From 5893c54981b4379f9769b66d5bf8f637b07896e9 Mon Sep 17 00:00:00 2001
From: Sagar <sriramkanakam87@gmail.com>
Date: Tue, 19 Nov 2024 14:57:38 +0100
Subject: [PATCH] fix: fixed the file name issue

---
 app/Console/Commands/Import3DSDFs.php | 24 +++++++++++-------------
 1 file changed, 11 insertions(+), 13 deletions(-)

diff --git a/app/Console/Commands/Import3DSDFs.php b/app/Console/Commands/Import3DSDFs.php
index 1f07a557..6dc5c2ab 100644
--- a/app/Console/Commands/Import3DSDFs.php
+++ b/app/Console/Commands/Import3DSDFs.php
@@ -20,19 +20,25 @@ class Import3DSDFs extends Command
      *
      * @var string
      */
-    protected $description = 'Imports 3D SDFs from a JSON file into Structures table';
+    protected $description = 'Imports 3D SDFs from multiple JSON file into Structures table';
 
     /**
      * Execute the console command.
      */
     public function handle()
     {
+        $batchSize = 10000; // Number of molecules to process in each batch
+
         $file = storage_path($this->argument('file'));
         $file_suffix = (int) $file[strpos($file, '.json') - 1];
         $file_name_without_id = substr($file, 0, strpos($file, '.json') - 1);
 
         // loop runs though all the files
         for (; $file_suffix <= 18; $file_suffix++) {
+
+            $json = null;
+            $json_data = [];
+
             $file_name = $file_name_without_id.$file_suffix.'.json';
             $this->info('Starting loop for file '.$file_name);
             if (! file_exists($file_name) || ! is_readable($file_name)) {
@@ -41,33 +47,25 @@ public function handle()
                 return 1;
             }
 
-            $batchSize = 1000;
-            $header = null;
-            $data = [];
-            $rowCount = 0;
-
-            $json = file_get_contents($file);
+            $json = file_get_contents($file_name);
             if ($json === false) {
                 exit('Error reading the JSON file');
             }
             $this->info('File read');
 
             $json_data = json_decode($json, true);
-            $this->info('Total elements successfully read: '.count($json_data));
-
-            $batchSize = 10000; // Number of molecules to process in each batch
-            $data = []; // Array to store data for batch updating
+            $keys = array_keys($json_data);
+            $this->info(end($keys));
 
             $totalElements = count($json_data);
             $this->info('Total elements: '.$totalElements);
+
             for ($i = 0; $i < $totalElements; $i += $batchSize) {
                 $this->info('Processing batch '.($i / $batchSize + 1).' of '.ceil($totalElements / $batchSize));
                 $batch = array_slice($json_data, $i, $totalElements - $i < $batchSize ? $totalElements - $i : $batchSize);
                 $this->insertBatch($batch);
             }
-
         }
-
         $this->info('Annotation scores generated successfully.');
     }