Suggestive Annotation

Instructions to Run:

1. Download the gland segmentation challenge dataset and extract it into folder Warwick QU Dataset (Released 2016_07_08).
2. To change all images to same dimensions run reshape.py. It generates the new images in reshaped_warwick directory. Move the images you don't want to start training with, into images_train_eval and also the corresponding annotations into segments_train_eval.
3. Now to generate the csv files, run gen_csv.py
4. Now, to run 4 sessions of training over 4 bootstrapped datasets, run train.py
5. To get the list of images to add for active learning, run eval.py. Make sure the eval_data flag in eval.py is train_eval
6. After this, to get the list of images to add to the training set (move from train_eval to train folder) run active_selection.py

Again goto step 3, till satifactory results are not obtained.