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Added missing file (possibly forgot to commmit/push it)
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@GuilhemSempere
GuilhemSempere committed Jul 2, 2024
1 parent a488316 commit 03759c7
Showing 1 changed file with 284 additions and 0 deletions.
284 changes: 284 additions & 0 deletions src/main/webapp/js/common.js
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/*******************************************************************************
* GIGWA - Genotype Investigator for Genome Wide Analyses
* Copyright (C) 2016 - 2019, <CIRAD> <IRD>
*
* This program is free software: you can redistribute it and/or modify it under
* the terms of the GNU Affero General Public License, version 3 as published by
* the Free Software Foundation.
*
* This program is distributed in the hope that it will be useful, but WITHOUT
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
* FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more
* details.
*
* See <http://www.gnu.org/licenses/agpl.html> for details about GNU General
* Public License V3.
*******************************************************************************/

/**
*
* This file stores common js methods
*/

var minimumProcessQueryIntervalUnit = 100;
var emptyResponseCountsByProcess = [];
var StringBuffer = function() {
this.buffer = new Array();
};
StringBuffer.prototype.append = function(str) {
this.buffer[this.buffer.length] = str;
};
StringBuffer.prototype.toString = function() {
return this.buffer.join("");
};
if (!String.prototype.endsWith) {
String.prototype.endsWith = function(suffix) {
return this.indexOf(suffix, this.length - suffix.length) !== -1;
};
}


function isHex(h) {
var a = parseInt(h, 16);
return (a.toString(16) === h.toLowerCase())
}

function arrayContains(array, element)
{
for (var i = 0; i < array.length; i++)
if (array[i] == element)
return true;
return false;
}

function arrayContainsIgnoreCase(array, element)
{
for (var i = 0; i < array.length; i++)
if ((array[i] == null && element == null) || (array[i] != null && element != null && array[i].toLowerCase() == element.toLowerCase()))
return true;
return false;
}

function hashCode(s)
{
return s.toString().split("").reduce(function(a,b){a=((a<<5)-a)+b.charCodeAt(0);return Math.abs(a&a)},0);
}

function idLooksGenerated(id)
{
var regex = RegExp("^[0-9a-f]+$");
return id.length == 20 && regex.exec(id) != null;
}

function getProjectId(){
return $('#project :selected').data("id");
}

function getModuleName(){
return $('#module').val();
}

// function to get url param
function $_GET(param) {
var vars = {};
window.location.href.replace(location.hash, '').replace(
/[?&]+([^=&]+)=?([^&]*)?/gi, // regexp
function (m, key, value) { // callback
vars[key] = value !== undefined ? value : '';
}
);
if (param) {
return vars[param] ? vars[param] : null;
}
return vars;
}

function displayProcessProgress(nbMin, token, processId, onSuccessMethod) {
var functionToCall = function(onSuccessMethod) {
$.ajax({
url: progressUrl + (processId != null ? "?progressToken=" + processId : ""), // if no processId provided, server code will use auth token instead
type: "GET",
headers: {
"Authorization": "Bearer " + token
},
success: function (jsonResult, textStatus, jqXHR) {
if (jsonResult == null && (typeof processAborted == "undefined" || !processAborted)) {
var processKey = processId != null ? processId : token;
if (emptyResponseCountsByProcess[processKey] == null)
emptyResponseCountsByProcess[processKey] = 1;
else
emptyResponseCountsByProcess[processKey]++;
if (emptyResponseCountsByProcess[processKey] > 10) {
console.log("Giving up requesting progress for process " + processKey);
emptyResponseCountsByProcess[processKey] = null;
}
else
displayProcessProgress(nbMin, token, processId, onSuccessMethod);
}
else if (jsonResult != null && jsonResult['complete'] == true) {
if (onSuccessMethod != null)
onSuccessMethod(jsonResult['finalMessage']);
emptyResponseCountsByProcess[processKey] = null;
$('#progress').modal('hide');
}
else if (jsonResult != null && jsonResult['aborted'] == true) {
if (typeof markCurrentProcessAsAborted != "undefined")
markCurrentProcessAsAborted();
else
processAborted = true;
emptyResponseCountsByProcess[processKey] = null;
$('#progress').modal('hide');
}
else {
if (jsonResult != null && jsonResult['error'] != null) {
alert("Error occurred:\n\n" + jsonResult['error']);
$('#progress').data('error', true);
$('#progress').modal('hide');
emptyResponseCountsByProcess[processKey] = null;
} else {
if (jsonResult != null)
$('#progressText').html(jsonResult.progressDescription);
displayProcessProgress(nbMin, token, processId, onSuccessMethod);
}
}
},
error: function (xhr, ajaxOptions, thrownError) {
handleError(xhr, thrownError);
}
});
}
setTimeout(function() { functionToCall(onSuccessMethod); }, (minimumProcessQueryIntervalUnit * nbMin));
}

function abort(token) {
$('#progressText').html("Aborting...").fadeIn();
$('#exportPanel').hide();
$('#progress').data('error', true);
$.ajax({
url: abortUrl,
type: "DELETE",
headers: {
"Authorization": "Bearer " + token
},
success: function (jsonResult) {
if (jsonResult.processAborted === true) {
processAborted = true;
$('#progress').modal('hide');
} else {
handleError(null, "unable to abort");
//$('#progress').modal('hide');
}
},
error: function (xhr, ajaxOptions, thrownError) {
handleError(xhr, thrownError);
}
});
}

function displayMessage(message, duration) {
duration = duration === undefined ? 5000 : duration;
$(document.body).append('<div class="alert alert-info alert-dismissable fade in" style="z-index:2000; position:absolute; top:100px; left:' + (15 + $("div#searchPanel").width() / 4) + 'px; min-width:450px;"><a href="#" class="close" data-dismiss="alert" aria-label="close">&times;</a><div id="msg">' + message + '</div></div>');
if (duration !== null){
window.setTimeout(function() {
$(".alert").fadeTo(500, 0, function(){
$(this).remove();
});
}, duration);
}
}

function handleError(xhr, thrownError) {
if (xhr != null && xhr.status == 401) {
location.href = 'login.do';
return;
}

var mainMsg = null, errorMsg = null;
if (xhr != null && xhr.status /*DropZone returns 0 for client side errors*/> 0 && xhr.status < 500)
mainMsg = (xhr.statusText == "" ? "Error " + xhr.status : xhr.statusText) + ": " + (xhr.responseText == "" ? thrownError : xhr.responseText);
else {
mainMsg = xhr != null ? 'Request Status: ' + xhr.status : (thrownError != null ? thrownError : '');
if (xhr != null && xhr.responseText != null) {
try {
errorMsg = (xhr.statusText == "" ? "Error " + xhr.status : xhr.statusText) + ": " + $.parseJSON(xhr.responseText)['errorMsg'];
}
catch (err) {
errorMsg = (xhr.statusText == "" ? "Error " + xhr.status : xhr.statusText) + ": " + xhr.responseText;
}
}
}

$(document.body).append('<div class="alert alert-warning alert-dismissable fade in" style="z-index:2000; position:absolute; top:53px; left:10%; min-width:400px;"><a href="#" class="close" data-dismiss="alert" aria-label="close">&times;</a><strong>An error occured!</strong><div id="msg">' + mainMsg + " " + (errorMsg != null ? "<button style='float:right; margin-top:-20px;' onclick='$(this).next().show(200); $(this).remove();'>Click for technical details</button><pre style='display:none; font-size:10px;'>" + errorMsg + "</pre>" : "") + '</div></div>');
window.setTimeout(function() {
$(".alert").fadeTo(500, 0, function(){
$(this).remove();
});
}, 5000);
$('div.modal').modal('hide');
}

var arrayIntersection = function(){
return Array.from(arguments).reduce(function(previous, current){
return previous.filter(function(element){
return current.indexOf(element) > -1;
});
});
};

function isNumberKey(evt) {
var charCode = (evt.which) ? evt.which : evt.keyCode;
if (charCode > 31 && (charCode < 48 || charCode > 57) && charCode !== 39 && charCode !== 37) {
return false;
}
return true;
}

function getToken() {
$.ajax({
url: tokenURL,
async: false,
type: "POST",
dataType: "json",
contentType: "application/json;charset=utf-8",
success: function (jsonResult) {
token = jsonResult.token;
if (document.referrer.endsWith("/login.do") && jsonResult.msg != null)
alert(jsonResult.msg);
},
error: function (xhr, thrownError) {
handleError(xhr, thrownError);
}
});
}

// clear user token
function clearToken() {
$.ajax({
url: clearTokenURL,
type: "DELETE",
async: navigator.userAgent.indexOf("Firefox") == -1, // for some reason it has to be synchronous for it to work with Firefox when triggered from a beforeunload event
dataType: "json",
contentType: "application/json;charset=utf-8",
headers: {
"Authorization": "Bearer " + token
},
error: function(xhr, thrownError) {
if (xhr.status != 0) // Firefox gets this instead of 401 (!)
handleError(xhr, thrownError);
}
});
}

function containsHtmlTags(xStr)
{
return xStr != xStr.replace(/<\/?[^>]+>/gi,"");
}

function buildHeader(token, assemblyId, individuals) {
var headers = { "Authorization": "Bearer " + token };
if (assemblyId != null)
headers["assembly"] = assemblyId;
if (individuals != null)
headers["ind"] = individuals;
return headers;
}

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