Update genomes.json #61
Workflow file for this run
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| name: Gigwa Build Staging test | |
| on: | |
| push: | |
| tags: | |
| - 'STAGING' | |
| jobs: | |
| pre-realese: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4.1.6 | |
| - name: Set up Java | |
| uses: actions/setup-java@v4.2.1 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 17 | |
| - name: Build project | |
| run: | | |
| wget https://raw.githubusercontent.com/${{ github.repository }}/staging/misc/build-staging.sh | |
| chmod +x build-staging.sh | |
| ./build-staging.sh -P staging | |
| pwd | |
| ls | |
| - name: Delete old prelease and tag | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| TAG_NAME=$(basename ${{ github.ref }}) | |
| echo "Deleting release and tag $TAG_NAME" | |
| # Get the release ID associated with the tag | |
| RELEASE_ID=$(curl -s -H "Authorization: token $GITHUB_TOKEN" \ | |
| "https://api.github.com/repos/${{ github.repository }}/releases/tags/$TAG_NAME" \ | |
| | jq -r '.id') | |
| if [ "$RELEASE_ID" != "null" ]; then | |
| echo "Deleting release with ID $RELEASE_ID" | |
| # Delete the release | |
| curl -s -X DELETE -H "Authorization: token $GITHUB_TOKEN" \ | |
| "https://api.github.com/repos/${{ github.repository }}/releases/$RELEASE_ID" | |
| else | |
| echo "No release found for tag $TAG_NAME" | |
| fi | |
| # Delete the tag locally | |
| git tag -d $TAG_NAME | |
| # Delete the tag from the remote repository | |
| git push origin :refs/tags/$TAG_NAME | |
| - name: Set up variables | |
| id: vars | |
| run: | | |
| echo "DATE=$(date +'%d/%m/%y')" >> $GITHUB_ENV | |
| echo "SHORT_SHA=$(git rev-parse --short HEAD)" >> $GITHUB_ENV | |
| echo "NEW_NAME=Gigwa2_STAGING" >> $GITHUB_ENV | |
| - name: Create prerelease | |
| id: create_release | |
| uses: actions/create-release@v1.1.4 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| tag_name: "STAGING" | |
| release_name: "STAGING" | |
| draft: false | |
| prerelease: true | |
| body: "This is a staging prerelease ${{ env.DATE }} ${{ env.SHORT_SHA }}" | |
| - name: Grep release version | |
| id: grep_release_version | |
| run: | | |
| # RESULT=$(grep -m 1 project\\\.version ${{ github.event.repository.name }}/pom.xml | sed -n 's/.*<project\.version>\(.*\)<\/project\.version>.*/\1/p') | |
| echo "release_version=$(grep -m 1 project\\\.version ${{ github.event.repository.name }}/pom.xml | sed -n 's/.*<project\.version>\(.*\)<\/project\.version>.*/\1/p')" >>$GITHUB_OUTPUT | |
| shell: bash | |
| - name: Upload main prerelease asset (webapp zip) | |
| id: upload-release-asset | |
| uses: actions/upload-release-asset@v1.0.2 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ steps.create_release.outputs.upload_url }} | |
| asset_path: ${{ github.event.repository.name }}/target/Gigwa_V${{ steps.grep_release_version.outputs.release_version }}_Webapp.zip | |
| asset_name: ${{ env.NEW_NAME }}.zip | |
| asset_content_type: application/zip | |
| # ssh: | |
| # runs-on: ubuntu-latest | |
| # needs: build | |
| # steps: | |
| # - name: Checkout | |
| # uses: actions/checkout@v3 | |
| # - name: Install OpenVPN | |
| # run: | | |
| # sudo apt update | |
| # sudo apt install -y openvpn openvpn-systemd-resolved | |
| # - name: Connect to VPN | |
| # uses: "kota65535/github-openvpn-connect-action@v2" | |
| # with: | |
| # config_file: .github/workflows/client.ovpn | |
| # username: ${{ secrets.OVPN_USERNAME }} | |
| # password: ${{ secrets.OVPN_PASSWORD }} | |
| # client_key: ${{ secrets.USER_KEY }} | |
| # - name: Use SSH | |
| # uses: appleboy/ssh-action@master | |
| # with: | |
| # host: ${{ secrets.SERVER_HOST }} | |
| # username: ${{ secrets.SERVER_USERNAME }} | |
| # key: ${{ secrets.SSH_PRIVATE_KEY }} | |
| # script: | | |
| # ls |