- BiVeS [source] [documentation]
The BiVeS framework- BiVeS-Core [source] [documentation]
The core of BiVeS - BiVeS-WS [source] [documentation]
The BiVeS web service - BiVeS-WS-Client [source] [documentation]
JAVA client library for the BiVeS web service - BiVeS-SBML [source] [documentation]
the SBML module of BiVeS - BiVeS-CellML [source] [documentation]
the CellML module of BiVeS - BudHat [source] [documentation]
Showcase for the BiVeS framework - XMLUtils [source] [documentation]
a Java library to ease the daily work on XML documents
- BiVeS-Core [source] [documentation]
- CombineArchive [source] [documentation]
library to read/write/create/manipulate/... CombineArchives - CombineArchiveShowCase [source]
Showcase showing an fully featured CombineArchive - CombineArchiveWeb [source] [documentation] [webCat]
Web interface to create/modify/share CombineArchives - CombineExt [source] [documentation]
usefull tools, when working with COMBINE standards- CombineExt-PharmMl [source] [documentation]
Example on how to extend CombineExt with the PharmMl standard
- CombineExt-PharmMl [source] [documentation]
- COMODI [source] [web-page] [wiki]
ontology because COmputational MOdels DIffer- jCOMODI [source] [documentation]
java api for COMODI
- jCOMODI [source] [documentation]
- M2CAT [source] [documentation]
Web based tool to export reproducible research results - MaSyMoS-Core [source] [documentation]
Graph-Database for SystemsBiology models- MaSyMoS-CLI [source]
Collection of main classes to interact with MaSyMoS on the command line - MaSyMoS-Morre [source]
REST interface for MaSyMoS. Allows to search/retrieve as well as push models to the database - MaSyMoS-Morre-client [source] [documentation]
Java library to access the MaSyMoS-Morre REST api - MaSyMoS-Docker [source] [Docker Hub]
Fully featured Docker image of MaSyMoS, including Rank Aggregation and Diff/Multi-Version support
- MaSyMoS-CLI [source]
- ModelCrawler [source] [documentation]
Tool to crawl all models from BioModels Database and PMR2/CellML model repository - MOST [source] [documentation] [website]
ModelStatistics showing the evolution of biological models from BioModels Database and the CellML Model Repository
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