR92345678_R1.fastq.gz create mode 100644 tutorials/sample_files/my_ad_project/single_cell_RNAseq_batch_1/SRR92345678_R2.fastq.gz create mode 100644 tutorials/sample_files/my_ad_project/single_cell_RNAseq_batch_2/SRR12345678_R1.fastq.gz create mode 100644 tutorials/sample_files/my_ad_project/single_cell_RNAseq_batch_2/SRR12345678_R2.fastq.gz create mode 100644 tutorials/tables/index.html diff --git a/.nojekyll b/.nojekyll new file mode 100644 index 000000000..e69de29bb diff --git a/404.html b/404.html new file mode 100644 index 000000000..1fb3caf90 --- /dev/null +++ b/404.html @@ -0,0 +1,2062 @@ + + + +
+ + + + + + + + + + + + + + + + + + +